GP9 (glycoprotein IX platelet) - Rat Genome Database

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Pathways
Gene: GP9 (glycoprotein IX platelet) Sus scrofa
Analyze
Symbol: GP9
Name: glycoprotein IX platelet
RGD ID: 13921207
Description: INVOLVED IN megakaryocyte development (ortholog); PARTICIPATES IN platelet aggregation pathway; ASSOCIATED WITH Bernard-Soulier syndrome (ortholog); Bernard-Soulier Syndrome, Type C (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GPIX; platelet glycoprotein IX
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,560,012 - 71,562,774 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,213,436 - 79,213,825 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
GP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,560,012 - 71,562,774 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,213,436 - 79,213,825 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,054,845 - 129,062,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,060,779 - 129,062,435 (+)Ensemblhg38GRCh38
GRCh373128,779,622 - 128,781,249 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,262,335 - 130,263,939 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343130,262,342 - 130,263,945NCBI
Celera3127,211,950 - 127,213,558 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3126,166,125 - 126,167,732 (+)NCBIHuRef
CHM1_13128,743,075 - 128,744,683 (+)NCBICHM1_1
T2T-CHM13v2.03131,799,713 - 131,807,274 (+)NCBIT2T-CHM13v2.0
Gp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,753,115 - 87,756,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,755,054 - 87,756,750 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38687,776,131 - 87,779,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,778,072 - 87,779,768 (+)Ensemblmm10GRCm38
MGSCv37687,728,130 - 87,729,756 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36687,743,777 - 87,745,403 (+)NCBIMGSCv36mm8
Celera689,715,360 - 89,716,986 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
Gp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,792,842 - 121,794,452 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4121,792,653 - 121,794,475 (+)EnsemblGRCr8
mRatBN7.24120,235,500 - 120,237,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,235,421 - 120,237,110 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4125,714,540 - 125,715,875 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,489,331 - 121,490,666 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,113,566 - 120,114,901 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd4123,317,191 - 123,318,801 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive4120,963,374 - 120,964,984 (+)NCBILyon_Normotensive
Lyon_Hypertensive4121,481,207 - 121,482,817 (+)NCBILyon_Hypertensive
F344_StmMcwi4121,324,438 - 121,326,048 (+)NCBIF344_StmMcwi
Rnor_6.04119,680,671 - 119,682,006 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)Ensemblrn6Rnor6.0
Rnor_5.04184,931,999 - 184,933,334 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44121,965,797 - 121,967,132 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4109,196,129 - 109,197,464 (+)NCBICelera
Cytogenetic Map4q34NCBI
Gp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,478,165 - 10,479,425 (-)Ensembl
ChiLan1.0NW_00495545010,478,165 - 10,479,425 (-)NCBIChiLan1.0ChiLan1.0
GP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22126,993,599 - 126,997,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13126,998,316 - 127,002,292 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,118,762 - 126,122,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,479,202 - 133,480,843 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,480,173 - 133,480,706 (+)EnsemblpanPan2panpan1.1
GP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,027,790 - 3,029,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,064,497 - 3,066,213 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0203,048,622 - 3,050,338 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl203,048,699 - 3,049,232 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,768,165 - 2,769,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,090,922 - 3,092,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,055,430 - 3,057,146 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,128,784 - 20,129,755 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936798170,654 - 171,625 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,000,620 - 52,013,570 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,000,758 - 52,001,291 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041114,366,247 - 114,367,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247817,579,824 - 7,581,516 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gp9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1658,539,507 - 58,540,850 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in GP9
167 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000037037   ⟹   ENSSSCP00000039463
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1371,560,012 - 71,562,774 (+)Ensembl
RefSeq Acc Id: NM_001141989   ⟹   NP_001135461
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11371,561,108 - 71,561,629 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068317   ⟹   XP_020923976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068318   ⟹   XP_020923977
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11371,560,535 - 71,565,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068319   ⟹   XP_020923978
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068320   ⟹   XP_020923979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020923978   ⟸   XM_021068319
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U3F9 (UniProtKB/TrEMBL),   B7TY22 (UniProtKB/TrEMBL),   A0A8D1UZV8 (UniProtKB/TrEMBL),   A0A8D2C433 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923976   ⟸   XM_021068317
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U3F9 (UniProtKB/TrEMBL),   B7TY22 (UniProtKB/TrEMBL),   A0A8D1UZV8 (UniProtKB/TrEMBL),   A0A8D2C433 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923979   ⟸   XM_021068320
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U3F9 (UniProtKB/TrEMBL),   B7TY22 (UniProtKB/TrEMBL),   A0A8D1UZV8 (UniProtKB/TrEMBL),   A0A8D2C433 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923977   ⟸   XM_021068318
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U3F9 (UniProtKB/TrEMBL),   B7TY22 (UniProtKB/TrEMBL),   A0A8D1UZV8 (UniProtKB/TrEMBL),   A0A8D2C433 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001135461   ⟸   NM_001141989
- Peptide Label: precursor
- UniProtKB: B7TY22 (UniProtKB/TrEMBL),   A0A4X1U3F9 (UniProtKB/TrEMBL),   A0A8D1UZV8 (UniProtKB/TrEMBL),   A0A8D2C433 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000039463   ⟸   ENSSSCT00000037037
Protein Domains
LRRCT   LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015069999 UniProtKB/TrEMBL
  ENSSSCG00025034169 UniProtKB/TrEMBL
  ENSSSCG00035081181 UniProtKB/TrEMBL
  ENSSSCG00040030429 UniProtKB/TrEMBL
  ENSSSCG00045008990 UniProtKB/TrEMBL
  ENSSSCG00060029306 UniProtKB/TrEMBL
  ENSSSCG00065028154 UniProtKB/TrEMBL
  ENSSSCG00070013771 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037037 ENTREZGENE
  ENSSSCT00000037037.3 UniProtKB/TrEMBL
  ENSSSCT00015093757.1 UniProtKB/TrEMBL
  ENSSSCT00025046569.1 UniProtKB/TrEMBL
  ENSSSCT00035111618.1 UniProtKB/TrEMBL
  ENSSSCT00040040882.1 UniProtKB/TrEMBL
  ENSSSCT00045015221.1 UniProtKB/TrEMBL
  ENSSSCT00060039589.1 UniProtKB/TrEMBL
  ENSSSCT00065037962.1 UniProtKB/TrEMBL
  ENSSSCT00070026877.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  GPIb-IX-V_Complex UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
KEGG Report ssc:100216312 UniProtKB/TrEMBL
NCBI Gene GP9 ENTREZGENE
PANTHER GLYCOPROTEIN IB BETA UniProtKB/TrEMBL
  PLATELET GLYCOPROTEIN IX UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
SMART LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A4X1U3F9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UZV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2C433 ENTREZGENE, UniProtKB/TrEMBL
  B7TY22 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88567 ENTREZGENE