Ift88 (intraflagellar transport 88)

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Gene: Ift88 (intraflagellar transport 88) Rattus norvegicus

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Symbol:

Ift88

Name:

intraflagellar transport 88

RGD ID:

1309717

Description:

Predicted to enable kinesin binding activity. Involved in response to silicon dioxide. Located in outer acrosomal membrane and trans-Golgi network. Biomarker of silicosis. Orthologous to human IFT88 (intraflagellar transport 88); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

intraflagellar transport 88 homolog; intraflagellar transport 88 homolog (Chlamydomonas); intraflagellar transport protein 88 homolog; LOC305918; tetratricopeptide repeat domain 10; Ttc10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IFT88 (intraflagellar transport 88)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ift88 (intraflagellar transport 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ift88 (intraflagellar transport 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IFT88 (intraflagellar transport 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IFT88 (intraflagellar transport 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ift88 (intraflagellar transport 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IFT88 (intraflagellar transport 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IFT88 (intraflagellar transport 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ift88 (intraflagellar transport 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	IFT88 (intraflagellar transport 88)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ift88 (intraflagellar transport 88)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ift88 (intraflagellar transport 88 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	nompB	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	osm-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	35,685,678 - 35,786,875 (+)	NCBI		GRCr8
mRatBN7.2	15	31,573,325 - 31,666,068 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	31,573,376 - 31,672,147 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	33,564,745 - 33,657,387 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	34,715,428 - 34,808,071 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	32,973,502 - 33,066,150 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	37,690,417 - 37,786,855 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	37,691,345 - 37,784,924 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	41,536,303 - 41,630,808 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	36,468,007 - 36,560,959 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	36,489,464 - 36,576,142 (+)	NCBI
Celera	15	31,284,577 - 31,376,920 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

asphyxiating thoracic dystrophy (ISO)

autosomal dominant nonsyndromic deafness 3B (ISO)

autosomal recessive nonsyndromic deafness 1A (ISO)

autosomal recessive nonsyndromic deafness 1B (ISO)

autosomal recessive polycystic kidney disease (ISO,ISS)

basal cell carcinoma (ISO)

cataract 14 multiple types (ISO)

Clouston syndrome (ISO)

cone-rod dystrophy (ISO)

ectodermal dysplasia (ISO)

gastrointestinal stromal tumor (ISO)

Huntington's disease (ISO)

Liver Neoplasms (ISO)

mitral valve disease (ISS)

polydactyly (ISO)

pre-malignant neoplasm (ISO)

scimitar syndrome (ISS)

silicosis (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4-hydroxyphenyl retinamide (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

calcium atom (ISO)

calcium(0) (ISO)

carbon nanotube (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

furan (EXP)

gadolinium atom (ISO)

genistein (EXP)

gentamycin (EXP)

hydrogen peroxide (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-ethyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

potassium chromate (ISO)

resveratrol (ISO)

sunitinib (ISO)

tamoxifen (ISO)

theophylline (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ morphogenesis (ISO)

anterior/posterior pattern specification (ISO)

brain development (ISO)

cardiac muscle cell differentiation (ISO)

cardiac septum morphogenesis (ISO)

cilium assembly (ISO)

cilium movement (ISO)

cochlea development (ISO)

cytoplasmic microtubule organization (ISO)

determination of left/right symmetry (ISO)

dorsal/ventral pattern formation (ISO)

embryonic digit morphogenesis (ISO)

endothelial cell morphogenesis (ISO)

epidermal stem cell homeostasis (ISO)

epidermis development (ISO)

eye development (ISO)

forebrain development (ISO)

forebrain morphogenesis (ISO)

heart development (ISO)

heart formation (ISO)

inner ear receptor cell stereocilium organization (IBA,ISO)

intraciliary transport (IBA)

keratinocyte proliferation (ISO)

kidney development (IBA,ISO)

limb development (ISO)

liver development (ISO)

lung development (ISO)

lung vasculature development (ISO)

negative regulation of epithelial cell proliferation (ISO)

negative regulation of keratinocyte proliferation (ISO)

nervous system development (ISO)

neural precursor cell proliferation (ISO)

non-motile cilium assembly (IBA,ISO)

Notch signaling pathway (ISO)

pancreas development (ISO)

positive regulation of cilium assembly (ISO)

positive regulation of insulin-like growth factor receptor signaling pathway (ISO)

primary palate development (ISO)

protein localization (ISO)

regulation of autophagosome assembly (ISO)

regulation of cilium assembly (ISO)

regulation of fat cell differentiation (ISO)

regulation of feeding behavior (ISO)

regulation of odontogenesis of dentin-containing tooth (ISO)

regulation of protein processing (ISO)

response to fluid shear stress (ISO)

response to silicon dioxide (IEP)

smoothened signaling pathway (ISO)

sperm axoneme assembly (ISO)

spermatid nucleus elongation (ISO)

spinal cord dorsal/ventral patterning (ISO)

telencephalon development (ISO)

Cellular Component

acrosomal membrane (ISO)

axonemal basal plate (ISO)

axoneme (ISO)

centriole (IBA,ISO)

centrosome (ISO)

ciliary basal body (IBA,ISO)

ciliary base (IBA,ISO)

ciliary tip (ISO)

cilium (ISO)

cytoplasm (ISO)

intraciliary transport particle B (ISO)

kinocilium (ISO)

manchette (ISO)

motile cilium (ISO)

non-motile cilium (IBA,ISO)

outer acrosomal membrane (IDA)

photoreceptor connecting cilium (ISO)

sperm flagellum (ISO)

sperm head-tail coupling apparatus (ISO)

trans-Golgi network (IDA)

Molecular Function

kinesin binding (IBA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	A novel function of Huntingtin in the cilium and retinal ciliopathy in Huntington's disease mice.	Karam A, etal., Neurobiol Dis. 2015 Aug;80:15-28. doi: 10.1016/j.nbd.2015.05.008. Epub 2015 May 16.
3.	GMAP210 and IFT88 are present in the spermatid golgi apparatus and participate in the development of the acrosome-acroplaxome complex, head-tail coupling apparatus and tail.	Kierszenbaum AL, etal., Dev Dyn. 2011 Mar;240(3):723-36. doi: 10.1002/dvdy.22563. Epub 2011 Feb 10.
4.	Silica Perturbs Primary Cilia and Causes Myofibroblast Differentiation during Silicosis by Reduction of the KIF3A-Repressor GLI3 Complex.	Li S, etal., Theranostics. 2020 Jan 1;10(4):1719-1732. doi: 10.7150/thno.37049. eCollection 2020.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9176412	PMID:10804177	PMID:11062270	PMID:11251073	PMID:11773599	PMID:11854326	PMID:12701101	PMID:12821668	PMID:15226261	PMID:15755804	PMID:15930098	PMID:16254602
PMID:16775004	PMID:18066062	PMID:18285569	PMID:18297065	PMID:18590716	PMID:19036983	PMID:19208653	PMID:19253336	PMID:19384852	PMID:19596798	PMID:19654211	PMID:20159594
PMID:20230748	PMID:20368623	PMID:21209331	PMID:21285373	PMID:21289087	PMID:21429982	PMID:21565611	PMID:21653639	PMID:21703454	PMID:21761479	PMID:21837759	PMID:22228099
PMID:22689656	PMID:23386061	PMID:23599282	PMID:23810713	PMID:23955340	PMID:24089209	PMID:24302887	PMID:24421332	PMID:24469809	PMID:24596149	PMID:24927541	PMID:25294941
PMID:25443296	PMID:25564561	PMID:27623382	PMID:27682589	PMID:27767179	PMID:28291836	PMID:28428259	PMID:28536011	PMID:28625565	PMID:29487109	PMID:29891944	PMID:31761534
PMID:36155344

Genomics

Comparative Map Data

Ift88
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	35,685,678 - 35,786,875 (+)	NCBI		GRCr8
mRatBN7.2	15	31,573,325 - 31,666,068 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	31,573,376 - 31,672,147 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	33,564,745 - 33,657,387 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	34,715,428 - 34,808,071 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	32,973,502 - 33,066,150 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	37,690,417 - 37,786,855 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	37,691,345 - 37,784,924 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	41,536,303 - 41,630,808 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	36,468,007 - 36,560,959 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	36,489,464 - 36,576,142 (+)	NCBI
Celera	15	31,284,577 - 31,376,920 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

IFT88
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	20,567,157 - 20,691,444 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	20,567,138 - 20,691,444 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	21,141,296 - 21,265,583 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	20,039,208 - 20,163,576 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	2,203,136 - 2,327,509 (+)	NCBI		Celera
Cytogenetic Map	13	q12.11	NCBI
HuRef	13	1,944,935 - 2,068,758 (+)	NCBI		HuRef
CHM1_1	13	21,109,386 - 21,233,717 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	19,760,320 - 19,884,580 (+)	NCBI		T2T-CHM13v2.0

Ift88
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	57,661,519 - 57,755,393 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	57,661,519 - 57,755,393 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	57,424,064 - 57,517,936 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	57,424,062 - 57,517,936 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	58,042,908 - 58,136,773 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	56,378,236 - 56,472,046 (+)	NCBI		MGSCv36	mm8
Celera	14	55,219,087 - 55,313,152 (+)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	30.1	NCBI

Ift88
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	1,338,904 - 1,455,122 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955497	1,338,959 - 1,454,788 (+)	NCBI	ChiLan1.0	ChiLan1.0

IFT88
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	20,196,253 - 20,320,900 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	11,308,391 - 11,433,407 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	1,893,102 - 2,017,771 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	20,205,881 - 20,331,204 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	20,206,471 - 20,331,204 (+)	Ensembl	panpan1.1		panPan2

IFT88
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	17,414,965 - 17,551,405 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	17,414,965 - 17,551,266 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	17,446,483 - 17,582,062 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	17,553,518 - 17,689,146 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	17,553,521 - 17,689,059 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	17,424,524 - 17,560,075 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	17,436,123 - 17,571,980 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	17,493,013 - 17,628,598 (-)	NCBI		UU_Cfam_GSD_1.0

Ift88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	119,493,700 - 119,621,206 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936720	1,041,211 - 1,168,748 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936720	1,041,216 - 1,168,725 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IFT88
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	943,469 - 1,025,613 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	943,444 - 1,025,617 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	303,752 - 344,218 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IFT88
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	435,649 - 546,661 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	436,207 - 546,583 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	44,044,574 - 44,161,084 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ift88
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	16,954,507 - 17,086,337 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	16,954,368 - 17,086,377 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ift88
32 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	286
Count of miRNA genes:	187
Interacting mature miRNAs:	213
Transcripts:	ENSRNOT00000012988
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	20248600	37896129	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	19856566	34924750	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat

Markers in Region

AW546000

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	11,961,168 - 11,961,308 (+)	MAPPER	mRatBN7.2
mRatBN7.2	15	31,592,096 - 31,592,236 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	37,710,935 - 37,711,074	NCBI	Rnor6.0
Rnor_6.0	7	15,129,849 - 15,129,988	NCBI	Rnor6.0
Rnor_5.0	15	41,556,792 - 41,556,931	UniSTS	Rnor5.0
Rnor_5.0	7	15,288,979 - 15,289,118	UniSTS	Rnor5.0
RGSC_v3.4	7	13,539,988 - 13,540,127	UniSTS	RGSC3.4
RGSC_v3.4	15	36,486,687 - 36,486,826	UniSTS	RGSC3.4
Celera	15	31,303,241 - 31,303,380	UniSTS
Celera	7	10,056,134 - 10,056,273	UniSTS
Cytogenetic Map	7	q11	UniSTS
Cytogenetic Map	15	p12	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005493725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012988 ⟹ ENSRNOP00000012988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	31,573,376 - 31,666,085 (+)	Ensembl
Rnor_6.0 Ensembl	15	37,691,394 - 37,784,924 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076608 ⟹ ENSRNOP00000068425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	31,573,376 - 31,666,067 (+)	Ensembl
Rnor_6.0 Ensembl	15	37,691,345 - 37,784,923 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076741 ⟹ ENSRNOP00000068104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	31,573,376 - 31,625,228 (+)	Ensembl
Rnor_6.0 Ensembl	15	37,691,374 - 37,708,779 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076839 ⟹ ENSRNOP00000067945

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	31,573,376 - 31,650,575 (+)	Ensembl
Rnor_6.0 Ensembl	15	37,714,808 - 37,745,732 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118046 ⟹ ENSRNOP00000078923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	31,573,376 - 31,672,147 (+)	Ensembl

RefSeq Acc Id:

NM_001107266 ⟹ NP_001100736

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,688,987 - 35,781,629 (+)	NCBI
mRatBN7.2	15	31,573,417 - 31,666,068 (+)	NCBI
Rnor_6.0	15	37,691,394 - 37,784,924 (+)	NCBI
Rnor_5.0	15	41,536,303 - 41,630,808 (+)	NCBI
RGSC_v3.4	15	36,468,007 - 36,560,959 (+)	RGD
Celera	15	31,284,577 - 31,376,920 (+)	RGD

Sequence:

show sequence

GCCTCAGGCGTCGCGTCTTCCCTCAGGCCCACTCGTGGTCAGGCCGCTCCCCCTCGGCGCGAGG
TACACATGATGGAAAATGTTCATCTGGCACCAGAAACAGATGAGGATGATCTTTACTCTGGTTT
CAATGACTACAATCCAGCCTACGATACTGAGGAGTTGGAGAATGACACGGGTTTTCAGCAAGCA
GTGAGAACCAGTCATGGCAGAAGACCTCCAGTAACTGCAAAGATACCAAGCACAGCTGTCAGCA
GACCCATAGCTACTGGATATGGGTCCAAGACATCCCTGACATCATCAATGGGAAGGCCGATGAC
AGGGACTATTCAGGATGGAGTTGCTCGACCGATGACGGCGGTGAGAGCAGCTGGCTTTTCCAAG
GCAGCTTTGCGAGGCTCTGCATTTGACCCCCTTGGTCAGTCTAGGGGCCCTGCTCCTCCTTTGG
AAGCCAAAAATGAAGACAGTCCAGAAGAAAAGATTAGACAGTTAGAGAAGAAAGTAAATGAGTT
GGTGGAAGAAAGCTGTATTGCCAACAGTTGTGGAGACTTAAAACTGGCCTTAGAGAAGGCAAAA
GATGCAGGAAGAAAAGAGAGAGTCCTGGTGAGACAACGAGAGCAAGTCACAAGTCCAGAAAATA
TCAACTTGGACCTAACCTACTCCGTTCTTTTCAACTTGGCAAGTCAGTATTCTGCTAATGAAAT
GTATGCAGAAGCACTAAACACATACCAAGTTATAGTGAAAAATAAGATGTTTAGCAATGCAGGA
AGACTGAAAGTGAATATGGGAAATATTTATTTAAAGCAGAGGAATTATTCCAAAGCTATTAAAT
TCTACCGAATGGCCTTAGATCAGATCCCAAGTGTCCATAAAGAAATGAGGATTAAAATAATGCA
GAACATCGGGATCACGTTTATAAAGACCGGTCAGTACTCAGACGCCATCAACTCATTCGAGCAC
ATCATGAGCATGGCCCCAAGCCTGAAGGCAGGCTTCAACCTCATTCTCAGCTGCTTCGCCATTG
GAGATCGAGAGAAAATGAAGAAGGCATTCCAAAAGTTAATTGCTGTTCCGTTGGAAATTGACGA
AGACGATAAATATATCTCCCCCAGTGATGATCCCCATACTAACTTATTGATTGAAGCTATAAAA
AATGACCATCTTAGGCAAATGGAACGTGAAAGGAAAGCCATGGCAGAAAAATACATCATGACAG
CTGCAAAACTCATTGCTCCTGTGATCGAAGCCTCCTTTGCTGTGGGTTATAACTGGTGTGTGGA
AGTAGTGAAGGCCTCTCAGTACGTGGAGCTGGCCAACGACCTGGAGATTAACAAAGCAATCACC
TACTTGAGACAGAAGGACTTCAACCAGGCTGTAGACACATTGAAAATGTTTGAGAAGAAGGACA
GTAGAGTGAAGAGTGCAGCTGCGACCAACCTCTCATTCCTGTATTATCTGGAGAACGAATTTGC
CCAAGCCAGCAGCTATGCAGATTTAGCTGTGAGCTCAGACAGATACAACCCATCAGCTCTCACT
AACAAGGGGAACACAGTGTTTGCAAATGGTGACTACGAGAAGGCAGCTGAGTTCTATAAAGAGG
CCCTAAGAAACGATTCTTCTTGTACTGAAGCACTTTATAACATTGGCCTCACCTACAAGAAGCT
CAACCGCCTGGACGAAGCGTTGGACTCCTTCCTGAAACTGCATGCAATCCTTCGGAACAGCGCT
CAAGTTCTGTGCCAGATAGCAAATGTATACGAGTTAATGGAAGATCCCAATCAGGCTATTGAGT
GGCTGATGCAGTTGATCAGCGTGGTTCCAACTGATTCCCAAGCGCTGTCTAAACTGGGAGAGTT
GTACGATAGTGAGGGAGACAAGTCCCAGGCGTTCCAATATTACTATGAGTCATATAGGTATTTC
CCTTCTAACATTGAAGTCATCGAATGGCTTGGAGCTTATTACATTGATACCCAGTTCTGCGAGA
AAGCCATTCAGTACTTTGAAAGAGCTTCCCTTATACAACCCACACAAGTGAAATGGCAGCTGAT
GGTAGCTAGCTGTTTTAGAAGAAGTGGTAACTACCAAAAGGCATTAGATACTTACAAAGAGATT
CACAGGAAATTTCCAGAGAATGTTGAATGTTTGCGTTTCTTGGTTCGTCTCTGCACAGATATTG
GATTAAAAGAAGTTCAAGAATATGCCACAAAACTCAAGAGGTTGGAAAAAATGAAAGAAATGCG
GGAACAGCGCATAAAATCAGGCAGAGACAGCGGCGGGGGCTCTCGCAGCAAACGAGAGGGGAGC
GCTGGCAGTGATAGTGGCCAGAACAGTAGTGCCAGTAGTAAAAGTGAACGACTGAGTGCCAAGC
TCAGAGCTTTGCCTGGGACAGACGAACCTTATGAAAGTAGCGGGAACAAAGAAATAGGCAAATG
CCTCCTATGTGGATCCACTGGGCCCTCAGATAGAAAGACCAAAAACTGCAGCCAGAAAGAGAAT
CGACGAGGACGATTTTGCTGATGAAGAGTTAGGAGATGACTTGCTCCCAGAATAATATAAACTC
TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTAT
GGAAGCCAGAAGCCAGCCTCAGGTGTTTCTCAGGCACCATCTATCATCTTTTTAAACTTGTGAC
AAGGTTCCTCTGGCCCGGAACTTGCCATATAAGCAAGACTGGCTGGCTAGCAACCCCACGGATC
CGCCCGTCTCTGCTTCCTTGCTGGGAGATTCATAAGCACATGGTACTAAATCCAGCTTTCTTCA
AACGGACTCTCGGGCTTGAGCTCAGGCCCTCCAGCTTGCAAGGCAAGCAATTTCCAATTGTGTT
CTCTCTGGCCAAAGAAGTCATTTACCAAAGGGAAGAAATTGCCTTATAAGGTAATGCTCATGGT
AAACCTGGGACCAATTGTCCAAACTTTAATTCTGTACACTGTTGAAACTTTAAATGAGTGTATT
TTGTTCTTGAGGATGGATTTGTGCTGTCAGTTTTAAGATGGAATAAACCTGTGAAACAAC

hide sequence

RefSeq Acc Id:

XM_006252066 ⟹ XP_006252128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,781,629 (+)	NCBI
mRatBN7.2	15	31,573,325 - 31,666,068 (+)	NCBI
Rnor_6.0	15	37,690,417 - 37,784,924 (+)	NCBI
Rnor_5.0	15	41,536,303 - 41,630,808 (+)	NCBI

Sequence:

show sequence

GAAAAGAAGATTAACTCTAGTATTTATCTTTCTGTATTGAAGCGCAGTAACTTGAAAGGTCCCT
ATGATGTCCACTAATTACCTTAACAACTATTTAGTGACTATCTGCTCTATGTGATGCACAGTAG
CCAAATACTGTCAATAACTGTAGGATATACCCCACTTGCAAGATAACACGTTAGCCTAACACTG
TTACTTTCTGAATGCTGATACAAAACATCTGAATCAGAGATAAGGGGGTTTAATCTTCAAAACA
CACCAATTAGCCCCAACCCGAGCAAGAACCCCGAGGGAAGCTAAGGTATCCACGCAATGGCTTT
CCGACACAACTCAACAATAAGGTTAGTAAACTTATAATGGGCTTCAAATCAACATGTCCAGCTT
TTGCTCCGGAGGGAAACATTATCTTGTCTTTAAGACAAGAGTTTTTCGTTTTTCTGGCCCTGCT
GGTCTTGTACCCCCCGAGCATTTAGTCTCCACCTTCTAAATGGTGGGATTACAGATGCGCTTTC
TGGCATCACATTTCCCTGATTTTTTAAAAATTTTTCAGGTTAAATTTATTTAAAGAGAACCCAG
ACAGGATAGTGTGACAAATTTATGGGGTGACGAGTACAATTCTACGCAATATCCCACAGAAAAC
AGCCTTCCAAGGTTCCAAGCCGCGTGGTGGCTCCGGGACACATTTCATTCGCTTAGCCATCACG
CTCTGGCCGTCCTCTCTGTAGATGGCTGCTTCGGGTTTCACTCGATCTTGATTTCCTTCTGTGA
TGACTCCTAGCACGTAGCGTCTCCTAGACCACCATAAATATCGAGCCAATCTCTGGACTCACTC
AGCTCTCTGCGGCCCGCGGGTCCCAGCAGCCCTGCACTTCCGGTCCCGAGCTTCCGGCCTCGCC
CACCCTGCGCGGAGGCCTGTGGGAGCGGCTTCCTTGGAGCCGCACCTGGCAACGGCTGGGCGTC
CAGCTCTGGCCTGCTGAGCCTCAGGCGTCGCGTCTTCCCTCAGGCCCACTCGTGGTCAGGCCGC
TCCCCCTCGGCGCGAGGTACACATGATGGAAAATGTTCATCTGGCACCAGAAACAGATGAGGAT
GATCTTTACTCTGGTTTCAATGACTACAATCCAGCCTACGATACTGAGGAGTTGGAGAATGACA
CGGGTTTTCAGCAAGCAGTGAGAACCAGTCATGGCAGAAGACCTCCAGTAACTGCAAAGATACC
AAGCACAGCTGTCAGCAGACCCATAGCTACTGGATATGGGTCCAAGACATCCCTGACATCATCA
ATGGGAAGGCCGATGACAGGGACTATTCAGGATGGAGTTGCTCGACCGATGACGGCGGTGAGAG
CAGCTGGCTTTTCCAAGGCAGCTTTGCGAGGCTCTGCATTTGACCCCCTTGGTCAGTCTAGGGG
CCCTGCTCCTCCTTTGGAAGCCAAAAATGAAGACAGTCCAGAAGAAAAGATTAGACAGTTAGAG
AAGAAAGTAAATGAGTTGGTGGAAGAAAGCTGTATTGCCAACAGTTGTGGAGACTTAAAACTGG
CCTTAGAGAAGGCAAAAGATGCAGGAAGAAAAGAGAGAGTCCTGGTGAGACAACGAGAGCAAGT
CACAAGTCCAGAAAATATCAACTTGGACCTAACCTACTCCGTTCTTTTCAACTTGGCAAGTCAG
TATTCTGCTAATGAAATGTATGCAGAAGCACTAAACACATACCAAGTTATAGTGAAAAATAAGA
TGTTTAGCAATGCAGGAAGACTGAAAGTGAATATGGGAAATATTTATTTAAAGCAGAGGAATTA
TTCCAAAGCTATTAAATTCTACCGAATGGCCTTAGATCAGATCCCAAGTGTCCATAAAGAAATG
AGGATTAAAATAATGCAGAACATCGGGATCACGTTTATAAAGACCGGTCAGTACTCAGACGCCA
TCAACTCATTCGAGCACATCATGAGCATGGCCCCAAGCCTGAAGGCAGGCTTCAACCTCATTCT
CAGCTGCTTCGCCATTGGAGATCGAGAGAAAATGAAGAAGGCATTCCAAAAGTTAATTGCTGTT
CCGTTGGAAATTGACGAAGACGATAAATATATCTCCCCCAGTGATGATCCCCATACTAACTTAT
TGATTGAAGCTATAAAAAATGACCATCTTAGGCAAATGGAACGTGAAAGGAAAGCCATGGCAGA
AAAATACATCATGACAGCTGCAAAACTCATTGCTCCTGTGATCGAAGCCTCCTTTGCTGTGGGT
TATAACTGGTGTGTGGAAGTAGTGAAGGCCTCTCAGTACGTGGAGCTGGCCAACGACCTGGAGA
TTAACAAAGCAATCACCTACTTGAGACAGAAGGACTTCAACCAGGCTGTAGACACATTGAAAAT
GTTTGAGAAGAAGGACAGTAGAGTGAAGAGTGCAGCTGCGACCAACCTCTCATTCCTGTATTAT
CTGGAGAACGAATTTGCCCAAGCCAGCAGCTATGCAGATTTAGCTGTGAGCTCAGACAGATACA
ACCCATCAGCTCTCACTAACAAGGGGAACACAGTGTTTGCAAATGGTGACTACGAGAAGGCAGC
TGAGTTCTATAAAGAGGCCCTAAGAAACGATTCTTCTTGTACTGAAGCACTTTATAACATTGGC
CTCACCTACAAGAAGCTCAACCGCCTGGACGAAGCGTTGGACTCCTTCCTGAAACTGCATGCAA
TCCTTCGGAACAGCGCTCAAGTTCTGTGCCAGATAGCAAATGTATACGAGTTAATGGAAGATCC
CAATCAGGCTATTGAGTGGCTGATGCAGTTGATCAGCGTGGTTCCAACTGATTCCCAAGCGCTG
TCTAAACTGGGAGAGTTGTACGATAGTGAGGGAGACAAGTCCCAGGCGTTCCAATATTACTATG
AGTCATATAGGTATTTCCCTTCTAACATTGAAGTCATCGAATGGCTTGGAGCTTATTACATTGA
TACCCAGTTCTGCGAGAAAGCCATTCAGTACTTTGAAAGAGCTTCCCTTATACAACCCACACAA
GTGAAATGGCAGCTGATGGTAGCTAGCTGTTTTAGAAGAAGTGGTAACTACCAAAAGGCATTAG
ATACTTACAAAGAGATTCACAGGAAATTTCCAGAGAATGTTGAATGTTTGCGTTTCTTGGTTCG
TCTCTGCACAGATATTGGATTAAAAGAAGTTCAAGAATATGCCACAAAACTCAAGAGGTTGGAA
AAAATGAAAGAAATGCGGGAACAGCGCATAAAATCAGGCAGAGACAGCGGCGGGGGCTCTCGCA
GCAAACGAGAGGGGAGCGCTGGCAGTGATAGTGGCCAGAACAGTAGTGCCAGTAGTAAAAGTGA
ACGACTGAGTGCCAAGCTCAGAGCTTTGCCTGGGACAGACGAACCTTATGAAAGTAGCGGGAAC
AAAGAAATAGATGCCTCCTATGTGGATCCACTGGGCCCTCAGATAGAAAGACCAAAAACTGCAG
CCAGAAAGAGAATCGACGAGGACGATTTTGCTGATGAAGAGTTAGGAGATGACTTGCTCCCAGA
ATAATATAAACTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTATTTATGGAAGCCAGAAGCCAGCCTCAGGTGTTTCTCAGGCACCATCTATCATCTTT
TTAAACTTGTGACAAGGTTCCTCTGGCCCGGAACTTGCCATATAAGCAAGACTGGCTGGCTAGC
AACCCCACGGATCCGCCCGTCTCTGCTTCCTTGCTGGGAGATTCATAAGCACATGGTACTAAAT
CCAGCTTTCTTCAAACGGACTCTCGGGCTTGAGCTCAGGCCCTCCAGCTTGCAAGGCAAGCAAT
TTCCAATTGTGTTCTCTCTGGCCAAAGAAGTCATTTACCAAAGGGAAGAAATTGCCTTATAAGG
TAATGCTCATGGTAAACCTGGGACCAATTGTCCAAACTTTAATTCTGTACACTGTTGAAACTTT
AAATGAGTGTATTTTGTTCTTGAGGATGGATTTGTGCTGTCAGTTTTAAGATGGAATAAACCTG
TGAAACAAC

hide sequence

RefSeq Acc Id:

XM_006252067 ⟹ XP_006252129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,781,629 (+)	NCBI
mRatBN7.2	15	31,573,349 - 31,666,068 (+)	NCBI
Rnor_6.0	15	37,690,417 - 37,784,924 (+)	NCBI
Rnor_5.0	15	41,536,303 - 41,630,808 (+)	NCBI

Sequence:

show sequence

GAAAAGAAGATTAACTCTAGTATTTATCTTTCTGTATTGAAGCGCAGTAACTTGAAAGGTCCCT
ATGATGTCCACTAATTACCTTAACAACTATTTAGTGACTATCTGCTCTATGTGATGCACAGTAG
CCAAATACTGTCAATAACTGTAGGATATACCCCACTTGCAAGATAACACGTTAGCCTAACACTG
TTACTTTCTGAATGCTGATACAAAACATCTGAATCAGAGATAAGGGGGTTTAATCTTCAAAACA
CACCAATTAGCCCCAACCCGAGCAAGAACCCCGAGGGAAGCTAAGGTATCCACGCAATGGCTTT
CCGACACAACTCAACAATAAGGTTAGTAAACTTATAATGGGCTTCAAATCAACATGTCCAGCTT
TTGCTCCGGAGGGAAACATTATCTTGTCTTTAAGACAAGAGTTTTTCGTTTTTCTGGCCCTGCT
GGTCTTGTACCCCCCGAGCATTTAGTCTCCACCTTCTAAATGGTGGGATTACAGATGCGCTTTC
TGGCATCACATTTCCCTGATTTTTTAAAAATTTTTCAGGTTAAATTTATTTAAAGAGAACCCAG
ACAGGATAGTGTGACAAATTTATGGGGTGACGAGTACAATTCTACGCAATATCCCACAGAAAAC
AGCCTTCCAAGGTTCCAAGCCGCGTGGTGGCTCCGGGACACATTTCATTCGCTTAGCCATCACG
CTCTGGCCGTCCTCTCTGTAGATGGCTGCTTCGGGTTTCACTCGATCTTGATTTCCTTCTGTGA
TGACTCCTAGCACGTAGCGTCTCCTAGACCACCATAAATATCGAGCCAATCTCTGGACTCACTC
AGCTCTCTGCGGCCCGCGGGTCCCAGCAGCCCTGCACTTCCGGTCCCGAGCTTCCGGCCTCGCC
CACCCTGCGCGGAGGCCTGTGGGAGCGGCTTCCTTGGAGCCGCACCTGGCAACGGCTGGGCGTC
CAGCTCTGGCCTGCTGAGCCTCAGGCGTCGCGTCTTCCCTCAGGCCCACTCGTGGTCAGGCCGC
TCCCCCTCGGCGCGAGGGGCTGTGCTGTGGAGTTACACCGGGGCTGAGCTCTCCTTTTATGCCA
GCATGACCCGAATCGAACACTTGTCATCATTCATAAGATTCTCTCACGCTCCTATTCTTTCACT
CCACTACTCAGCCCCAGGAAGCCGCCATTGTCCTGTTTTCTAGTACAGCTTGGTTTTGCCTCTT
CTGCAACTTCACAGAGGTACACATGATGGAAAATGTTCATCTGGCACCAGAAACAGATGAGGAT
GATCTTTACTCTGGTTTCAATGACTACAATCCAGCCTACGATACTGAGGAGTTGGAGAATGACA
CGGGTTTTCAGCAAGCAGTGAGAACCAGTCATGGCAGAAGACCTCCAGTAACTGCAAAGATACC
AAGCACAGCTGTCAGCAGACCCATAGCTACTGGATATGGGTCCAAGACATCCCTGACATCATCA
ATGGGAAGGCCGATGACAGGGACTATTCAGGATGGAGTTGCTCGACCGATGACGGCGGTGAGAG
CAGCTGGCTTTTCCAAGGCAGCTTTGCGAGGCTCTGCATTTGACCCCCTTGGTCAGTCTAGGGG
CCCTGCTCCTCCTTTGGAAGCCAAAAATGAAGACAGTCCAGAAGAAAAGATTAGACAGTTAGAG
AAGAAAGTAAATGAGTTGGTGGAAGAAAGCTGTATTGCCAACAGTTGTGGAGACTTAAAACTGG
CCTTAGAGAAGGCAAAAGATGCAGGAAGAAAAGAGAGAGTCCTGGTGAGACAACGAGAGCAAGT
CACAAGTCCAGAAAATATCAACTTGGACCTAACCTACTCCGTTCTTTTCAACTTGGCAAGTCAG
TATTCTGCTAATGAAATGTATGCAGAAGCACTAAACACATACCAAGTTATAGTGAAAAATAAGA
TGTTTAGCAATGCAGGAAGACTGAAAGTGAATATGGGAAATATTTATTTAAAGCAGAGGAATTA
TTCCAAAGCTATTAAATTCTACCGAATGGCCTTAGATCAGATCCCAAGTGTCCATAAAGAAATG
AGGATTAAAATAATGCAGAACATCGGGATCACGTTTATAAAGACCGGTCAGTACTCAGACGCCA
TCAACTCATTCGAGCACATCATGAGCATGGCCCCAAGCCTGAAGGCAGGCTTCAACCTCATTCT
CAGCTGCTTCGCCATTGGAGATCGAGAGAAAATGAAGAAGGCATTCCAAAAGTTAATTGCTGTT
CCGTTGGAAATTGACGAAGACGATAAATATATCTCCCCCAGTGATGATCCCCATACTAACTTAT
TGATTGAAGCTATAAAAAATGACCATCTTAGGCAAATGGAACGTGAAAGGAAAGCCATGGCAGA
AAAATACATCATGACAGCTGCAAAACTCATTGCTCCTGTGATCGAAGCCTCCTTTGCTGTGGGT
TATAACTGGTGTGTGGAAGTAGTGAAGGCCTCTCAGTACGTGGAGCTGGCCAACGACCTGGAGA
TTAACAAAGCAATCACCTACTTGAGACAGAAGGACTTCAACCAGGCTGTAGACACATTGAAAAT
GTTTGAGAAGAAGGACAGTAGAGTGAAGAGTGCAGCTGCGACCAACCTCTCATTCCTGTATTAT
CTGGAGAACGAATTTGCCCAAGCCAGCAGCTATGCAGATTTAGCTGTGAGCTCAGACAGATACA
ACCCATCAGCTCTCACTAACAAGGGGAACACAGTGTTTGCAAATGGTGACTACGAGAAGGCAGC
TGAGTTCTATAAAGAGGCCCTAAGAAACGATTCTTCTTGTACTGAAGCACTTTATAACATTGGC
CTCACCTACAAGAAGCTCAACCGCCTGGACGAAGCGTTGGACTCCTTCCTGAAACTGCATGCAA
TCCTTCGGAACAGCGCTCAAGTTCTGTGCCAGATAGCAAATGTATACGAGTTAATGGAAGATCC
CAATCAGGCTATTGAGTGGCTGATGCAGTTGATCAGCGTGGTTCCAACTGATTCCCAAGCGCTG
TCTAAACTGGGAGAGTTGTACGATAGTGAGGGAGACAAGTCCCAGGCGTTCCAATATTACTATG
AGTCATATAGGTATTTCCCTTCTAACATTGAAGTCATCGAATGGCTTGGAGCTTATTACATTGA
TACCCAGTTCTGCGAGAAAGCCATTCAGTACTTTGAAAGAGCTTCCCTTATACAACCCACACAA
GTGAAATGGCAGCTGATGGTAGCTAGCTGTTTTAGAAGAAGTGGTAACTACCAAAAGGCATTAG
ATACTTACAAAGAGATTCACAGGAAATTTCCAGAGAATGTTGAATGTTTGCGTTTCTTGGTTCG
TCTCTGCACAGATATTGGATTAAAAGAAGTTCAAGAATATGCCACAAAACTCAAGAGGTTGGAA
AAAATGAAAGAAATGCGGGAACAGCGCATAAAATCAGGCAGAGACAGCGGCGGGGGCTCTCGCA
GCAAACGAGAGGGGAGCGCTGGCAGTGATAGTGGCCAGAACAGTAGTGCCAGTAGTAAAAGTGA
ACGACTGAGTGCCAAGCTCAGAGCTTTGCCTGGGACAGACGAACCTTATGAAAGTAGCGGGAAC
AAAGAAATAGATGCCTCCTATGTGGATCCACTGGGCCCTCAGATAGAAAGACCAAAAACTGCAG
CCAGAAAGAGAATCGACGAGGACGATTTTGCTGATGAAGAGTTAGGAGATGACTTGCTCCCAGA
ATAATATAAACTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTATTTATGGAAGCCAGAAGCCAGCCTCAGGTGTTTCTCAGGCACCATCTATCATCTTT
TTAAACTTGTGACAAGGTTCCTCTGGCCCGGAACTTGCCATATAAGCAAGACTGGCTGGCTAGC
AACCCCACGGATCCGCCCGTCTCTGCTTCCTTGCTGGGAGATTCATAAGCACATGGTACTAAAT
CCAGCTTTCTTCAAACGGACTCTCGGGCTTGAGCTCAGGCCCTCCAGCTTGCAAGGCAAGCAAT
TTCCAATTGTGTTCTCTCTGGCCAAAGAAGTCATTTACCAAAGGGAAGAAATTGCCTTATAAGG
TAATGCTCATGGTAAACCTGGGACCAATTGTCCAAACTTTAATTCTGTACACTGTTGAAACTTT
AAATGAGTGTATTTTGTTCTTGAGGATGGATTTGTGCTGTCAGTTTTAAGATGGAATAAACCTG
TGAAACAAC

hide sequence

RefSeq Acc Id:

XM_006252070 ⟹ XP_006252132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,781,629 (+)	NCBI
mRatBN7.2	15	31,573,382 - 31,666,068 (+)	NCBI
Rnor_6.0	15	37,690,417 - 37,784,924 (+)	NCBI
Rnor_5.0	15	41,536,303 - 41,630,808 (+)	NCBI

Sequence:

show sequence

GAAAAGAAGATTAACTCTAGTATTTATCTTTCTGTATTGAAGCGCAGTAACTTGAAAGGTCCCT
ATGATGTCCACTAATTACCTTAACAACTATTTAGTGACTATCTGCTCTATGTGATGCACAGTAG
CCAAATACTGTCAATAACTGTAGGATATACCCCACTTGCAAGATAACACGTTAGCCTAACACTG
TTACTTTCTGAATGCTGATACAAAACATCTGAATCAGAGATAAGGGGGTTTAATCTTCAAAACA
CACCAATTAGCCCCAACCCGAGCAAGAACCCCGAGGGAAGCTAAGGTATCCACGCAATGGCTTT
CCGACACAACTCAACAATAAGGTTAGTAAACTTATAATGGGCTTCAAATCAACATGTCCAGCTT
TTGCTCCGGAGGGAAACATTATCTTGTCTTTAAGACAAGAGTTTTTCGTTTTTCTGGCCCTGCT
GGTCTTGTACCCCCCGAGCATTTAGTCTCCACCTTCTAAATGGTGGGATTACAGATGCGCTTTC
TGGCATCACATTTCCCTGATTTTTTAAAAATTTTTCAGGTTAAATTTATTTAAAGAGAACCCAG
ACAGGATAGTGTGACAAATTTATGGGGTGACGAGTACAATTCTACGCAATATCCCACAGAAAAC
AGCCTTCCAAGGTTCCAAGCCGCGTGGTGGCTCCGGGACACATTTCATTCGCTTAGCCATCACG
CTCTGGCCGTCCTCTCTGTAGATGGCTGCTTCGGGTTTCACTCGATCTTGATTTCCTTCTGTGA
TGACTCCTAGCACGTAGCGTCTCCTAGACCACCATAAATATCGAGCCAATCTCTGGACTCACTC
AGCTCTCTGCGGCCCGCGGGTCCCAGCAGCCCTGCACTTCCGGTCCCGAGCTTCCGGCCTCGCC
CACCCTGCGCGGAGGCCTGTGGGAGCGGCTTCCTTGGAGCCGCACCTGGCAACGGCTGGGCGTC
CAGCTCTGGCCTGCTGAGCCTCAGGCGTCGCGTCTTCCCTCAGGCCCACTCGTGGTCAGGCCGC
TCCCCCTCGGCGCGAGGTACACATGATGGAAAATGTTCATCTGGCACCAGAAACAGATGAGGAT
GATCTTTACTCTGGTTTCAATGACTACAATCCAGCCTACGATACTGAGGAGTTGGAGAATGACA
CGGGTTTTCAGCAAGCAGTGAGAACCAGTCATGGCAGAAGACCTCCAGTAACTGCAAAGATACC
AAGCACAGCTGTCAGCAGACCCATAGCTACTGGATATGGGTCCAAGACATCCCTGACATCATCA
ATGGGAAGGCCGATGACAGGGACTATTCAGGATGGAGTTGCTCGACCGATGACGGCGGTGAGAG
CAGCTGGCTTTTCCAAGGCAGCTTTGCGAGGCTCTGCATTTGACCCCCTTGGTCAGTCTAGGGG
CCCTGCTCCTCCTTTGGAAGCCAAAAATGAAGACAGTCCAGAAGAAAAGATTAGACAGTTAGAG
AAGAAAGTAAATGAGTTGGTGGAAGAAAGCTGTATTGCCAACAGTTGTGGAGACTTAAAACTGG
CCTTAGAGAAGGCAAAAGATGCAGGAAGAAAAGAGAGAGTCCTGGTGAGACAACGAGAGCAAGT
CACAAGTCCAGAAAATATCAACTTGGACCTAACCTACTCCGTTCTTTTCAACTTGGCAAGTCAG
TATTCTGCTAATGAAATGTATGCAGAAGCACTAAACACATACCAAGTTATAGTGAAAAATAAGA
TGTTTAGCAATGCAGGAAGACTGAAAGTGAATATGGGAAATATTTATTTAAAGCAGAGGAATTA
TTCCAAAGCTATTAAATTCTACCGAATGGCCTTAGATCAGATCCCAAGTGTCCATAAAGAAATG
AGGATTAAAATAATGCAGAACATCGGGATCACGTTTATAAAGACCGGTCAGTACTCAGACGCCA
TCAACTCATTCGAGCACATCATGAGCATGGCCCCAAGCCTGAAGGCAGGCTTCAACCTCATTCT
CAGCTGCTTCGCCATTGGAGATCGAGAGAAAATGAAGAAGGCATTCCAAAAGTTAATTGCTGTT
CCGTTGGAAATTGACGAAGACGATAAATATATCTCCCCCAGTGATGATCCCCATACTAACTTAT
TGATTGAAGCTATAAAAAATGACCATCTTAGGCAAATGGAACGTGAAAGGAAAGCCATGGCAGA
AAAATACATCATGACAGCTGCAAAACTCATTGCTCCTGTGATCGAAGCCTCCTTTGCTGTGGGT
TATAACTGGTGTGTGGAAGTAGTGAAGGCCTCTCAGTACGTGGAGCTGGCCAACGACCTGGAGA
TTAACAAAGCAATCACCTACTTGAGACAGAAGGACTTCAACCAGGCTGTAGACACATTGAAAAT
GTTTGAGAAGAAGGACAGTAGAGTGAAGAGTGCAGCTGCGACCAACCTCTCATTCCTGTATTAT
CTGGAGAACGAATTTGCCCAAGCCAGCAGCTATGCAGATTTAGCTGTGAGCTCAGACAGATACA
ACCCATCAGCTCTCACTAACAAGGGGAACACAGTGTTTGCAAATGGTGACTACGAGAAGGCAGC
TGAGTTCTATAAAGAGGCCCTAAGAAACGATTCTTCTTGTACTGAAGCACTTTATAACATTGGC
CTCACCTACAAGAAGCTCAACCGCCTGGACGAAGCGTTGGACTCCTTCCTGAAACTGCATGCAA
TCCTTCGGAACAGCGCTCAAGTTCTGTGCCAGATAGCAAATGTATACGAGTTAATGGAAGATCC
CAATCAGGCTATTGAGTGGCTGATGCAGTTGATCAGCGTGGTTCCAACTGATTCCCAAGCGCTG
TCTAAACTGGGAGAGTTGTACGATAGTGAGGGAGACAAGTCCCAGGCGTTCCAATATTACTATG
AGTCATATAGGTATTTCCCTTCTAACATTGAAGTCATCGAATGGCTTGGAGCTTATTACATTGA
TACCCAGTTCTGCGAGAAAGCCATTCAGTACTTTGAAAGAGCTTCCCTTATACAACCCACACAA
GTGAAATGGCAGCTGATGGTAGCTAGCTGTTTTAGAAGAAGTGGTAACTACCAAAAGGCATTAG
ATACTTACAAAGAGATTCACAGGAAATTTCCAGAGAATGTTGAATGTTTGCGTTTCTTGGTTCG
TCTCTGCACAGATATTGGATTAAAAGAAGTTCAAGAATATGCCACAAAACTCAAGAGGTTGGAA
AAAATGAAAGAAATGCGGGAACAGCGCATAAAATCAGGCAGAGACAGCGGCGGGGGCTCTCGCA
GCAAACGAGAGGGGAGCGCTGGCAGTGATGCCTCCTATGTGGATCCACTGGGCCCTCAGATAGA
AAGACCAAAAACTGCAGCCAGAAAGAGAATCGACGAGGACGATTTTGCTGATGAAGAGTTAGGA
GATGACTTGCTCCCAGAATAATATAAACTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTATTTATGGAAGCCAGAAGCCAGCCTCAGGTGTTTCTCAGG
CACCATCTATCATCTTTTTAAACTTGTGACAAGGTTCCTCTGGCCCGGAACTTGCCATATAAGC
AAGACTGGCTGGCTAGCAACCCCACGGATCCGCCCGTCTCTGCTTCCTTGCTGGGAGATTCATA
AGCACATGGTACTAAATCCAGCTTTCTTCAAACGGACTCTCGGGCTTGAGCTCAGGCCCTCCAG
CTTGCAAGGCAAGCAATTTCCAATTGTGTTCTCTCTGGCCAAAGAAGTCATTTACCAAAGGGAA
GAAATTGCCTTATAAGGTAATGCTCATGGTAAACCTGGGACCAATTGTCCAAACTTTAATTCTG
TACACTGTTGAAACTTTAAATGAGTGTATTTTGTTCTTGAGGATGGATTTGTGCTGTCAGTTTT
AAGATGGAATAAACCTGTGAAACAAC

hide sequence

RefSeq Acc Id:

XM_017599687 ⟹ XP_017455176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,781,629 (+)	NCBI
mRatBN7.2	15	31,573,356 - 31,666,068 (+)	NCBI
Rnor_6.0	15	37,691,471 - 37,784,924 (+)	NCBI

Sequence:

show sequence

CGGCCCCTCGCGGCCACCCTCCCTGCTGCCCTCTACCTGCCTGGTACACATGATGGAAAATGTT
CATCTGGCACCAGAAACAGATGAGGATGATCTTTACTCTGGTTTCAATGACTACAATCCAGCCT
ACGATACTGAGGAGTTGGAGAATGACACGGGTTTTCAGCAAGCAGTGAGAACCAGTCATGGCAG
AAGACCTCCAGTAACTGCAAAGATACCAAGCACAGCTGTCAGCAGACCCATAGCTACTGGATAT
GGGTCCAAGACATCCCTGACATCATCAATGGGAAGGCCGATGACAGGGACTATTCAGGATGGAG
TTGCTCGACCGATGACGGCGGTGAGAGCAGCTGGCTTTTCCAAGGCAGCTTTGCGAGGCTCTGC
ATTTGACCCCCTTGGTCAGTCTAGGGGCCCTGCTCCTCCTTTGGAAGCCAAAAATGAAGACAGT
CCAGAAGAAAAGATTAGACAGTTAGAGAAGAAAGTAAATGAGTTGGTGGAAGAAAGCTGTATTG
CCAACAGTTGTGGAGACTTAAAACTGGCCTTAGAGAAGGCAAAAGATGCAGGAAGAAAAGAGAG
AGTCCTGGTGAGACAACGAGAGCAAGTCACAAGTCCAGAAAATATCAACTTGGACCTAACCTAC
TCCGTTCTTTTCAACTTGGCAAGTCAGTATTCTGCTAATGAAATGTATGCAGAAGCACTAAACA
CATACCAAGTTATAGTGAAAAATAAGATGTTTAGCAATGCAGGAAGACTGAAAGTGAATATGGG
AAATATTTATTTAAAGCAGAGGAATTATTCCAAAGCTATTAAATTCTACCGAATGGCCTTAGAT
CAGATCCCAAGTGTCCATAAAGAAATGAGGATTAAAATAATGCAGAACATCGGGATCACGTTTA
TAAAGACCGGTCAGTACTCAGACGCCATCAACTCATTCGAGCACATCATGAGCATGGCCCCAAG
CCTGAAGGCAGGCTTCAACCTCATTCTCAGCTGCTTCGCCATTGGAGATCGAGAGAAAATGAAG
AAGGCATTCCAAAAGTTAATTGCTGTTCCGTTGGAAATTGACGAAGACGATAAATATATCTCCC
CCAGTGATGATCCCCATACTAACTTATTGATTGAAGCTATAAAAAATGACCATCTTAGGCAAAT
GGAACGTGAAAGGAAAGCCATGGCAGAAAAATACATCATGACAGCTGCAAAACTCATTGCTCCT
GTGATCGAAGCCTCCTTTGCTGTGGGTTATAACTGGTGTGTGGAAGTAGTGAAGGCCTCTCAGT
ACGTGGAGCTGGCCAACGACCTGGAGATTAACAAAGCAATCACCTACTTGAGACAGAAGGACTT
CAACCAGGCTGTAGACACATTGAAAATGTTTGAGAAGAAGGACAGTAGAGTGAAGAGTGCAGCT
GCGACCAACCTCTCATTCCTGTATTATCTGGAGAACGAATTTGCCCAAGCCAGCAGCTATGCAG
ATTTAGCTGTGAGCTCAGACAGATACAACCCATCAGCTCTCACTAACAAGGGGAACACAGTGTT
TGCAAATGGTGACTACGAGAAGGCAGCTGAGTTCTATAAAGAGGCCCTAAGAAACGATTCTTCT
TGTACTGAAGCACTTTATAACATTGGCCTCACCTACAAGAAGCTCAACCGCCTGGACGAAGCGT
TGGACTCCTTCCTGAAACTGCATGCAATCCTTCGGAACAGCGCTCAAGTTCTGTGCCAGATAGC
AAATGTATACGAGTTAATGGAAGATCCCAATCAGGCTATTGAGTGGCTGATGCAGTTGATCAGC
GTGGTTCCAACTGATTCCCAAGCGCTGTCTAAACTGGGAGAGTTGTACGATAGTGAGGGAGACA
AGTCCCAGGCGTTCCAATATTACTATGAGTCATATAGGTATTTCCCTTCTAACATTGAAGTCAT
CGAATGGCTTGGAGCTTATTACATTGATACCCAGTTCTGCGAGAAAGCCATTCAGTACTTTGAA
AGAGCTTCCCTTATACAACCCACACAAGTGAAATGGCAGCTGATGGTAGCTAGCTGTTTTAGAA
GAAGTGGTAACTACCAAAAGGCATTAGATACTTACAAAGAGATTCACAGGAAATTTCCAGAGAA
TGTTGAATGTTTGCGTTTCTTGGTTCGTCTCTGCACAGATATTGGATTAAAAGAAGTTCAAGAA
TATGCCACAAAACTCAAGAGGTTGGAAAAAATGAAAGAAATGCGGGAACAGCGCATAAAATCAG
GCAGAGACAGCGGCGGGGGCTCTCGCAGCAAACGAGAGGGGAGCGCTGGCAGTGATAGTGGCCA
GAACAGTAGTGCCAGTAGTAAAAGTGAACGACTGAGTGCCAAGCTCAGAGCTTTGCCTGGGACA
GACGAACCTTATGAAAGTAGCGGGAACAAAGAAATAGATGCCTCCTATGTGGATCCACTGGGCC
CTCAGATAGAAAGACCAAAAACTGCAGCCAGAAAGAGAATCGACGAGGACGATTTTGCTGATGA
AGAGTTAGGAGATGACTTGCTCCCAGAATAATATAAACTCTTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATGGAAGCCAGAAGCCAGCCTCAGGT
GTTTCTCAGGCACCATCTATCATCTTTTTAAACTTGTGACAAGGTTCCTCTGGCCCGGAACTTG
CCATATAAGCAAGACTGGCTGGCTAGCAACCCCACGGATCCGCCCGTCTCTGCTTCCTTGCTGG
GAGATTCATAAGCACATGGTACTAAATCCAGCTTTCTTCAAACGGACTCTCGGGCTTGAGCTCA
GGCCCTCCAGCTTGCAAGGCAAGCAATTTCCAATTGTGTTCTCTCTGGCCAAAGAAGTCATTTA
CCAAAGGGAAGAAATTGCCTTATAAGGTAATGCTCATGGTAAACCTGGGACCAATTGTCCAAAC
TTTAATTCTGTACACTGTTGAAACTTTAAATGAGTGTATTTTGTTCTTGAGGATGGATTTGTGC
TGTCAGTTTTAAGATGGAATAAACCTGTGAAACAAC

hide sequence

RefSeq Acc Id:

XM_039093318 ⟹ XP_038949246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,699,510 - 35,781,629 (+)	NCBI
mRatBN7.2	15	31,579,209 - 31,666,068 (+)	NCBI

RefSeq Acc Id:

XM_039093319 ⟹ XP_038949247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,706,866 - 35,781,629 (+)	NCBI
mRatBN7.2	15	31,591,744 - 31,666,068 (+)	NCBI

RefSeq Acc Id:

XM_063274267 ⟹ XP_063130337

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,751,224 (+)	NCBI

RefSeq Acc Id:

XR_005493725

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,780,711 (+)	NCBI
mRatBN7.2	15	31,573,382 - 31,665,147 (+)	NCBI

RefSeq Acc Id:

XR_010057816

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,786,875 (+)	NCBI

RefSeq Acc Id:

XR_010057817

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,759,730 (+)	NCBI

RefSeq Acc Id:

XR_010057818

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	35,685,678 - 35,786,875 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100736	(Get FASTA)	NCBI Sequence Viewer
	XP_006252128	(Get FASTA)	NCBI Sequence Viewer
	XP_006252129	(Get FASTA)	NCBI Sequence Viewer
	XP_006252132	(Get FASTA)	NCBI Sequence Viewer
	XP_017455176	(Get FASTA)	NCBI Sequence Viewer
	XP_038949246	(Get FASTA)	NCBI Sequence Viewer
	XP_038949247	(Get FASTA)	NCBI Sequence Viewer
	XP_063130337	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM14349	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012988.5
	ENSRNOP00000067945.2
	ENSRNOP00000068104.2
	ENSRNOP00000068425.2
	ENSRNOP00000078923.1

RefSeq Acc Id:

NP_001100736 ⟸ NM_001107266

- UniProtKB:

A6KHC0 (UniProtKB/TrEMBL), A0A096MJ06 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRP
IATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEA
KNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENIN
LDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFY
RMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGD
REKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAA
KLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSR
VKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEAL
RNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWL
MQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKA
IQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGL
KEVQEYATKLKRLEKMKEMREQRIKSGRDSGGGSRSKREGSAGSDSGQNSSASSKSERLSAKLR
ALPGTDEPYESSGNKEIGKCLLCGSTGPSDRKTKNCSQKENRRGRFC

hide sequence

RefSeq Acc Id:	XP_006252129 ⟸ XM_006252067
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZPQ6 (UniProtKB/TrEMBL), A0A096MJ06 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRP IATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEA KNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENIN LDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFY RMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGD REKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAA KLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSR VKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEAL RNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWL MQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKA IQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGL KEVQEYATKLKRLEKMKEMREQRIKSGRDSGGGSRSKREGSAGSDSGQNSSASSKSERLSAKLR ALPGTDEPYESSGNKEIDASYVDPLGPQIERPKTAARKRIDEDDFADEELGDDLLPE hide sequence

RefSeq Acc Id:	XP_006252128 ⟸ XM_006252066
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZPQ6 (UniProtKB/TrEMBL), A0A096MJ06 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRP IATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEA KNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENIN LDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFY RMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGD REKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAA KLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSR VKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEAL RNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWL MQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKA IQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGL KEVQEYATKLKRLEKMKEMREQRIKSGRDSGGGSRSKREGSAGSDSGQNSSASSKSERLSAKLR ALPGTDEPYESSGNKEIDASYVDPLGPQIERPKTAARKRIDEDDFADEELGDDLLPE hide sequence

RefSeq Acc Id:	XP_006252132 ⟸ XM_006252070
- Peptide Label:	isoform X2
- UniProtKB:	D4ACI9 (UniProtKB/TrEMBL), A0A096MJ06 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRP IATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEA KNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENIN LDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFY RMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGD REKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAA KLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSR VKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEAL RNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWL MQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKA IQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGL KEVQEYATKLKRLEKMKEMREQRIKSGRDSGGGSRSKREGSAGSDASYVDPLGPQIERPKTAAR KRIDEDDFADEELGDDLLPE hide sequence

RefSeq Acc Id:	XP_017455176 ⟸ XM_017599687
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZPQ6 (UniProtKB/TrEMBL), A0A096MJ06 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRP IATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEA KNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENIN LDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFY RMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGD REKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAA KLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSR VKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEAL RNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWL MQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKA IQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGL KEVQEYATKLKRLEKMKEMREQRIKSGRDSGGGSRSKREGSAGSDSGQNSSASSKSERLSAKLR ALPGTDEPYESSGNKEIDASYVDPLGPQIERPKTAARKRIDEDDFADEELGDDLLPE hide sequence

Ensembl Acc Id:

ENSRNOP00000012988 ⟸ ENSRNOT00000012988

Ensembl Acc Id:

ENSRNOP00000067945 ⟸ ENSRNOT00000076839

Ensembl Acc Id:

ENSRNOP00000068425 ⟸ ENSRNOT00000076608

Ensembl Acc Id:

ENSRNOP00000068104 ⟸ ENSRNOT00000076741

RefSeq Acc Id:	XP_038949246 ⟸ XM_039093318
- Peptide Label:	isoform X3
- UniProtKB:	A0A096MJ06 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949247 ⟸ XM_039093319
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000078923 ⟸ ENSRNOT00000118046

RefSeq Acc Id:	XP_063130337 ⟸ XM_063274267
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A096MK92-F1-model_v2	AlphaFold	A0A096MK92	1-825	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699720

Promoter ID:

EPDNEW_R10243

Type:

initiation region

Name:

Ift88_1

Description:

intraflagellar transport 88

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	37,691,345 - 37,691,405	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309717	AgrOrtholog
BioCyc Gene	G2FUF-13603	BioCyc
Ensembl Genes	ENSRNOG00000009278	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012988.8	UniProtKB/TrEMBL
	ENSRNOT00000076608.3	UniProtKB/TrEMBL
	ENSRNOT00000076741.3	UniProtKB/TrEMBL
	ENSRNOT00000076839.2	UniProtKB/TrEMBL
	ENSRNOT00000118046.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	TPR-like_helical	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
KEGG Report	rno:305918	UniProtKB/TrEMBL
NCBI Gene	305918	ENTREZGENE
PANTHER	INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG	UniProtKB/TrEMBL
	INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG	UniProtKB/TrEMBL
Pfam	ANAPC3	UniProtKB/TrEMBL
	TPR_12	UniProtKB/TrEMBL
	TPR_6	UniProtKB/TrEMBL
	TPR_8	UniProtKB/TrEMBL
PhenoGen	Ift88	PhenoGen
PROSITE	TPR	UniProtKB/TrEMBL
	TPR_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009278	RatGTEx
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	HCP-like	UniProtKB/TrEMBL
	SSF48452	UniProtKB/TrEMBL
UniProt	A0A096MJ06	ENTREZGENE, UniProtKB/TrEMBL
	A0A096MJE9_RAT	UniProtKB/TrEMBL
	A0A096MK92_RAT	UniProtKB/TrEMBL
	A0A8I5ZPQ6	ENTREZGENE, UniProtKB/TrEMBL
	A6KHC0	ENTREZGENE, UniProtKB/TrEMBL
	D4ACI9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-07-09	Ift88	intraflagellar transport 88	Ift88	intraflagellar transport 88 homolog (Chlamydomonas)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ift88	intraflagellar transport 88 homolog (Chlamydomonas)	Ift88_predicted	intraflagellar transport 88 homolog (Chlamydomonas) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Ift88_predicted	intraflagellar transport 88 homolog (Chlamydomonas) (predicted)	Ttc10_predicted	tetratricopeptide repeat domain 10 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Ttc10_predicted	tetratricopeptide repeat domain 10 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - PID (archival)