Gp9 (glycoprotein 9 (platelet)) - Rat Genome Database
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Gene: Gp9 (glycoprotein 9 (platelet)) Mus musculus
Analyze
Symbol: Gp9
Name: glycoprotein 9 (platelet)
RGD ID: 1615922
MGI Page MGI
Description: Predicted to be involved in blood coagulation and cell adhesion. Predicted to localize to integral component of membrane. Is expressed in several structures, including brain; foregut; hemolymphoid system; liver; and male reproductive gland or organ. Human ortholog(s) of this gene implicated in Bernard-Soulier syndrome. Orthologous to human GP9 (glycoprotein IX platelet); PARTICIPATES IN platelet aggregation pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Cd42; GP; GP-IX; GPIX; MGC130579; platelet glycoprotein IX
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,753,115 - 87,756,768 (+)NCBIGRCm39mm39
GRCm38687,776,131 - 87,779,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,778,072 - 87,779,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,728,130 - 87,729,756 (+)NCBIGRCm37mm9NCBIm37
MGSCv36687,743,777 - 87,745,403 (+)NCBImm8
Celera689,715,360 - 89,716,986 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:9690810   PMID:10981960   PMID:12466851   PMID:12477932   PMID:16757682   PMID:19377075   PMID:21037087   PMID:21267068   PMID:21576699   PMID:22995516   PMID:23176290   PMID:24051142  
PMID:24194600   PMID:24504734   PMID:25393502   PMID:27626380  


Genomics

Comparative Map Data
Gp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,753,115 - 87,756,768 (+)NCBIGRCm39mm39
GRCm38687,776,131 - 87,779,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,778,072 - 87,779,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv37687,728,130 - 87,729,756 (+)NCBIGRCm37mm9NCBIm37
MGSCv36687,743,777 - 87,745,403 (+)NCBImm8
Celera689,715,360 - 89,716,986 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
GP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3129,060,767 - 129,062,406 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl3129,060,779 - 129,062,406 (+)EnsemblGRCh38hg38GRCh38
GRCh383129,055,449 - 129,062,411 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373128,775,459 - 128,781,254 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh373128,779,622 - 128,781,249 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,262,335 - 130,263,939 (+)NCBINCBI36hg18NCBI36
Build 343130,262,342 - 130,263,945NCBI
Celera3127,211,950 - 127,213,558 (+)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3126,166,125 - 126,167,732 (+)NCBIHuRef
CHM1_13128,743,040 - 128,744,684 (+)NCBICHM1_1
Gp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24120,235,539 - 120,236,874 (+)NCBI
Rnor_6.0 Ensembl4119,680,112 - 119,682,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04119,680,671 - 119,682,006 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04184,931,999 - 184,933,334 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,965,797 - 121,967,132 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4109,196,129 - 109,197,464 (+)NCBICelera
Cytogenetic Map4q34NCBI
Gp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,478,165 - 10,479,425 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,478,165 - 10,479,425 (-)NCBIChiLan1.0ChiLan1.0
GP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13133,479,202 - 133,480,843 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,480,173 - 133,480,706 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03126,118,762 - 126,122,732 (+)NCBIMhudiblu_PPA_v0panPan3
GP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,027,790 - 3,029,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Gp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936798170,654 - 171,625 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,560,012 - 71,562,779 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,558,768 - 71,565,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,213,436 - 79,213,825 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GP9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,000,620 - 52,013,570 (-)NCBI
ChlSab1.1 Ensembl2252,000,758 - 52,001,291 (-)Ensembl
Gp9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247817,579,824 - 7,581,516 (-)NCBI

Position Markers
PMC129049P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,779,068 - 87,779,403UniSTSGRCm38
MGSCv37687,729,062 - 87,729,397UniSTSGRCm37
Celera689,716,292 - 89,716,627UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.0UniSTS
AB007464  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,779,637 - 87,779,741UniSTSGRCm38
MGSCv37687,729,631 - 87,729,735UniSTSGRCm37
Celera689,716,861 - 89,716,965UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.0UniSTS
Whitehead/MRC_RH6909.47UniSTS
RH137081  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,779,587 - 87,779,747UniSTSGRCm38
MGSCv37687,729,581 - 87,729,741UniSTSGRCm37
Celera689,716,811 - 89,716,971UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.0UniSTS
Gp9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,779,182 - 87,779,509UniSTSGRCm38
MGSCv37687,729,176 - 87,729,503UniSTSGRCm37
Celera689,716,406 - 89,716,733UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.0UniSTS
UniSTS:490558  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,778,141 - 87,779,596UniSTSGRCm38
MGSCv37687,728,135 - 87,729,590UniSTSGRCm37
Celera689,715,365 - 89,716,820UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:166
Interacting mature miRNAs:180
Transcripts:ENSMUST00000032133
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032133   ⟹   ENSMUSP00000032133
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,778,072 - 87,779,768 (+)Ensembl
RefSeq Acc Id: NM_018762   ⟹   NP_061232
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,755,052 - 87,756,744 (+)NCBI
GRCm38687,778,070 - 87,779,762 (+)NCBI
MGSCv37687,728,130 - 87,729,756 (+)RGD
Celera689,715,360 - 89,716,986 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506394   ⟹   XP_006506457
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,753,115 - 87,756,768 (+)NCBI
GRCm38687,776,131 - 87,779,786 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241410   ⟹   XP_011239712
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,753,115 - 87,756,768 (+)NCBI
GRCm38687,776,131 - 87,779,786 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321682   ⟹   XP_017177171
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,753,748 - 87,756,768 (+)NCBI
GRCm38687,776,760 - 87,779,786 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_061232   ⟸   NM_018762
- Peptide Label: precursor
- UniProtKB: O88186 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506457   ⟸   XM_006506394
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011239712   ⟸   XM_011241410
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017177171   ⟸   XM_017321682
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000032133   ⟸   ENSMUST00000032133
Protein Domains
LRRCT   LRRNT

Promoters
RGD ID:6839404
Promoter ID:MM_KWN:46781
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:NM_018762
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,727,796 - 87,728,296 (+)MPROMDB
RGD ID:6890342
Promoter ID:EPDNEW_M8622
Type:initiation region
Name:Gp9_1
Description:Mus musculus glycoprotein 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,778,099 - 87,778,159EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860137 AgrOrtholog
Ensembl Genes ENSMUSG00000030054 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000032133 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032133 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot
  Leu-rich_rpt UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
  LRRNT UniProtKB/Swiss-Prot
KEGG Report mmu:54368 UniProtKB/Swiss-Prot
MGD MGI:1860137 ENTREZGENE
NCBI Gene 54368 ENTREZGENE
Pfam LRR_8 UniProtKB/Swiss-Prot
  LRRNT UniProtKB/Swiss-Prot
PhenoGen Gp9 PhenoGen
SMART LRRCT UniProtKB/Swiss-Prot
  LRRNT UniProtKB/Swiss-Prot
UniProt GPIX_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE