Gp9 (glycoprotein 9 (platelet)) - Rat Genome Database

Name: Gp9
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gp9 (glycoprotein 9 (platelet)) Mus musculus

Analyze

Symbol:

Gp9

Name:

glycoprotein 9 (platelet)

RGD ID:

1615922

MGI Page

MGI

Description:

Predicted to be involved in blood coagulation and cell adhesion. Predicted to localize to integral component of membrane. Is expressed in several structures, including brain; foregut; hemolymphoid system; liver; and male reproductive gland or organ. Human ortholog(s) of this gene implicated in Bernard-Soulier syndrome. Orthologous to human GP9 (glycoprotein IX platelet); PARTICIPATES IN platelet aggregation pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

Cd42; GP; GP-IX; GPIX; MGC130579; platelet glycoprotein IX

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GP9 (glycoprotein IX platelet)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Rattus norvegicus (Norway rat):	Gp9 (glycoprotein IX (platelet))	HGNC	EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Gp9 (glycoprotein IX platelet)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GP9 (glycoprotein IX platelet)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GP9 (glycoprotein IX platelet)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gp9 (glycoprotein IX platelet)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GP9 (glycoprotein IX platelet)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	GP9 (glycoprotein IX platelet)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gp9 (glycoprotein IX platelet)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GP9 (glycoprotein IX platelet)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Rattus norvegicus (Norway rat):	Gp9 (glycoprotein IX (platelet))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	gp9 (glycoprotein IX (platelet))	Alliance	DIOPT (ZFIN)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	87,753,115 - 87,756,768 (+)	NCBI	GRCm39		mm39
GRCm38	6	87,776,131 - 87,779,786 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	87,778,072 - 87,779,768 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	87,728,130 - 87,729,756 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	87,743,777 - 87,745,403 (+)	NCBI			mm8
Celera	6	89,715,360 - 89,716,986 (+)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI
cM Map	6	39.13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bernard-Soulier syndrome (ISO)

Bernard-Soulier Syndrome, Type B (ISO)

Bernard-Soulier Syndrome, Type C (ISO)

thrombocytopenia (ISO)

Thrombocytopenic Purpura (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-diaminodiphenylmethane (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (EXP)

Benzo[k]fluoranthene (EXP)

bisphenol A (ISO)

carbon nanotube (EXP)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

doxorubicin (ISO)

endosulfan (ISO)

nickel sulfate (ISO)

paracetamol (EXP)

tebuconazole (ISO)

titanium dioxide (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

blood coagulation (IEA)

cell adhesion (IEA)

hemostasis (IEA)

Cellular Component

integral component of membrane (IEA)

membrane (IEA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cell-extracellular matrix signaling pathway (IEA)

platelet aggregation pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased mean platelet volume (IEA)

increased spleen weight (IEA)

References

References - curated


1.	Boeckelmann D, etal., Blood Cells Mol Dis. 2017 Sep;67:69-74. doi: 10.1016/j.bcmd.2017.01.010. Epub 2017 Jan 22.
2.	He Y, etal., Clin Chim Acta. 2013 Jan 16;415:176-80. doi: 10.1016/j.cca.2012.10.035. Epub 2012 Oct 25.
3.	Noda M, etal., Thromb Haemost. 1996 Dec;76(6):874-8.
4.	OMIM Disease Annotation Pipeline
5.	Pipeline to import KEGG annotations from KEGG into RGD
6.	RGD automated import pipeline
7.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	RGD automated import pipeline for gene-chemical interactions
9.	Wright SD, etal., Blood. 1993 May 1;81(9):2339-47.

Additional References at PubMed

PMID:9690810	PMID:10981960	PMID:12466851	PMID:12477932	PMID:16757682	PMID:19377075	PMID:21037087	PMID:21267068	PMID:21576699	PMID:22995516	PMID:23176290	PMID:24051142
PMID:24194600	PMID:24504734	PMID:25393502	PMID:27626380

Genomics

Comparative Map Data

Gp9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	87,753,115 - 87,756,768 (+)	NCBI	GRCm39		mm39
GRCm38	6	87,776,131 - 87,779,786 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	87,778,072 - 87,779,768 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	87,728,130 - 87,729,756 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	87,743,777 - 87,745,403 (+)	NCBI			mm8
Celera	6	89,715,360 - 89,716,986 (+)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI
cM Map	6	39.13	NCBI

GP9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	129,060,767 - 129,062,406 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	3	129,060,779 - 129,062,406 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	129,055,449 - 129,062,411 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	128,775,459 - 128,781,254 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	3	128,779,622 - 128,781,249 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	130,262,335 - 130,263,939 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	3	130,262,342 - 130,263,945	NCBI
Celera	3	127,211,950 - 127,213,558 (+)	NCBI
Cytogenetic Map	3	q21.3	NCBI
HuRef	3	126,166,125 - 126,167,732 (+)	NCBI		HuRef
CHM1_1	3	128,743,040 - 128,744,684 (+)	NCBI		CHM1_1

Gp9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	120,235,539 - 120,236,874 (+)	NCBI
Rnor_6.0 Ensembl	4	119,680,112 - 119,682,547 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	119,680,671 - 119,682,006 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	184,931,999 - 184,933,334 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	121,965,797 - 121,967,132 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	109,196,129 - 109,197,464 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Gp9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	10,478,165 - 10,479,425 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	10,478,165 - 10,479,425 (-)	NCBI	ChiLan1.0	ChiLan1.0

GP9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	133,479,202 - 133,480,843 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	133,480,173 - 133,480,706 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	126,118,762 - 126,122,732 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

GP9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	3,027,790 - 3,029,496 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Gp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936798	170,654 - 171,625 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GP9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	71,560,012 - 71,562,779 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	71,558,768 - 71,565,134 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	79,213,436 - 79,213,825 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GP9
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	52,000,620 - 52,013,570 (-)	NCBI
ChlSab1.1 Ensembl	22	52,000,758 - 52,001,291 (-)	Ensembl

Gp9
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624781	7,579,824 - 7,581,516 (-)	NCBI

Position Markers

PMC129049P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	87,779,068 - 87,779,403	UniSTS	GRCm38
MGSCv37	6	87,729,062 - 87,729,397	UniSTS	GRCm37
Celera	6	89,716,292 - 89,716,627	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	37.0	UniSTS

AB007464

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	87,779,637 - 87,779,741	UniSTS	GRCm38
MGSCv37	6	87,729,631 - 87,729,735	UniSTS	GRCm37
Celera	6	89,716,861 - 89,716,965	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	37.0	UniSTS
Whitehead/MRC_RH	6	909.47	UniSTS

RH137081

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	87,779,587 - 87,779,747	UniSTS	GRCm38
MGSCv37	6	87,729,581 - 87,729,741	UniSTS	GRCm37
Celera	6	89,716,811 - 89,716,971	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	37.0	UniSTS

Gp9

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	87,779,182 - 87,779,509	UniSTS	GRCm38
MGSCv37	6	87,729,176 - 87,729,503	UniSTS	GRCm37
Celera	6	89,716,406 - 89,716,733	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	37.0	UniSTS

UniSTS:490558

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	87,778,141 - 87,779,596	UniSTS	GRCm38
MGSCv37	6	87,728,135 - 87,729,590	UniSTS	GRCm37
Celera	6	89,715,365 - 89,716,820	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	37.0	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78629504	121115387	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81500000	102200000	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83713869	147052561	Mouse
11251720	Ewc4_m	ethanol withdrawal and consumption 4 (mouse)					6	84122513	118122513	Mouse
1301687	Mnic2_m	macronutrient intake (mouse)			Not determined		6	86806805	113544602	Mouse
1301744	Hdlq11_m	HDL QTL 11 (mouse)			Not determined		6	87503360	121503555	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	190
Count of miRNA genes:	166
Interacting mature miRNAs:	180
Transcripts:	ENSMUST00000032133
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_018762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006506394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011241410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017321682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA184800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB007464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC158626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC111106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000032133 ⟹ ENSMUSP00000032133

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	87,778,072 - 87,779,768 (+)	Ensembl

RefSeq Acc Id:

NM_018762 ⟹ NP_061232

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,755,052 - 87,756,744 (+)	NCBI
GRCm38	6	87,778,070 - 87,779,762 (+)	NCBI
MGSCv37	6	87,728,130 - 87,729,756 (+)	RGD
Celera	6	89,715,360 - 89,716,986 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

AGCAGCCACACTGCCAGCTCACACAGCTCACACACACCACCACCACCGCAGCCTTGAACAGGAT
GGTACCAGCCCACAAAAGGTGTGCCCCAGCCAAGGCCTCACAGCCTGCCTCCTGGATGACTACC
TGGGGCCTCCTGTTTCTGCTCTGGCCTGCGACCACAGATACTCAGGCTTGCCCCAGGCCCTGTA
CCTGCCAGTCCTTGGAAACCATGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCT
GCCCGTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCCA
CCAGGTGCCTTCGACCACTTGCCTCAGCTGTGGGACCTGGATGTGACACACAACCCCTGGCACT
GTGACTGCAGCCTCACCTACCTGCGCCTCTGGCTGGAGGACCACATGCCCGAGGCCCTAATGCA
TGTGTACTGTGCCAGCCCTGACTTGGCCACCAGGCGCCCGCTGGGCCAGCTGACAGGTTATGAG
CTGGGCAGCTGTGGCTGGAAGCTGCCACCATCCTGGGCCTATCCAGGGGTGTGGTGGGATGTGT
CACTAGTGGCTGTGGCTGTGCTGGGCCTGATTCTGCTGGCTGGTCTATTGAACACATTTACAGA
GTCCAGGAACTGAGCCTAGCCCATAAAACCAGGGAGAGCCCAGGTCCCCAGAAGCATCAGCCCC
AGTCAGCCCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCATGGGCAAAGACAC
TTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGAGACCTAAATCTCACCTCCACAGC
CTTGCCGTGCACACACACAAATAAATAAATGTAATTTTAAAAGAC

hide sequence

RefSeq Acc Id:

XM_006506394 ⟹ XP_006506457

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,753,115 - 87,756,768 (+)	NCBI
GRCm38	6	87,776,131 - 87,779,786 (+)	NCBI

Sequence:

show sequence

GATGTGGCTTTAGTCACAGTGGAAACTGGAGAGTCCAGGAGAGAATGGGCTCTGGATGACCTAT
TTTGCCAAGAAAAAAAATACTTATCTATGGCTGTCCATATGGCTCTGGGACCCCAAACCCAGGC
CCTTGCACATTAGGCAAGAGTTCTATGGAAGTCTTAGGAACCTGAACAGGCCTGGTCAGGAGCA
CAGCCTGGGCGCTGTAGACCCCCATTCACCCAGGGACTCTGGCCCCACCTTGAGGAAAAACCAG
CTACCCTGAAGATGGGCAGATCCGTGAAGATTCCTGATGCCCAAGGCTCTACCATAAAGGGAAG
AAACACTCACAGAGGCTGAGGCCAATCAGGGGCAGAGTCCTCACAAGAGTATGAAGGTCCGATT
TTGATTAATAGCTTGTAATACCAAAACCATTCATTAAACTGAAATGGGAGTGAAAACAGACATC
ATGCTCAAGTGGAAGAGGCTATAAAAGTAACATGAGATAAATTAGTCTCCTGTCTCCGAGAGGC
TCAGCCCTGCAAACCTGCAACTCCGTGAGAAACAGGAAAGAGAGGGGCCCAACAGGTGCAAAAG
GCACCATGGAGAGAAAGGAGCCTCCCTCAGCATCTTTAGAGAGAGGGAGGACTATAAATAGACA
TTCACACCACACCTGGGGAGGTAAAAGCATCAGGACCATCGCCTGAATCTACAAAGGAAAACTC
ACAGCCAGCCATCACTCTCCTCCTCCTCCTCCTCCGGGAAGTCCTCCCCAACTACTAGCACCAG
GCAAGGGACACCTTGATTGGCCCACAGACCCATCACACAAGACCACAGGCTGCTTGAGGCAGCA
GCCACACTGCCAGCTCACACAGCTCACACACACCACCACCACCGCAGCCTTGAACAGGATGGTA
CCAGCCCACAAAAGGTGTGCCCCAGCCAAGGCCTCACAGCCTGCCTCCTGGATGACTACCTGGG
GCCTCCTGTTTCTGCTCTGGCCTGCGACCACAGATACTCAGGCTTGCCCCAGGCCCTGTACCTG
CCAGTCCTTGGAAACCATGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCTGCCC
GTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCCACCAG
GTGCCTTCGACCACTTGCCTCAGCTGTGGGACCTGGATGTGACACACAACCCCTGGCACTGTGA
CTGCAGCCTCACCTACCTGCGCCTCTGGCTGGAGGACCACATGCCCGAGGCCCTAATGCATGTG
TACTGTGCCAGCCCTGACTTGGCCACCAGGCGCCCGCTGGGCCAGCTGACAGGTTATGAGCTGG
GCAGCTGTGGCTGGAAGCTGCCACCATCCTGGGCCTATCCAGGGGTGTGGTGGGATGTGTCACT
AGTGGCTGTGGCTGTGCTGGGCCTGATTCTGCTGGCTGGTCTATTGAACACATTTACAGAGTCC
AGGAACTGAGCCTAGCCCATAAAACCAGGGAGAGCCCAGGTCCCCAGAAGCATCAGCCCCAGTC
AGCCCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCATGGGCAAAGACACTTGC
TGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGAGACCTAAATCTCACCTCCACAGCCTTG
CCGTGCACACACACAAATAAATAAATGTAATTTTAAAAGACAATAAACCCTCTACACAGCCTTT
A

hide sequence

RefSeq Acc Id:

XM_011241410 ⟹ XP_011239712

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,753,115 - 87,756,768 (+)	NCBI
GRCm38	6	87,776,131 - 87,779,786 (+)	NCBI

Sequence:

show sequence

GATGTGGCTTTAGTCACAGTGGAAACTGGAGAGTCCAGGAGAGAATGGGCTCTGGATGACCTAT
TTTGCCAAGAAAAAAAATACTTATCTATGGCTGTCCATATGGCTCTGGGACCCCAAACCCAGGC
CCTTGCACATTAGGCAAGAGTTCTATGGTGAGTTGTACGCTTAACACCAGCCCCCACAGGCATT
CTTACTTTATGTTGGGGTTGGAGACATTTTTTTAATTTTCTTCTTCCTATTCTTTTGAACATTT
TCCTGTAAGAAAAATAATTTGTGGAGTATTTTTTTTTGTTGTTTTTGCTGCTGCCGTTGCTGTT
GCTGCTGCAACTGTTATTGCTAAAAATAAGGAAGTCTTAGGAACCTGAACAGGCCTGGTCAGGA
GCACAGCCTGGGCGCTGTAGACCCCCATTCACCCAGGGACTCTGGCCCCACCTTGAGGAAAAAC
CAGCTACCCTGAAGATGGGCAGATCCGTGAAGATTCCTGATGCCCAAGGCTCTACCATAAAGGG
AAGAAACACTCACAGAGGCTGAGGCCAATCAGGGGCAGAGTCCTCACAAGAGTATGAAGGTCCG
ATTTTGATTAATAGCTTGTAATACCAAAACCATTCATTAAACTGAAATGGGAGTGAAAACAGAC
ATCATGCTCAAGTGGAAGAGGCTATAAAAGTAACATGAGATAAATTAGTCTCCTGTCTCCGAGA
GGCTCAGCCCTGCAAACCTGCAACTCCGTGAGAAACAGGAAAGAGAGGGGCCCAACAGGTGCAA
AAGGCACCATGGAGAGAAAGGAGCCTCCCTCAGCATCTTTAGAGAGAGGGAGGACTATAAATAG
ACATTCACACCACACCTGGGGAGGTAAAAGCATCAGGACCATCGCCTGAATCTACAAAGGAAAA
CTCACAGCCAGCCATCACTCTCCTCCTCCTCCTCCTCCGGGAAGTCCTCCCCAACTACTAGCAC
CAGGCAAGGGACACCTTGATTGGCCCACAGACCCATCACACAAGACCACAGGCTGCTTGAGGCA
GCAGCCACACTGCCAGCTCACACAGCTCACACACACCACCACCACCGCAGCCTTGAACAGGATG
GTACCAGCCCACAAAAGGTGTGCCCCAGCCAAGGCCTCACAGCCTGCCTCCTGGATGACTACCT
GGGGCCTCCTGTTTCTGCTCTGGCCTGCGACCACAGATACTCAGGCTTGCCCCAGGCCCTGTAC
CTGCCAGTCCTTGGAAACCATGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCACAGCCCTG
CCCGTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCAGTGCCAC
CAGGTGCCTTCGACCACTTGCCTCAGCTGTGGGACCTGGATGTGACACACAACCCCTGGCACTG
TGACTGCAGCCTCACCTACCTGCGCCTCTGGCTGGAGGACCACATGCCCGAGGCCCTAATGCAT
GTGTACTGTGCCAGCCCTGACTTGGCCACCAGGCGCCCGCTGGGCCAGCTGACAGGTTATGAGC
TGGGCAGCTGTGGCTGGAAGCTGCCACCATCCTGGGCCTATCCAGGGGTGTGGTGGGATGTGTC
ACTAGTGGCTGTGGCTGTGCTGGGCCTGATTCTGCTGGCTGGTCTATTGAACACATTTACAGAG
TCCAGGAACTGAGCCTAGCCCATAAAACCAGGGAGAGCCCAGGTCCCCAGAAGCATCAGCCCCA
GTCAGCCCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCATGGGCAAAGACACT
TGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGAGACCTAAATCTCACCTCCACAGCC
TTGCCGTGCACACACACAAATAAATAAATGTAATTTTAAAAGACAATAAACCCTCTACACAGCC
TTTA

hide sequence

RefSeq Acc Id:

XM_017321682 ⟹ XP_017177171

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,753,748 - 87,756,768 (+)	NCBI
GRCm38	6	87,776,760 - 87,779,786 (+)	NCBI

Sequence:

show sequence

CCAGAGCTCACCCAGTGAGAGTTCTGTATATATGCAGCCCCTATTCTGAGAGCAGAAGTGGACA
GATGCTGCAAAGAGAGCATGGGGCTTCAATAGGTCCTGCCACCAGCCTGGTCCAAAGGCCTGTC
TGTCTACAGGGGAGGGCAGCAGCTGGCCTGCGAAAGTGGGAGAGGACTGTGTAAGAGAAGGAGG
AGGTGCTGTCCACCTCTGCCCTGACCTGGGCCCATATGACTTCTCCATGAAGAGTGCACAGGGA
TCCAGCAGCAGACCATGTTGGTGGCCTCTGTCCTACTGACACAATATCAGCCTCTGTCCCTGTG
CCTTAGATGGTGGCACTGCTGCTCCCTGCCTCAGTTTCCCTCTCCAACTCTACACCCGCCTGAA
TCTCTCCAGATCAAGGAGCCAGGATACTTTTATTGTGTCTGTTGATCTTGGCCAACACCAGCCG
TGACCACAGGGTTGATCAGGGGTCTCTCACTCTCCCCAGTGGTCCATCTTTCCTCCCACAGTCC
CAGGAGCCCCAGCTCCTGGACATGTTACTTCAGCCCAGGCTTCACCAGTGGCCCCCGTTCTGTG
CCCATGAACTCTGTCATCTGCTAAAAATCCATTGATTTGGTTAATATTCACAACTGTGGGGGTT
TTATGATTTGTTTAAAAAAATGCAGATTTGAATTTTAATTGCATAATGATTCTATTTCACCATT
AGGTCCGATTTTGATTAATAGCTTGTAATACCAAAACCATTCATTAAACTGAAATGGGAGTGAA
AACAGACATCATGCTCAAGTGGAAGAGGCTATAAAAGTAACATGAGATAAATTAGTCTCCTGTC
TCCGAGAGGCTCAGCCCTGCAAACCTGCAACTCCGTGAGAAACAGGAAAGAGAGGGGCCCAACA
GGTGCAAAAGGCACCATGGAGAGAAAGGAGCCTCCCTCAGCATCTTTAGAGAGAGGGAGGACTA
TAAATAGACATTCACACCACACCTGGGGAGGTAAAAGCATCAGGACCATCGCCTGAATCTACAA
AGGAAAACTCACAGCCAGCCATCACTCTCCTCCTCCTCCTCCTCCGGGAAGTCCTCCCCAACTA
CTAGCACCAGGCAAGGGACACCTTGATTGGCCCACAGACCCATCACACAAGACCACAGGCTGCT
TGAGGCAGCAGCCACACTGCCAGCTCACACAGCTCACACACACCACCACCACCGCAGCCTTGAA
CAGGATGGTACCAGCCCACAAAAGGTGTGCCCCAGCCAAGGCCTCACAGCCTGCCTCCTGGATG
ACTACCTGGGGCCTCCTGTTTCTGCTCTGGCCTGCGACCACAGATACTCAGGCTTGCCCCAGGC
CCTGTACCTGCCAGTCCTTGGAAACCATGGGGTTAAAGGTGAACTGTGAGGGGCAAGGCCTCAC
AGCCCTGCCCGTGATACCAGCGCACACTCGCCAGCTCCTGCTGGCCAACAATAGCCTGCGTTCA
GTGCCACCAGGTGCCTTCGACCACTTGCCTCAGCTGTGGGACCTGGATGTGACACACAACCCCT
GGCACTGTGACTGCAGCCTCACCTACCTGCGCCTCTGGCTGGAGGACCACATGCCCGAGGCCCT
AATGCATGTGTACTGTGCCAGCCCTGACTTGGCCACCAGGCGCCCGCTGGGCCAGCTGACAGGT
TATGAGCTGGGCAGCTGTGGCTGGAAGCTGCCACCATCCTGGGCCTATCCAGGGGTGTGGTGGG
ATGTGTCACTAGTGGCTGTGGCTGTGCTGGGCCTGATTCTGCTGGCTGGTCTATTGAACACATT
TACAGAGTCCAGGAACTGAGCCTAGCCCATAAAACCAGGGAGAGCCCAGGTCCCCAGAAGCATC
AGCCCCAGTCAGCCCATGCCATCAAAAGCCCACAGGGGGCAGGCTGAGGCCGCCTCATGGGCAA
AGACACTTGCTGTCCAGTCTAAAGACCTGGGTTTTATCCCCAGGAGAGACCTAAATCTCACCTC
CACAGCCTTGCCGTGCACACACACAAATAAATAAATGTAATTTTAAAAGACAATAAACCCTCTA
CACAGCCTTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_061232	(Get FASTA)	NCBI Sequence Viewer
	XP_006506457	(Get FASTA)	NCBI Sequence Viewer
	XP_011239712	(Get FASTA)	NCBI Sequence Viewer
	XP_017177171	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI11107	(Get FASTA)	NCBI Sequence Viewer
	BAA31694	(Get FASTA)	NCBI Sequence Viewer
	EDK99218	(Get FASTA)	NCBI Sequence Viewer
	O88186	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_061232 ⟸ NM_018762
- Peptide Label:	precursor
- UniProtKB:	O88186 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTTWGLLFLLWPATTDTQACPRPCTCQSLETMGLKVNCEGQGLTALPVIPAHTRQLLLANNSLR SVPPGAFDHLPQLWDLDVTHNPWHCDCSLTYLRLWLEDHMPEALMHVYCASPDLATRRPLGQLT GYELGSCGWKLPPSWAYPGVWWDVSLVAVAVLGLILLAGLLNTFTESRN hide sequence

RefSeq Acc Id:	XP_006506457 ⟸ XM_006506394
- Peptide Label:	isoform X1
- Sequence:	show sequence MVPAHKRCAPAKASQPASWMTTWGLLFLLWPATTDTQACPRPCTCQSLETMGLKVNCEGQGLTA LPVIPAHTRQLLLANNSLRSVPPGAFDHLPQLWDLDVTHNPWHCDCSLTYLRLWLEDHMPEALM HVYCASPDLATRRPLGQLTGYELGSCGWKLPPSWAYPGVWWDVSLVAVAVLGLILLAGLLNTFT ESRN hide sequence

RefSeq Acc Id:	XP_011239712 ⟸ XM_011241410
- Peptide Label:	isoform X1
- Sequence:	show sequence MVPAHKRCAPAKASQPASWMTTWGLLFLLWPATTDTQACPRPCTCQSLETMGLKVNCEGQGLTA LPVIPAHTRQLLLANNSLRSVPPGAFDHLPQLWDLDVTHNPWHCDCSLTYLRLWLEDHMPEALM HVYCASPDLATRRPLGQLTGYELGSCGWKLPPSWAYPGVWWDVSLVAVAVLGLILLAGLLNTFT ESRN hide sequence

RefSeq Acc Id:	XP_017177171 ⟸ XM_017321682
- Peptide Label:	isoform X1
- Sequence:	show sequence MVPAHKRCAPAKASQPASWMTTWGLLFLLWPATTDTQACPRPCTCQSLETMGLKVNCEGQGLTA LPVIPAHTRQLLLANNSLRSVPPGAFDHLPQLWDLDVTHNPWHCDCSLTYLRLWLEDHMPEALM HVYCASPDLATRRPLGQLTGYELGSCGWKLPPSWAYPGVWWDVSLVAVAVLGLILLAGLLNTFT ESRN hide sequence

RefSeq Acc Id:

ENSMUSP00000032133 ⟸ ENSMUST00000032133

Protein Domains

LRRCT LRRNT

Promoters

RGD ID:

6839404

Promoter ID:

MM_KWN:46781

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_4Hour

Transcripts:

NM_018762

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	87,727,796 - 87,728,296 (+)	MPROMDB

RGD ID:

6890342

Promoter ID:

EPDNEW_M8622

Type:

initiation region

Name:

Gp9_1

Description:

Mus musculus glycoprotein 9 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	87,778,099 - 87,778,159	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1860137	AgrOrtholog
Ensembl Genes	ENSMUSG00000030054	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000032133	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000032133	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot
InterPro	Cys-rich_flank_reg_C	UniProtKB/Swiss-Prot
	Leu-rich_rpt	UniProtKB/Swiss-Prot
	LRR_dom_sf	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
KEGG Report	mmu:54368	UniProtKB/Swiss-Prot
MGD	MGI:1860137	ENTREZGENE
NCBI Gene	54368	ENTREZGENE
Pfam	LRR_8	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
PhenoGen	Gp9	PhenoGen
SMART	LRRCT	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
UniProt	GPIX_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)