Carmil3 (capping protein regulator and myosin 1 linker 3) - Rat Genome Database

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Gene: Carmil3 (capping protein regulator and myosin 1 linker 3) Mus musculus
Analyze
Symbol: Carmil3
Name: capping protein regulator and myosin 1 linker 3
RGD ID: 1616474
MGI Page MGI
Description: Involved in regulation of postsynapse assembly. Is active in glutamatergic synapse and postsynapse. Is expressed in central nervous system; dorsal root ganglion; extraembryonic component; and olfactory epithelium. Orthologous to human CARMIL3 (capping protein regulator and myosin 1 linker 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: capping protein regulator and myosin 1 linker protein 3; capping protein, Arp2/3 and myosin-I linker protein 3; leucine rich repeat containing 16B; leucine-rich repeat-containing protein 16B; Lrrc; Lrrc16b; mFLJ00240
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,728,108 - 55,745,729 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,728,108 - 55,745,729 (+)EnsemblGRCm39 Ensembl
GRCm381455,490,651 - 55,508,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,490,651 - 55,508,272 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,109,930 - 56,127,101 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,445,164 - 54,462,335 (+)NCBIMGSCv36mm8
Celera1453,296,005 - 53,313,185 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO,ISS)
glutamatergic synapse  (IDA,IMP)
lamellipodium  (IBA)
plasma membrane  (IBA,ISO,ISS)
postsynapse  (IDA,IMP)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15449545   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:18725516   PMID:21267068   PMID:21873635   PMID:30674877   PMID:31040226   PMID:32325033   PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Carmil3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,728,108 - 55,745,729 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,728,108 - 55,745,729 (+)EnsemblGRCm39 Ensembl
GRCm381455,490,651 - 55,508,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,490,651 - 55,508,272 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,109,930 - 56,127,101 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,445,164 - 54,462,335 (+)NCBIMGSCv36mm8
Celera1453,296,005 - 53,313,185 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
CARMIL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,052,009 - 24,069,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,052,009 - 24,069,729 (+)EnsemblGRCh38hg38GRCh38
GRCh371424,521,218 - 24,538,938 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,591,046 - 23,608,777 (+)NCBINCBI36Build 36hg18NCBI36
Celera144,385,685 - 4,403,416 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef144,636,144 - 4,653,872 (+)NCBIHuRef
CHM1_11424,519,882 - 24,537,614 (+)NCBICHM1_1
T2T-CHM13v2.01418,250,326 - 18,268,045 (+)NCBIT2T-CHM13v2.0
Carmil3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,948,228 - 32,965,829 (+)NCBIGRCr8
mRatBN7.21528,978,440 - 28,995,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,979,007 - 28,996,225 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,824,712 - 30,841,566 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,971,920 - 31,988,774 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,214,268 - 30,231,120 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,167,146 - 34,184,799 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,167,945 - 34,184,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,057,562 - 38,075,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,622,020 - 33,639,257 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,645,651 - 33,654,958 (+)NCBI
Celera1528,555,021 - 28,571,875 (+)NCBICelera
Cytogenetic Map15p13NCBI
Carmil3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540936,324,474 - 36,340,931 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540936,324,141 - 36,341,648 (-)NCBIChiLan1.0ChiLan1.0
CARMIL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,407,638 - 25,425,860 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,624,130 - 24,642,560 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,830,041 - 4,847,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,954,274 - 22,971,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,954,274 - 22,971,981 (+)Ensemblpanpan1.1panPan2
CARMIL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,059,154 - 4,076,385 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,059,133 - 4,076,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,981,155 - 3,998,261 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,169,943 - 4,187,054 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,169,881 - 4,187,065 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,860,706 - 3,877,810 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,922,469 - 3,939,569 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,184,546 - 4,201,662 (+)NCBIUU_Cfam_GSD_1.0
Carmil3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,908,398 - 35,925,866 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722464,240 - 480,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722463,791 - 480,594 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARMIL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,222,528 - 75,241,242 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,222,528 - 75,241,243 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,492,975 - 80,511,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CARMIL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,034,790 - 1,053,169 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,035,947 - 1,052,844 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,717,257 - 12,735,362 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Carmil3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,459,756 - 8,477,287 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,460,032 - 8,477,298 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Carmil3
417 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:278
Count of miRNA genes:216
Interacting mature miRNAs:243
Transcripts:ENSMUST00000076236
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse

Markers in Region
RH130081  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381455,490,016 - 55,490,202UniSTSGRCm38
MGSCv371456,108,853 - 56,109,039UniSTSGRCm37
Celera1453,294,928 - 53,295,114UniSTS
Cytogenetic Map14C3UniSTS
cM Map1428.0UniSTS
AI043103  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381455,490,091 - 55,490,180UniSTSGRCm38
MGSCv371456,108,928 - 56,109,017UniSTSGRCm37
Celera1453,295,003 - 53,295,092UniSTS
Cytogenetic Map14C3UniSTS
cM Map1428.0UniSTS
Whitehead/MRC_RH14610.58UniSTS
Whitehead/MRC_RH14597.64UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_383182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_383183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB248209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000076236   ⟹   ENSMUSP00000075587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,728,550 - 55,745,725 (+)Ensembl
GRCm38.p6 Ensembl1455,491,093 - 55,508,268 (+)Ensembl
Ensembl Acc Id: ENSMUST00000226388
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,734,468 - 55,745,721 (+)Ensembl
GRCm38.p6 Ensembl1455,497,011 - 55,508,264 (+)Ensembl
Ensembl Acc Id: ENSMUST00000226446   ⟹   ENSMUSP00000154051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,731,821 - 55,734,478 (+)Ensembl
GRCm38.p6 Ensembl1455,494,364 - 55,497,021 (+)Ensembl
Ensembl Acc Id: ENSMUST00000226653
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,741,936 - 55,744,890 (+)Ensembl
GRCm38.p6 Ensembl1455,504,479 - 55,507,433 (+)Ensembl
Ensembl Acc Id: ENSMUST00000226757   ⟹   ENSMUSP00000154517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,728,548 - 55,745,721 (+)Ensembl
GRCm38.p6 Ensembl1455,491,091 - 55,508,264 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,730,884 - 55,733,487 (+)Ensembl
GRCm38.p6 Ensembl1455,493,427 - 55,496,030 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,740,114 - 55,741,515 (+)Ensembl
GRCm38.p6 Ensembl1455,502,657 - 55,504,058 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,728,630 - 55,745,721 (+)Ensembl
GRCm38.p6 Ensembl1455,491,173 - 55,508,264 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,728,623 - 55,745,721 (+)Ensembl
GRCm38.p6 Ensembl1455,491,166 - 55,508,264 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,730,323 - 55,731,320 (+)Ensembl
GRCm38.p6 Ensembl1455,492,866 - 55,493,863 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228760
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,735,089 - 55,745,721 (+)Ensembl
GRCm38.p6 Ensembl1455,497,632 - 55,508,264 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228877   ⟹   ENSMUSP00000153889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,728,108 - 55,745,729 (+)Ensembl
GRCm38.p6 Ensembl1455,490,651 - 55,508,272 (+)Ensembl
RefSeq Acc Id: NM_001024645   ⟹   NP_001019816
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,527 - 55,745,729 (+)NCBI
GRCm381455,491,070 - 55,508,272 (+)NCBI
MGSCv371456,109,930 - 56,127,101 (+)RGD
Celera1453,296,005 - 53,313,185 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001374103   ⟹   NP_001361032
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,526 - 55,745,721 (+)NCBI
GRCm381455,491,069 - 55,508,264 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374104   ⟹   NP_001361033
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,526 - 55,745,721 (+)NCBI
GRCm381455,491,069 - 55,508,264 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374105   ⟹   NP_001361034
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,526 - 55,745,721 (+)NCBI
GRCm381455,491,069 - 55,508,264 (+)NCBI
Sequence:
RefSeq Acc Id: NR_155103
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,108 - 55,745,729 (+)NCBI
GRCm381455,490,651 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: NR_155104
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,527 - 55,745,729 (+)NCBI
GRCm381455,491,070 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: NR_164326
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,526 - 55,745,721 (+)NCBI
GRCm381455,491,069 - 55,508,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519047   ⟹   XP_006519110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519048   ⟹   XP_006519111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519049   ⟹   XP_006519112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519050   ⟹   XP_006519113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519053   ⟹   XP_006519116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519054   ⟹   XP_006519117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519055   ⟹   XP_006519118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,491,018 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519056   ⟹   XP_006519119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,492,872 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519058   ⟹   XP_006519121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,491,016 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519060   ⟹   XP_006519123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,734,451 - 55,745,729 (+)NCBI
GRCm381455,497,137 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519061   ⟹   XP_006519124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,736,551 - 55,745,729 (+)NCBI
GRCm381455,499,094 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316027   ⟹   XP_017171516
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247830   ⟹   XP_030103690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247832   ⟹   XP_030103692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,490,889 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247833   ⟹   XP_030103693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,491,055 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247834   ⟹   XP_030103694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,491,050 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247835   ⟹   XP_030103695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,491,016 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247836   ⟹   XP_030103696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,491,019 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158607   ⟹   XP_036014500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158608   ⟹   XP_036014501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158609   ⟹   XP_036014502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158610   ⟹   XP_036014503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938403
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938404
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,739,300 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938405
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938406
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
Sequence:
RefSeq Acc Id: XR_383182
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,745,729 (+)NCBI
GRCm381455,491,022 - 55,508,272 (+)NCBI
Sequence:
RefSeq Acc Id: XR_383183
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,728,279 - 55,739,300 (+)NCBI
GRCm381455,490,889 - 55,501,843 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001019816 (Get FASTA)   NCBI Sequence Viewer  
  NP_001361032 (Get FASTA)   NCBI Sequence Viewer  
  NP_001361033 (Get FASTA)   NCBI Sequence Viewer  
  NP_001361034 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519110 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519111 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519112 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519113 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519116 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519117 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519118 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519119 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519121 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519123 (Get FASTA)   NCBI Sequence Viewer  
  XP_006519124 (Get FASTA)   NCBI Sequence Viewer  
  XP_017171516 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103690 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103692 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103693 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103694 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103695 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103696 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014500 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014501 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014502 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014503 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAD21414 (Get FASTA)   NCBI Sequence Viewer  
  BAE28502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000075587
  ENSMUSP00000075587.6
  ENSMUSP00000153889.2
  ENSMUSP00000154051.2
  ENSMUSP00000154517.2
GenBank Protein Q3UFQ8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001019816   ⟸   NM_001024645
- Peptide Label: isoform 1
- UniProtKB: Q6KAP3 (UniProtKB/Swiss-Prot),   Q3UFQ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006519117   ⟸   XM_006519054
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006519110   ⟸   XM_006519047
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006519112   ⟸   XM_006519049
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006519113   ⟸   XM_006519050
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006519111   ⟸   XM_006519048
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006519116   ⟸   XM_006519053
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006519118   ⟸   XM_006519055
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006519119   ⟸   XM_006519056
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006519121   ⟸   XM_006519058
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_006519123   ⟸   XM_006519060
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006519124   ⟸   XM_006519061
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_017171516   ⟸   XM_017316027
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030103692   ⟸   XM_030247832
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030103690   ⟸   XM_030247830
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030103695   ⟸   XM_030247835
- Peptide Label: isoform X16
RefSeq Acc Id: XP_030103696   ⟸   XM_030247836
- Peptide Label: isoform X17
RefSeq Acc Id: XP_030103694   ⟸   XM_030247834
- Peptide Label: isoform X14
RefSeq Acc Id: XP_030103693   ⟸   XM_030247833
- Peptide Label: isoform X13
RefSeq Acc Id: NP_001361032   ⟸   NM_001374103
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001361033   ⟸   NM_001374104
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001361034   ⟸   NM_001374105
- Peptide Label: isoform 4
Ensembl Acc Id: ENSMUSP00000075587   ⟸   ENSMUST00000076236
Ensembl Acc Id: ENSMUSP00000154051   ⟸   ENSMUST00000226446
Ensembl Acc Id: ENSMUSP00000154517   ⟸   ENSMUST00000226757
Ensembl Acc Id: ENSMUSP00000153889   ⟸   ENSMUST00000228877
RefSeq Acc Id: XP_036014500   ⟸   XM_036158607
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036014501   ⟸   XM_036158608
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036014503   ⟸   XM_036158610
- Peptide Label: isoform X17
RefSeq Acc Id: XP_036014502   ⟸   XM_036158609
- Peptide Label: isoform X15
Protein Domains
CARMIL pleckstrin homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UFQ8-F1-model_v2 AlphaFold Q3UFQ8 1-1375 view protein structure

Promoters
RGD ID:8682412
Promoter ID:EPDNEW_M19237
Type:initiation region
Name:Carmil3_1
Description:Mus musculus capping protein regulator and myosin 1 linker 3, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381455,491,115 - 55,491,175EPDNEW
RGD ID:6825145
Promoter ID:MM_KWN:16947
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver
Transcripts:ENSMUST00000111408,   NM_001024645
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361456,109,081 - 56,109,872 (+)MPROMDB
RGD ID:6824720
Promoter ID:MM_KWN:16948
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:UC007TYP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361456,115,996 - 56,116,522 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2448573 AgrOrtholog
Ensembl Genes ENSMUSG00000022211 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076236 ENTREZGENE
  ENSMUST00000076236.7 UniProtKB/Swiss-Prot
  ENSMUST00000226388 ENTREZGENE
  ENSMUST00000226446.2 UniProtKB/TrEMBL
  ENSMUST00000226757 ENTREZGENE
  ENSMUST00000226757.2 UniProtKB/TrEMBL
  ENSMUST00000227312 ENTREZGENE
  ENSMUST00000228877 ENTREZGENE
  ENSMUST00000228877.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CARMIL_C UniProtKB/Swiss-Prot
  CARMIL_PH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PP1-Reg/Actin-Interact_Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:268747 UniProtKB/Swiss-Prot
MGD MGI:2448573 ENTREZGENE
NCBI Gene 268747 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT, ISOFORM F-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24112:SF43 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Carm_PH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CARMIL_C UniProtKB/Swiss-Prot
  LRR_6 UniProtKB/Swiss-Prot
PhenoGen Carmil3 PhenoGen
SMART LRR_RI UniProtKB/Swiss-Prot
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot
UniProt A0A2I3BPR2_MOUSE UniProtKB/TrEMBL
  A0A2I3BQ66_MOUSE UniProtKB/TrEMBL
  A0A2I3BRA2_MOUSE UniProtKB/TrEMBL
  CARL3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q6KAP3 ENTREZGENE
UniProt Secondary Q6KAP3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-09-13 Carmil3  capping protein regulator and myosin 1 linker 3  Lrrc16b  leucine rich repeat containing 16B  Symbol and/or name change 5135510 APPROVED