GP9 (glycoprotein IX platelet) - Rat Genome Database

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Gene: GP9 (glycoprotein IX platelet) Canis lupus familiaris
Analyze
Symbol: GP9
Name: glycoprotein IX platelet
RGD ID: 12128201
Description: INVOLVED IN blood coagulation (inferred); blood coagulation, intrinsic pathway (inferred); megakaryocyte development (inferred); PARTICIPATES IN platelet aggregation pathway; ASSOCIATED WITH alkaptonuria (ortholog); Bernard-Soulier syndrome (ortholog); Bernard-Soulier Syndrome, Type C (ortholog); FOUND IN glycoprotein Ib-IX-V complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: platelet glycoprotein IX
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,027,790 - 3,029,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,064,497 - 3,066,213 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0203,048,622 - 3,050,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl203,048,699 - 3,049,232 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,768,165 - 2,769,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,090,922 - 3,092,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,055,430 - 3,057,146 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
GP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,027,790 - 3,029,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,064,497 - 3,066,213 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0203,048,622 - 3,050,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl203,048,699 - 3,049,232 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,768,165 - 2,769,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,090,922 - 3,092,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,055,430 - 3,057,146 (-)NCBIUU_Cfam_GSD_1.0
GP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,054,845 - 129,062,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,060,779 - 129,062,406 (+)EnsemblGRCh38hg38GRCh38
GRCh373128,779,622 - 128,781,249 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,262,335 - 130,263,939 (+)NCBINCBI36Build 36hg18NCBI36
Build 343130,262,342 - 130,263,945NCBI
Celera3127,211,950 - 127,213,558 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3126,166,125 - 126,167,732 (+)NCBIHuRef
CHM1_13128,743,075 - 128,744,683 (+)NCBICHM1_1
T2T-CHM13v2.03131,799,713 - 131,807,274 (+)NCBIT2T-CHM13v2.0
Gp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,753,115 - 87,756,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,755,054 - 87,756,750 (+)EnsemblGRCm39 Ensembl
GRCm38687,776,131 - 87,779,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,778,072 - 87,779,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,728,130 - 87,729,756 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,743,777 - 87,745,403 (+)NCBIMGSCv36mm8
Celera689,715,360 - 89,716,986 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
Gp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,792,842 - 121,794,452 (+)NCBIGRCr8
mRatBN7.24120,235,500 - 120,237,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,235,421 - 120,237,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,714,540 - 125,715,875 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,489,331 - 121,490,666 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,113,566 - 120,114,901 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,680,671 - 119,682,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04184,931,999 - 184,933,334 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,965,797 - 121,967,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4109,196,129 - 109,197,464 (+)NCBICelera
Cytogenetic Map4q34NCBI
Gp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,478,165 - 10,479,425 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,478,165 - 10,479,425 (-)NCBIChiLan1.0ChiLan1.0
GP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22126,993,599 - 126,997,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13126,998,316 - 127,002,292 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,118,762 - 126,122,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,479,202 - 133,480,843 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,480,173 - 133,480,706 (+)Ensemblpanpan1.1panPan2
Gp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,128,784 - 20,129,755 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936798170,654 - 171,625 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,560,012 - 71,562,774 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,213,436 - 79,213,825 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,000,620 - 52,013,570 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,000,758 - 52,001,291 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,366,247 - 114,367,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247817,579,824 - 7,581,516 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GP9
15 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845036520   ⟹   ENSCAFP00845028579
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl203,048,699 - 3,049,232 (-)Ensembl
RefSeq Acc Id: XM_038426776   ⟹   XP_038282704
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0203,048,622 - 3,050,338 (-)NCBI
RefSeq Acc Id: XM_038502585   ⟹   XP_038358513
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1202,768,165 - 2,769,881 (-)NCBI
RefSeq Acc Id: XM_038565495   ⟹   XP_038421423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0203,055,430 - 3,057,146 (-)NCBI
RefSeq Acc Id: XM_038629616   ⟹   XP_038485544
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0203,090,922 - 3,092,638 (-)NCBI
RefSeq Acc Id: XM_846924   ⟹   XP_852017
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1203,027,790 - 3,029,496 (-)NCBI
Dog10K_Boxer_Tasha203,064,497 - 3,066,213 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_852017   ⟸   XM_846924
- UniProtKB: A0A8C0QVJ9 (UniProtKB/TrEMBL),   A0A8C0TU65 (UniProtKB/TrEMBL),   A0A8I3PD95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038358513   ⟸   XM_038502585
RefSeq Acc Id: XP_038485544   ⟸   XM_038629616
RefSeq Acc Id: XP_038282704   ⟸   XM_038426776
- UniProtKB: A0A8C0QVJ9 (UniProtKB/TrEMBL),   A0A8C0TU65 (UniProtKB/TrEMBL),   A0A8I3PD95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421423   ⟸   XM_038565495
- UniProtKB: A0A8C0QVJ9 (UniProtKB/TrEMBL),   A0A8C0TU65 (UniProtKB/TrEMBL),   A0A8I3PD95 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845028579   ⟸   ENSCAFT00845036520
Protein Domains
LRRCT   LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00040025972 UniProtKB/TrEMBL
  ENSCAFG00845020723 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00040048598.1 UniProtKB/TrEMBL
  ENSCAFT00845036520 ENTREZGENE
  ENSCAFT00845036520.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
KEGG Report cfa:609630 UniProtKB/TrEMBL
NCBI Gene GP9 ENTREZGENE
PANTHER GLYCOPROTEIN IB BETA UniProtKB/TrEMBL
  PLATELET GLYCOPROTEIN IX UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
SMART LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C0QVJ9 ENTREZGENE
  A0A8C0TU65 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PD95 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41357 ENTREZGENE