Carmil3 (capping protein regulator and myosin 1 linker 3) - Rat Genome Database

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Gene: Carmil3 (capping protein regulator and myosin 1 linker 3) Rattus norvegicus
Analyze
Symbol: Carmil3
Name: capping protein regulator and myosin 1 linker 3
RGD ID: 1359120
Description: Predicted to be involved in cell migration; regulation of Arp2/3 complex-mediated actin nucleation; and regulation of postsynapse assembly. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including glutamatergic synapse; lamellipodium; and postsynapse. Orthologous to human CARMIL3 (capping protein regulator and myosin 1 linker 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: capping protein regulator and myosin 1 linker protein 3; capping protein, Arp2/3 and myosin-I linker protein 3; leucine rich repeat containing 16B; leucine-rich repeat-containing protein 16B; LOC361041; Lrrc16b; similar to hypothetical protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,948,228 - 32,965,829 (+)NCBIGRCr8
mRatBN7.21528,978,440 - 28,995,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,979,007 - 28,996,225 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,824,712 - 30,841,566 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,971,920 - 31,988,774 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,214,268 - 30,231,120 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,167,146 - 34,184,799 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,167,945 - 34,184,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,057,562 - 38,075,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,622,020 - 33,639,257 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,645,651 - 33,654,958 (+)NCBI
Celera1528,555,021 - 28,571,875 (+)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO,ISS)
glutamatergic synapse  (IEA,ISO)
lamellipodium  (IBA)
plasma membrane  (IBA,IEA,ISO,ISS)
postsynapse  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:26578515  


Genomics

Comparative Map Data
Carmil3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,948,228 - 32,965,829 (+)NCBIGRCr8
mRatBN7.21528,978,440 - 28,995,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,979,007 - 28,996,225 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,824,712 - 30,841,566 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,971,920 - 31,988,774 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,214,268 - 30,231,120 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,167,146 - 34,184,799 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,167,945 - 34,184,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,057,562 - 38,075,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,622,020 - 33,639,257 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,645,651 - 33,654,958 (+)NCBI
Celera1528,555,021 - 28,571,875 (+)NCBICelera
Cytogenetic Map15p13NCBI
CARMIL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,052,009 - 24,069,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,052,009 - 24,069,729 (+)EnsemblGRCh38hg38GRCh38
GRCh371424,521,218 - 24,538,938 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,591,046 - 23,608,777 (+)NCBINCBI36Build 36hg18NCBI36
Celera144,385,685 - 4,403,416 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef144,636,144 - 4,653,872 (+)NCBIHuRef
CHM1_11424,519,882 - 24,537,614 (+)NCBICHM1_1
T2T-CHM13v2.01418,250,326 - 18,268,045 (+)NCBIT2T-CHM13v2.0
Carmil3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,728,108 - 55,745,729 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,728,108 - 55,745,729 (+)EnsemblGRCm39 Ensembl
GRCm381455,490,651 - 55,508,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,490,651 - 55,508,272 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,109,930 - 56,127,101 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,445,164 - 54,462,335 (+)NCBIMGSCv36mm8
Celera1453,296,005 - 53,313,185 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Carmil3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540936,324,474 - 36,340,931 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540936,324,141 - 36,341,648 (-)NCBIChiLan1.0ChiLan1.0
CARMIL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,624,130 - 24,642,560 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,830,041 - 4,847,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,954,274 - 22,971,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,954,274 - 22,971,981 (+)Ensemblpanpan1.1panPan2
CARMIL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,059,154 - 4,076,385 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,059,133 - 4,076,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,981,155 - 3,998,261 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,169,943 - 4,187,054 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,169,881 - 4,187,065 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,860,706 - 3,877,810 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,922,469 - 3,939,569 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,184,546 - 4,201,662 (+)NCBIUU_Cfam_GSD_1.0
Carmil3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,908,398 - 35,925,866 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722464,240 - 480,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722463,791 - 480,594 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARMIL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,222,528 - 75,241,242 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,222,528 - 75,241,243 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,492,975 - 80,511,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CARMIL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,034,790 - 1,053,169 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,035,947 - 1,052,844 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,717,257 - 12,735,362 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Carmil3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,459,756 - 8,477,287 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,460,032 - 8,477,298 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Carmil3
33 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:63
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000032252
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

Markers in Region
RH130081  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,977,811 - 28,977,998 (+)MAPPERmRatBN7.2
Rnor_6.01534,166,750 - 34,166,936NCBIRnor6.0
Rnor_5.01538,057,176 - 38,057,362UniSTSRnor5.0
RGSC_v3.41533,620,819 - 33,621,005UniSTSRGSC3.4
Celera1528,553,826 - 28,554,012UniSTS
RH 3.4 Map15260.81UniSTS
Cytogenetic Map15p13UniSTS
BE109917  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,988,398 - 28,988,579 (+)MAPPERmRatBN7.2
Rnor_6.01534,177,335 - 34,177,515NCBIRnor6.0
Rnor_5.01538,067,946 - 38,068,126UniSTSRnor5.0
RGSC_v3.41533,631,404 - 33,631,584UniSTSRGSC3.4
Celera1528,564,411 - 28,564,591UniSTS
RH 3.4 Map15260.2UniSTS
Cytogenetic Map15p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 82 81 50 24 50 6 208 96 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000032252   ⟹   ENSRNOP00000036263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,979,007 - 28,996,225 (+)Ensembl
Rnor_6.0 Ensembl1534,167,945 - 34,184,799 (+)Ensembl
RefSeq Acc Id: NM_001014138   ⟹   NP_001014160
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,975 - 32,965,829 (+)NCBI
mRatBN7.21528,979,007 - 28,995,863 (+)NCBI
Rnor_6.01534,167,945 - 34,184,799 (+)NCBI
Rnor_5.01538,057,562 - 38,075,771 (+)NCBI
Celera1528,555,021 - 28,571,875 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770681   ⟹   XP_008768903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,965,829 (+)NCBI
mRatBN7.21528,978,440 - 28,995,865 (+)NCBI
Rnor_6.01534,167,146 - 34,184,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770682   ⟹   XP_008768904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,965,829 (+)NCBI
mRatBN7.21528,978,440 - 28,995,865 (+)NCBI
Rnor_6.01534,167,146 - 34,184,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770683   ⟹   XP_008768905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,965,829 (+)NCBI
mRatBN7.21528,978,440 - 28,995,865 (+)NCBI
Rnor_6.01534,167,146 - 34,184,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770684   ⟹   XP_008768906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,965,829 (+)NCBI
mRatBN7.21528,978,440 - 28,995,865 (+)NCBI
Rnor_6.01534,167,146 - 34,184,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770685   ⟹   XP_008768907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,965,829 (+)NCBI
mRatBN7.21528,978,440 - 28,995,865 (+)NCBI
Rnor_6.01534,167,146 - 34,184,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770687   ⟹   XP_008768909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,950,656 - 32,965,829 (+)NCBI
mRatBN7.21528,980,713 - 28,995,865 (+)NCBI
Rnor_6.01534,169,671 - 34,184,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093487   ⟹   XP_038949415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,955,713 - 32,965,829 (+)NCBI
mRatBN7.21528,985,747 - 28,995,865 (+)NCBI
RefSeq Acc Id: XM_039093488   ⟹   XP_038949416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,956,633 - 32,965,829 (+)NCBI
mRatBN7.21528,986,428 - 28,995,865 (+)NCBI
RefSeq Acc Id: XM_063274404   ⟹   XP_063130474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,965,829 (+)NCBI
RefSeq Acc Id: XM_063274405   ⟹   XP_063130475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,965,829 (+)NCBI
RefSeq Acc Id: XM_063274406   ⟹   XP_063130476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,965,829 (+)NCBI
RefSeq Acc Id: XR_005493761
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,948,228 - 32,957,624 (+)NCBI
mRatBN7.21528,978,440 - 28,987,658 (+)NCBI
RefSeq Acc Id: NP_001014160   ⟸   NM_001014138
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768903   ⟸   XM_008770681
- Peptide Label: isoform X1
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768904   ⟸   XM_008770682
- Peptide Label: isoform X2
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768905   ⟸   XM_008770683
- Peptide Label: isoform X3
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768906   ⟸   XM_008770684
- Peptide Label: isoform X6
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768907   ⟸   XM_008770685
- Peptide Label: isoform X7
- UniProtKB: Q5XHY1 (UniProtKB/Swiss-Prot),   A0A0H2UHV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768909   ⟸   XM_008770687
- Peptide Label: isoform X9
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000036263   ⟸   ENSRNOT00000032252
RefSeq Acc Id: XP_038949415   ⟸   XM_039093487
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038949416   ⟸   XM_039093488
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063130475   ⟸   XM_063274405
- Peptide Label: isoform X5
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130474   ⟸   XM_063274404
- Peptide Label: isoform X4
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130476   ⟸   XM_063274406
- Peptide Label: isoform X8
- UniProtKB: A0A0H2UHV1 (UniProtKB/TrEMBL)
Protein Domains
CARMIL C-terminal   CARMIL pleckstrin homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XHY1-F1-model_v2 AlphaFold Q5XHY1 1-1373 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699667
Promoter ID:EPDNEW_R10190
Type:single initiation site
Name:Carmil3_1
Description:capping protein regulator and myosin 1 linker 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01534,167,875 - 34,167,935EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359120 AgrOrtholog
BioCyc Gene G2FUF-13724 BioCyc
Ensembl Genes ENSRNOG00000025518 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032252.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134958 IMAGE-MGC_LOAD
InterPro CARMIL_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CARMIL_PH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PP1-Reg/Actin-Interact_Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:95307 IMAGE-MGC_LOAD
NCBI Gene 361041 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT, ISOFORM F-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24112:SF43 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Carm_PH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CARMIL_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Carmil3 PhenoGen
RatGTEx ENSRNOG00000025518 RatGTEx
SMART LRR_RI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHV1 ENTREZGENE, UniProtKB/TrEMBL
  CARL3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-27 Carmil3  capping protein regulator and myosin 1 linker 3  Lrrc16b  leucine rich repeat containing 16B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-11-29 Lrrc16b  leucine-rich repeat-containing protein 16B  LOC361041  similar to hypothetical protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC361041  similar to hypothetical protein      Symbol and Name status set to provisional 70820 PROVISIONAL