Ehf (ets homologous factor) - Rat Genome Database

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Gene: Ehf (ets homologous factor) Rattus norvegicus
Analyze
Symbol: Ehf
Name: ets homologous factor
RGD ID: 1310282
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in epithelial cell differentiation and positive regulation of transcription by RNA polymerase II. Predicted to be located in Golgi apparatus and nucleoplasm. Predicted to be active in nucleus. Used to study abdominal aortic aneurysm. Orthologous to human EHF (ETS homologous factor); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC295965
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,094,770 - 110,134,991 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3110,096,756 - 110,134,928 (-)EnsemblGRCr8
mRatBN7.2389,639,845 - 89,680,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,641,833 - 89,679,997 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx393,141,749 - 93,179,881 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03101,740,795 - 101,778,927 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0399,571,273 - 99,609,472 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0393,176,257 - 93,216,484 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,178,163 - 93,216,495 (-)Ensemblrn6Rnor6.0
Rnor_5.0399,819,123 - 99,859,309 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4388,518,893 - 88,557,065 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera388,711,028 - 88,749,198 (-)NCBICelera
RGSC_v3.1388,415,387 - 88,433,900 (-)NCBI
Cytogenetic Map3q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
antimonite  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
DDE  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
geraniol  (ISO)
glyphosate  (EXP)
inulin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
paclitaxel  (ISO)
perfluorodecanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
pirinixic acid  (ISO)
progesterone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vemurafenib  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Inhibition of experimental abdominal aortic aneurysm in the rat by use of decoy oligodeoxynucleotides suppressing activity of nuclear factor kappaB and ets transcription factors. Nakashima H, etal., Circulation. 2004 Jan 6;109(1):132-8. Epub 2003 Dec 8.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10644770   PMID:12477932   PMID:17027647  


Genomics

Comparative Map Data
Ehf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,094,770 - 110,134,991 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3110,096,756 - 110,134,928 (-)EnsemblGRCr8
mRatBN7.2389,639,845 - 89,680,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,641,833 - 89,679,997 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx393,141,749 - 93,179,881 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03101,740,795 - 101,778,927 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0399,571,273 - 99,609,472 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0393,176,257 - 93,216,484 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,178,163 - 93,216,495 (-)Ensemblrn6Rnor6.0
Rnor_5.0399,819,123 - 99,859,309 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4388,518,893 - 88,557,065 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera388,711,028 - 88,749,198 (-)NCBICelera
RGSC_v3.1388,415,387 - 88,433,900 (-)NCBI
Cytogenetic Map3q32NCBI
EHF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381134,621,093 - 34,663,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1134,617,044 - 34,663,386 (+)Ensemblhg38GRCh38
GRCh371134,642,640 - 34,684,835 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361134,599,244 - 34,639,657 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341134,599,243 - 34,639,657NCBI
Celera1134,789,745 - 34,831,979 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1134,339,885 - 34,382,105 (+)NCBIHuRef
CHM1_11134,641,504 - 34,683,732 (+)NCBICHM1_1
T2T-CHM13v2.01134,757,923 - 34,800,105 (+)NCBIT2T-CHM13v2.0
Ehf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,093,776 - 103,133,620 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,093,778 - 103,133,623 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382103,263,431 - 103,303,275 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2103,263,433 - 103,303,278 (-)Ensemblmm10GRCm38
MGSCv372103,103,590 - 103,143,353 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362103,064,272 - 103,104,035 (-)NCBIMGSCv36mm8
Celera2104,508,466 - 104,548,323 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.43NCBI
Ehf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542211,598,884 - 11,641,396 (-)Ensembl
ChiLan1.0NW_00495542211,599,245 - 11,640,828 (-)NCBIChiLan1.0ChiLan1.0
EHF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2936,854,924 - 36,885,618 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,859,731 - 36,890,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,607,242 - 34,638,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,472,187 - 34,514,264 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,472,200 - 34,514,264 (+)EnsemblpanPan2panpan1.1
EHF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,191,269 - 33,233,318 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,195,526 - 33,233,665 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1832,796,889 - 32,839,147 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01833,801,826 - 33,844,144 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,782,429 - 33,844,104 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11833,361,719 - 33,404,002 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01832,953,515 - 32,995,753 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01833,588,643 - 33,630,942 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ehf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,297,646 - 30,340,025 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365333,426,631 - 3,455,444 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365333,425,377 - 3,464,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl226,291,480 - 26,340,245 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1226,287,244 - 26,340,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2228,658,532 - 28,721,947 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EHF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1130,591,880 - 30,651,077 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl130,591,273 - 30,622,803 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038127,707,803 - 127,738,441 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476712,484,313 - 12,538,162 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476712,484,558 - 12,538,175 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ehf
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1581,099,340 - 81,137,600 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ehf
283 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:123
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000010580
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
D3Rat28  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83110,107,167 - 110,107,336 (+)Marker Load Pipeline
mRatBN7.2389,652,236 - 89,652,405 (+)MAPPERmRatBN7.2
Rnor_6.0393,188,656 - 93,188,824NCBIRnor6.0
Rnor_5.0399,831,524 - 99,831,692UniSTSRnor5.0
RGSC_v3.4388,529,305 - 88,529,473UniSTSRGSC3.4
RGSC_v3.4388,529,065 - 88,529,499RGDRGSC3.4
Celera388,721,437 - 88,721,605UniSTS
RGSC_v3.1388,425,733 - 88,425,901RGD
RH 3.4 Map3711.4UniSTS
RH 3.4 Map3711.4RGD
SHRSP x BN Map347.2698RGD
SHRSP x BN Map347.2698UniSTS
Cytogenetic Map3q32UniSTS
AF035527  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2389,642,978 - 89,643,082 (+)MAPPERmRatBN7.2
Rnor_6.0393,179,392 - 93,179,495NCBIRnor6.0
Rnor_5.0399,822,260 - 99,822,363UniSTSRnor5.0
RGSC_v3.4388,520,041 - 88,520,144UniSTSRGSC3.4
Celera388,712,176 - 88,712,279UniSTS
Cytogenetic Map3q32UniSTS
RH136410  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2389,642,012 - 89,642,208 (+)MAPPERmRatBN7.2
Rnor_6.0393,178,426 - 93,178,621NCBIRnor6.0
Rnor_5.0399,821,294 - 99,821,489UniSTSRnor5.0
RGSC_v3.4388,519,075 - 88,519,270UniSTSRGSC3.4
Celera388,711,210 - 88,711,405UniSTS
Cytogenetic Map3q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 38 101 89 88 57 32 57 6 262 100 8 80 81 90 31 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000010580   ⟹   ENSRNOP00000010580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3110,096,756 - 110,134,928 (-)Ensembl
mRatBN7.2 Ensembl389,641,833 - 89,679,997 (-)Ensembl
Rnor_6.0 Ensembl393,178,163 - 93,216,495 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117506   ⟹   ENSRNOP00000080197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3110,096,756 - 110,134,928 (-)Ensembl
mRatBN7.2 Ensembl389,641,833 - 89,679,997 (-)Ensembl
RefSeq Acc Id: NM_001106493   ⟹   NP_001099963
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83110,096,754 - 110,134,928 (-)NCBI
mRatBN7.2389,641,831 - 89,679,997 (-)NCBI
Rnor_6.0393,178,244 - 93,216,416 (-)NCBI
Rnor_5.0399,819,123 - 99,859,309 (-)NCBI
RGSC_v3.4388,518,893 - 88,557,065 (-)RGD
Celera388,711,028 - 88,749,198 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234641   ⟹   XP_006234703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83110,094,770 - 110,134,983 (-)NCBI
mRatBN7.2389,639,845 - 89,680,050 (-)NCBI
Rnor_6.0393,176,257 - 93,216,484 (-)NCBI
Rnor_5.0399,819,123 - 99,859,309 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104530   ⟹   XP_038960458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83110,094,770 - 110,112,630 (-)NCBI
mRatBN7.2389,639,845 - 89,657,703 (-)NCBI
RefSeq Acc Id: XR_005501811
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83110,098,291 - 110,134,989 (-)NCBI
mRatBN7.2389,643,442 - 89,680,059 (-)NCBI
RefSeq Acc Id: XR_005501812
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83110,098,291 - 110,134,991 (-)NCBI
mRatBN7.2389,643,438 - 89,680,061 (-)NCBI
RefSeq Acc Id: NP_001099963   ⟸   NM_001106493
- UniProtKB: B2RYD8 (UniProtKB/TrEMBL),   F7F464 (UniProtKB/TrEMBL),   A0A8I5ZQ62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234703   ⟸   XM_006234641
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000010580   ⟸   ENSRNOT00000010580
RefSeq Acc Id: XP_038960458   ⟸   XM_039104530
- Peptide Label: isoform X2
- UniProtKB: A6HNR1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080197   ⟸   ENSRNOT00000117506
Protein Domains
ETS   PNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYD8-F1-model_v2 AlphaFold B2RYD8 1-300 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692252
Promoter ID:EPDNEW_R2777
Type:multiple initiation site
Name:Ehf_1
Description:ets homologous factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0393,216,417 - 93,216,477EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310282 AgrOrtholog
BioCyc Gene G2FUF-48583 BioCyc
Ensembl Genes ENSRNOG00000007484 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010580 ENTREZGENE
  ENSRNOT00000010580.8 UniProtKB/TrEMBL
  ENSRNOT00000117506.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.10.150.50 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7937842 IMAGE-MGC_LOAD
InterPro EHF UniProtKB/TrEMBL
  Ets_dom UniProtKB/TrEMBL
  ETS_fam UniProtKB/TrEMBL
  SAM_PNT UniProtKB/TrEMBL
  SAM_type UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:295965 UniProtKB/TrEMBL
MGC_CLONE MGC:188471 IMAGE-MGC_LOAD
NCBI Gene 295965 ENTREZGENE
PANTHER PTHR11849 UniProtKB/TrEMBL
  PTHR11849:SF171 UniProtKB/TrEMBL
Pfam Ets UniProtKB/TrEMBL
  SAM_PNT UniProtKB/TrEMBL
PhenoGen Ehf PhenoGen
PRINTS ETSDOMAIN UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_3 UniProtKB/TrEMBL
  PNT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007484 RatGTEx
SMART ETS UniProtKB/TrEMBL
  SAM_PNT UniProtKB/TrEMBL
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A8I5ZQ62 ENTREZGENE, UniProtKB/TrEMBL
  A6HNR1 ENTREZGENE, UniProtKB/TrEMBL
  B2RYD8 ENTREZGENE, UniProtKB/TrEMBL
  F7F464 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ehf  ets homologous factor   Ehf_predicted  ets homologous factor (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ehf_predicted  ets homologous factor (predicted)      Symbol and Name status set to approved 70820 APPROVED