CNOT10 (CCR4-NOT transcription complex subunit 10) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CNOT10 (CCR4-NOT transcription complex subunit 10) Chlorocebus sabaeus
Analyze
Symbol: CNOT10
Name: CCR4-NOT transcription complex subunit 10
RGD ID: 18677426
Description: INVOLVED IN mRNA catabolic process (inferred); negative regulation of translation (inferred); regulation of translation (inferred); PARTICIPATES IN microRNA pathway; FOUND IN CCR4-NOT complex (inferred); cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,186,062 - 77,279,011 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,186,013 - 77,286,079 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,555,268 - 50,650,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CNOT10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,186,062 - 77,279,011 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,186,013 - 77,286,079 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,555,268 - 50,650,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CNOT10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,685,188 - 32,773,875 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,685,145 - 32,773,875 (+)EnsemblGRCh38hg38GRCh38
GRCh37332,726,680 - 32,815,367 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,701,702 - 32,790,358 (+)NCBINCBI36Build 36hg18NCBI36
Build 34332,701,701 - 32,790,358NCBI
Celera332,665,983 - 32,752,706 (+)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,664,190 - 32,751,210 (+)NCBIHuRef
CHM1_1332,676,649 - 32,765,344 (+)NCBICHM1_1
T2T-CHM13v2.0332,684,705 - 32,772,074 (+)NCBIT2T-CHM13v2.0
Cnot10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,414,942 - 114,469,289 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,414,946 - 114,469,252 (-)EnsemblGRCm39 Ensembl
GRCm389114,585,874 - 114,640,220 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,585,878 - 114,640,184 (-)EnsemblGRCm38mm10GRCm38
MGSCv379114,494,996 - 114,549,192 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,434,576 - 114,488,772 (-)NCBIMGSCv36mm8
Celera9115,059,918 - 115,114,610 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.72NCBI
Cnot10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,158,675 - 123,208,389 (-)NCBIGRCr8
mRatBN7.28114,280,486 - 114,330,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,280,490 - 114,330,107 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,897,595 - 119,947,105 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,096,843 - 118,146,352 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,939,676 - 115,989,176 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,634,681 - 122,696,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,634,685 - 122,679,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,945,846 - 122,008,281 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,007,192 - 119,057,079 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18119,026,930 - 119,076,816 (-)NCBI
Celera8113,527,188 - 113,576,800 (-)NCBICelera
Cytogenetic Map8q32NCBI
Cnot10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554212,499 - 73,676 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554212,807 - 69,254 (+)NCBIChiLan1.0ChiLan1.0
CNOT10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,665,872 - 32,754,800 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,670,649 - 32,759,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,613,213 - 32,702,062 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1332,920,235 - 33,008,961 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl332,920,235 - 33,008,961 (+)Ensemblpanpan1.1panPan2
CNOT10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,984,505 - 4,058,649 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,984,505 - 4,058,384 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha234,027,897 - 4,102,491 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0234,245,548 - 4,320,695 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl234,245,548 - 4,320,662 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,079,756 - 4,153,988 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,210,638 - 4,285,515 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,180,196 - 4,254,825 (-)NCBIUU_Cfam_GSD_1.0
Cnot10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,982,502 - 190,054,221 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,121,019 - 23,193,871 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,121,036 - 23,192,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,649,746 - 18,736,068 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,649,725 - 18,736,075 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Cnot10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,758,887 - 10,835,280 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,758,676 - 10,835,156 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000007611   ⟹   ENSCSAP00000005785
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1577,186,013 - 77,286,079 (+)Ensembl
RefSeq Acc Id: XM_038002961   ⟹   XP_037858889
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604150,555,312 - 50,650,708 (+)NCBI
RefSeq Acc Id: XM_038002962   ⟹   XP_037858890
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604150,555,268 - 50,650,708 (+)NCBI
RefSeq Acc Id: XM_038002963   ⟹   XP_037858891
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604150,555,312 - 50,650,553 (+)NCBI
RefSeq Acc Id: XM_038002964   ⟹   XP_037858892
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604150,555,268 - 50,650,708 (+)NCBI
RefSeq Acc Id: XM_038002965   ⟹   XP_037858893
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604150,555,307 - 50,650,444 (+)NCBI
RefSeq Acc Id: XM_038002966   ⟹   XP_037858894
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604150,567,508 - 50,650,553 (+)NCBI
Ensembl Acc Id: ENSCSAP00000005785   ⟸   ENSCSAT00000007611
RefSeq Acc Id: XP_037858890   ⟸   XM_038002962
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RAZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858892   ⟸   XM_038002964
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RAZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858893   ⟸   XM_038002965
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RAZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858889   ⟸   XM_038002961
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RAZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858891   ⟸   XM_038002963
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RAZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037858894   ⟸   XM_038002966
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RAZ6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009525 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007611.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro CNOT10 UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene CNOT10 ENTREZGENE
PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 UniProtKB/TrEMBL
  PTHR12979 UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0D9RAZ6 ENTREZGENE, UniProtKB/TrEMBL