EHF (ETS homologous factor) - Rat Genome Database

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Gene: EHF (ETS homologous factor) Pan paniscus
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Symbol: EHF
Name: ETS homologous factor
RGD ID: 11901760
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN cell differentiation (inferred); epithelial cell differentiation (inferred); positive regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); intellectual disability (ortholog); Prostatic Neoplasms (ortholog); FOUND IN Golgi apparatus (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ETS domain-containing transcription factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2936,854,924 - 36,885,618 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,859,731 - 36,890,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,607,242 - 34,638,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,472,187 - 34,514,264 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,472,200 - 34,514,264 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:18689901   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EHF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2936,854,924 - 36,885,618 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,859,731 - 36,890,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,607,242 - 34,638,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,472,187 - 34,514,264 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,472,200 - 34,514,264 (+)Ensemblpanpan1.1panPan2
EHF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381134,621,093 - 34,663,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1134,621,093 - 34,663,288 (+)EnsemblGRCh38hg38GRCh38
GRCh371134,642,640 - 34,684,835 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361134,599,244 - 34,639,657 (+)NCBINCBI36Build 36hg18NCBI36
Build 341134,599,243 - 34,639,657NCBI
Celera1134,789,745 - 34,831,979 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1134,339,885 - 34,382,105 (+)NCBIHuRef
CHM1_11134,641,504 - 34,683,732 (+)NCBICHM1_1
T2T-CHM13v2.01134,757,923 - 34,800,105 (+)NCBIT2T-CHM13v2.0
Ehf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,093,776 - 103,133,620 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,093,778 - 103,133,623 (-)EnsemblGRCm39 Ensembl
GRCm382103,263,431 - 103,303,275 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2103,263,433 - 103,303,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv372103,103,590 - 103,143,353 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362103,064,272 - 103,104,035 (-)NCBIMGSCv36mm8
Celera2104,508,466 - 104,548,323 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.43NCBI
Ehf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,094,770 - 110,134,991 (-)NCBIGRCr8
mRatBN7.2389,639,845 - 89,680,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,641,833 - 89,679,997 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,141,749 - 93,179,881 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03101,740,795 - 101,778,927 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0399,571,273 - 99,609,472 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0393,176,257 - 93,216,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,178,163 - 93,216,495 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,819,123 - 99,859,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4388,518,893 - 88,557,065 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1388,415,387 - 88,433,900 (-)NCBI
Celera388,711,028 - 88,749,198 (-)NCBICelera
Cytogenetic Map3q32NCBI
Ehf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542211,598,884 - 11,641,396 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542211,599,245 - 11,640,828 (-)NCBIChiLan1.0ChiLan1.0
EHF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,191,269 - 33,233,318 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,195,526 - 33,233,665 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1832,796,889 - 32,839,147 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01833,801,826 - 33,844,144 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,782,429 - 33,844,104 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11833,361,719 - 33,404,002 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01832,953,515 - 32,995,753 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01833,588,643 - 33,630,942 (-)NCBIUU_Cfam_GSD_1.0
Ehf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,297,646 - 30,340,025 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365333,425,377 - 3,464,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl226,291,480 - 26,340,245 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1226,287,244 - 26,340,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2228,658,532 - 28,721,947 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EHF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1130,591,880 - 30,651,077 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl130,591,273 - 30,622,803 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038127,707,803 - 127,738,441 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476712,484,313 - 12,538,162 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476712,484,558 - 12,538,175 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000048385   ⟹   ENSPPAP00000025557
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,472,200 - 34,514,264 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000048390   ⟹   ENSPPAP00000025562
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,473,268 - 34,514,264 (+)Ensembl
RefSeq Acc Id: XM_003830377   ⟹   XP_003830425
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2936,854,924 - 36,885,618 (+)NCBI
NHGRI_mPanPan11136,859,731 - 36,890,420 (+)NCBI
Mhudiblu_PPA_v01134,607,242 - 34,638,019 (+)NCBI
PanPan1.11134,483,533 - 34,514,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055094272   ⟹   XP_054950247
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2936,854,924 - 36,885,618 (+)NCBI
NHGRI_mPanPan11136,859,731 - 36,890,420 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003830425 (Get FASTA)   NCBI Sequence Viewer  
  XP_054950247 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A1YG61 (Get FASTA)   NCBI Sequence Viewer  
  ABM54286 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000025557.1
  ENSPPAP00000025562.1
RefSeq Acc Id: XP_003830425   ⟸   XM_003830377
- Peptide Label: isoform X1
- UniProtKB: A1YG61 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSPPAP00000025557   ⟸   ENSPPAT00000048385
Ensembl Acc Id: ENSPPAP00000025562   ⟸   ENSPPAT00000048390
RefSeq Acc Id: XP_054950247   ⟸   XM_055094272
- Peptide Label: isoform X2
Protein Domains
ETS   PNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035904 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048385.1 UniProtKB/TrEMBL
  ENSPPAT00000048390.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EHF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ets_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pointed_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene EHF ENTREZGENE
PANTHER PTHR11849 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11849:SF171 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ets UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_PNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS ETSDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ETS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_PNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R9B7J1_PANPA UniProtKB/TrEMBL
  A1YG61 ENTREZGENE, UniProtKB/Swiss-Prot