Cnot10 (CCR4-NOT transcription complex, subunit 10) - Rat Genome Database

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Gene: Cnot10 (CCR4-NOT transcription complex, subunit 10) Rattus norvegicus
Analyze
Symbol: Cnot10
Name: CCR4-NOT transcription complex, subunit 10
RGD ID: 1359219
Description: Predicted to be involved in mRNA catabolic process and negative regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT10 (CCR4-NOT transcription complex subunit 10); PARTICIPATES IN microRNA pathway; RNA degradation pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CCR4-NOT transcription complex subunit 10; MGC94752; similar to RIKEN cDNA 2600001P13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,158,675 - 123,208,389 (-)NCBIGRCr8
mRatBN7.28114,280,486 - 114,330,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,280,490 - 114,330,107 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,897,595 - 119,947,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,096,843 - 118,146,352 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,939,676 - 115,989,176 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,634,681 - 122,696,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,634,685 - 122,679,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,945,846 - 122,008,281 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,007,192 - 119,057,079 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18119,026,930 - 119,076,816 (-)NCBI
Celera8113,527,188 - 113,576,800 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
CCR4-NOT complex  (IBA,IEA,ISO,ISS)
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. null JRS Domain-based curation
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes. Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.
Additional References at PubMed
PMID:19558367   PMID:19946888   PMID:23232451  


Genomics

Comparative Map Data
Cnot10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,158,675 - 123,208,389 (-)NCBIGRCr8
mRatBN7.28114,280,486 - 114,330,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,280,490 - 114,330,107 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,897,595 - 119,947,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,096,843 - 118,146,352 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,939,676 - 115,989,176 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,634,681 - 122,696,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,634,685 - 122,679,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,945,846 - 122,008,281 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,007,192 - 119,057,079 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18119,026,930 - 119,076,816 (-)NCBI
Celera8113,527,188 - 113,576,800 (-)NCBICelera
Cytogenetic Map8q32NCBI
CNOT10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,685,188 - 32,773,875 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,685,145 - 32,773,875 (+)EnsemblGRCh38hg38GRCh38
GRCh37332,726,680 - 32,815,367 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,701,702 - 32,790,358 (+)NCBINCBI36Build 36hg18NCBI36
Build 34332,701,701 - 32,790,358NCBI
Celera332,665,983 - 32,752,706 (+)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,664,190 - 32,751,210 (+)NCBIHuRef
CHM1_1332,676,649 - 32,765,344 (+)NCBICHM1_1
T2T-CHM13v2.0332,684,705 - 32,772,074 (+)NCBIT2T-CHM13v2.0
Cnot10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,414,942 - 114,469,289 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,414,946 - 114,469,252 (-)EnsemblGRCm39 Ensembl
GRCm389114,585,874 - 114,640,220 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,585,878 - 114,640,184 (-)EnsemblGRCm38mm10GRCm38
MGSCv379114,494,996 - 114,549,192 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,434,576 - 114,488,772 (-)NCBIMGSCv36mm8
Celera9115,059,918 - 115,114,610 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.72NCBI
Cnot10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554212,499 - 73,676 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554212,807 - 69,254 (+)NCBIChiLan1.0ChiLan1.0
CNOT10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,665,872 - 32,754,800 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,670,649 - 32,759,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,613,213 - 32,702,062 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1332,920,235 - 33,008,961 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl332,920,235 - 33,008,961 (+)Ensemblpanpan1.1panPan2
CNOT10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,984,505 - 4,058,649 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,984,505 - 4,058,384 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha234,027,897 - 4,102,491 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0234,245,548 - 4,320,695 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl234,245,548 - 4,320,662 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,079,756 - 4,153,988 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,210,638 - 4,285,515 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,180,196 - 4,254,825 (-)NCBIUU_Cfam_GSD_1.0
Cnot10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,982,502 - 190,054,221 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,121,019 - 23,193,871 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,121,036 - 23,192,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,649,746 - 18,736,068 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,649,725 - 18,736,075 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CNOT10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,186,062 - 77,279,011 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,186,013 - 77,286,079 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,555,268 - 50,650,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnot10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,758,887 - 10,835,280 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,758,676 - 10,835,156 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cnot10
256 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:37
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000013815
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8112834440118649220Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
RH130658  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28114,280,572 - 114,280,754 (+)MAPPERmRatBN7.2
Rnor_6.08122,634,768 - 122,634,949NCBIRnor6.0
Rnor_5.08121,945,933 - 121,946,114UniSTSRnor5.0
RGSC_v3.48119,007,279 - 119,007,460UniSTSRGSC3.4
Celera8113,527,275 - 113,527,456UniSTS
RH 3.4 Map81206.9UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000084133   ⟹   ENSRNOP00000074139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,280,517 - 114,330,107 (-)Ensembl
Rnor_6.0 Ensembl8122,634,960 - 122,679,720 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084568   ⟹   ENSRNOP00000074680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,280,490 - 114,323,602 (-)Ensembl
Rnor_6.0 Ensembl8122,634,685 - 122,679,714 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099029   ⟹   ENSRNOP00000093287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,311,737 - 114,330,107 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104715   ⟹   ENSRNOP00000094829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,280,490 - 114,329,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105984   ⟹   ENSRNOP00000077810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,280,490 - 114,326,638 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112024   ⟹   ENSRNOP00000081988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8114,280,490 - 114,324,425 (-)Ensembl
RefSeq Acc Id: NM_001007003   ⟹   NP_001007004
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,208,167 (-)NCBI
mRatBN7.28114,280,486 - 114,329,977 (-)NCBI
Rnor_6.08122,634,681 - 122,696,466 (-)NCBI
Rnor_5.08121,945,846 - 122,008,281 (-)NCBI
RGSC_v3.48119,007,192 - 119,057,079 (-)RGD
Celera8113,527,188 - 113,576,800 (-)RGD
Sequence:
RefSeq Acc Id: XM_039081620   ⟹   XP_038937548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,206,222 (-)NCBI
mRatBN7.28114,280,486 - 114,327,551 (-)NCBI
RefSeq Acc Id: XM_039081621   ⟹   XP_038937549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,206,219 (-)NCBI
mRatBN7.28114,280,486 - 114,325,935 (-)NCBI
RefSeq Acc Id: XM_039081622   ⟹   XP_038937550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,206,221 (-)NCBI
mRatBN7.28114,280,486 - 114,327,550 (-)NCBI
RefSeq Acc Id: XM_039081623   ⟹   XP_038937551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,206,225 (-)NCBI
mRatBN7.28114,280,486 - 114,327,552 (-)NCBI
RefSeq Acc Id: XM_039081624   ⟹   XP_038937552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,206,226 (-)NCBI
mRatBN7.28114,280,486 - 114,327,553 (-)NCBI
RefSeq Acc Id: XM_039081625   ⟹   XP_038937553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,208,294 (-)NCBI
mRatBN7.28114,280,486 - 114,330,109 (-)NCBI
RefSeq Acc Id: XM_039081626   ⟹   XP_038937554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,208,389 (-)NCBI
mRatBN7.28114,280,486 - 114,330,108 (-)NCBI
RefSeq Acc Id: XM_039081627   ⟹   XP_038937555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,208,295 (-)NCBI
mRatBN7.28114,280,486 - 114,330,110 (-)NCBI
RefSeq Acc Id: XM_039081628   ⟹   XP_038937556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,208,294 (-)NCBI
mRatBN7.28114,280,486 - 114,330,109 (-)NCBI
RefSeq Acc Id: XM_039081629   ⟹   XP_038937557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,176,200 - 123,206,229 (-)NCBI
mRatBN7.28114,298,018 - 114,327,553 (-)NCBI
RefSeq Acc Id: XM_039081630   ⟹   XP_038937558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,176,199 - 123,206,226 (-)NCBI
mRatBN7.28114,298,006 - 114,327,551 (-)NCBI
RefSeq Acc Id: XM_063265635   ⟹   XP_063121705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,206,222 (-)NCBI
RefSeq Acc Id: XM_063265636   ⟹   XP_063121706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,208,301 (-)NCBI
RefSeq Acc Id: XM_063265637   ⟹   XP_063121707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,208,294 (-)NCBI
RefSeq Acc Id: XM_063265638   ⟹   XP_063121708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,158,675 - 123,208,294 (-)NCBI
RefSeq Acc Id: XM_063265639   ⟹   XP_063121709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88123,176,201 - 123,206,228 (-)NCBI
RefSeq Acc Id: NP_001007004   ⟸   NM_001007003
- UniProtKB: Q5XIA4 (UniProtKB/Swiss-Prot),   A0A0G2K8P0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074680   ⟸   ENSRNOT00000084568
Ensembl Acc Id: ENSRNOP00000074139   ⟸   ENSRNOT00000084133
RefSeq Acc Id: XP_038937555   ⟸   XM_039081627
- Peptide Label: isoform X11
- UniProtKB: A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937556   ⟸   XM_039081628
- Peptide Label: isoform X13
- UniProtKB: A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937553   ⟸   XM_039081625
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K7B7 (UniProtKB/TrEMBL),   A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937554   ⟸   XM_039081626
- Peptide Label: isoform X8
- UniProtKB: A6I3P1 (UniProtKB/TrEMBL),   A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937552   ⟸   XM_039081624
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937551   ⟸   XM_039081623
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937548   ⟸   XM_039081620
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937550   ⟸   XM_039081622
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937549   ⟸   XM_039081621
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y6C7 (UniProtKB/TrEMBL),   A0A0G2K8P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937558   ⟸   XM_039081630
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038937557   ⟸   XM_039081629
- Peptide Label: isoform X14
Ensembl Acc Id: ENSRNOP00000077810   ⟸   ENSRNOT00000105984
Ensembl Acc Id: ENSRNOP00000081988   ⟸   ENSRNOT00000112024
Ensembl Acc Id: ENSRNOP00000094829   ⟸   ENSRNOT00000104715
Ensembl Acc Id: ENSRNOP00000093287   ⟸   ENSRNOT00000099029
RefSeq Acc Id: XP_063121706   ⟸   XM_063265636
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063121708   ⟸   XM_063265638
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063121707   ⟸   XM_063265637
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063121705   ⟸   XM_063265635
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121709   ⟸   XM_063265639
- Peptide Label: isoform X16

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIA4-F1-model_v2 AlphaFold Q5XIA4 1-744 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359219 AgrOrtholog
BioCyc Gene G2FUF-28920 BioCyc
Ensembl Genes ENSRNOG00000052305 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084133.2 UniProtKB/TrEMBL
  ENSRNOT00000084568.2 UniProtKB/TrEMBL
  ENSRNOT00000099029.1 UniProtKB/TrEMBL
  ENSRNOT00000104715.1 UniProtKB/TrEMBL
  ENSRNOT00000105984.1 UniProtKB/TrEMBL
  ENSRNOT00000112024.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7096219 IMAGE-MGC_LOAD
InterPro CNOT10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:316034 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94752 IMAGE-MGC_LOAD
NCBI Gene 316034 ENTREZGENE
PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12979 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cnot10 PhenoGen
RatGTEx ENSRNOG00000052305 RatGTEx
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K7B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K8P0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y6C7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWI5_RAT UniProtKB/TrEMBL
  A0A8I6AJC9_RAT UniProtKB/TrEMBL
  A0A8I6ANC7_RAT UniProtKB/TrEMBL
  A6I3P0_RAT UniProtKB/TrEMBL
  A6I3P1 ENTREZGENE, UniProtKB/TrEMBL
  A6I3P2_RAT UniProtKB/TrEMBL
  CNO10_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Cnot10  CCR4-NOT transcription complex, subunit 10  MGC94752  similar to RIKEN cDNA 2600001P13  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC94752  similar to RIKEN cDNA 2600001P13      Symbol and Name status set to provisional 70820 PROVISIONAL