Pamr1 (peptidase domain containing associated with muscle regeneration 1) - Rat Genome Database

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Gene: Pamr1 (peptidase domain containing associated with muscle regeneration 1) Rattus norvegicus
Analyze
Symbol: Pamr1
Name: peptidase domain containing associated with muscle regeneration 1
RGD ID: 1308745
Description: Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in extracellular region. Orthologous to human PAMR1 (peptidase domain containing associated with muscle regeneration 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: inactive serine protease PAMR1; LOC311252; Ramp; regeneration associated muscle protease; RGD1308745; similar to E430002G05Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83109,340,411 - 109,443,595 (+)NCBIGRCr8
mRatBN7.2388,889,061 - 88,988,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl388,889,046 - 88,988,606 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx392,387,904 - 92,487,708 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03100,986,927 - 101,086,728 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0398,811,151 - 98,910,788 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0392,403,533 - 92,502,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,403,582 - 92,502,089 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,053,895 - 99,152,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4387,754,805 - 87,847,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1387,651,265 - 87,749,636 (+)NCBI
Celera387,981,613 - 88,064,531 (+)NCBICelera
Cytogenetic Map3q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[ghi]perylene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
crocidolite asbestos  (ISO)
cytarabine  (ISO)
DDT  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ferric oxide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
glycidyl methacrylate  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
inulin  (ISO)
maneb  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
mifepristone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
propiconazole  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
testosterone  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24006456  


Genomics

Comparative Map Data
Pamr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83109,340,411 - 109,443,595 (+)NCBIGRCr8
mRatBN7.2388,889,061 - 88,988,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl388,889,046 - 88,988,606 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx392,387,904 - 92,487,708 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03100,986,927 - 101,086,728 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0398,811,151 - 98,910,788 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0392,403,533 - 92,502,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,403,582 - 92,502,089 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,053,895 - 99,152,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4387,754,805 - 87,847,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1387,651,265 - 87,749,636 (+)NCBI
Celera387,981,613 - 88,064,531 (+)NCBICelera
Cytogenetic Map3q32NCBI
PAMR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381135,431,827 - 35,530,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1135,431,823 - 35,530,300 (-)EnsemblGRCh38hg38GRCh38
GRCh371135,453,374 - 35,551,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361135,409,950 - 35,503,752 (-)NCBINCBI36Build 36hg18NCBI36
Celera1135,600,693 - 35,694,461 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1135,152,434 - 35,245,723 (-)NCBIHuRef
CHM1_11135,451,766 - 35,545,552 (-)NCBICHM1_1
T2T-CHM13v2.01135,570,662 - 35,669,082 (-)NCBIT2T-CHM13v2.0
Pamr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392102,380,325 - 102,473,386 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2102,380,357 - 102,473,386 (+)EnsemblGRCm39 Ensembl
GRCm382102,549,939 - 102,643,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2102,550,012 - 102,643,041 (+)EnsemblGRCm38mm10GRCm38
MGSCv372102,390,178 - 102,483,198 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362102,350,889 - 102,443,876 (+)NCBIMGSCv36mm8
Celera2103,792,684 - 103,881,952 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.13NCBI
Pamr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542210,828,428 - 10,913,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542210,734,673 - 10,913,258 (+)NCBIChiLan1.0ChiLan1.0
PAMR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2937,652,298 - 37,746,385 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,656,964 - 37,750,855 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,404,636 - 35,498,705 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,279,219 - 35,373,862 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,279,225 - 35,373,862 (-)Ensemblpanpan1.1panPan2
PAMR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11832,476,285 - 32,548,486 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1832,356,982 - 32,575,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1832,083,269 - 32,155,630 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01833,001,996 - 33,159,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,001,807 - 33,159,485 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11832,563,270 - 32,720,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01832,148,543 - 32,305,640 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01832,793,954 - 32,951,132 (+)NCBIUU_Cfam_GSD_1.0
Pamr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494729,559,743 - 29,639,887 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365332,684,479 - 2,764,874 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365332,684,826 - 2,764,682 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAMR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl225,514,193 - 25,591,617 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1225,422,390 - 25,591,615 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,785,480 - 27,954,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAMR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,732,311 - 29,833,646 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,774,155 - 29,833,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038126,853,740 - 126,951,420 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pamr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476711,681,203 - 11,754,194 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476711,681,209 - 11,753,310 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pamr1
620 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:332
Count of miRNA genes:209
Interacting mature miRNAs:250
Transcripts:ENSRNOT00000064282
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat

Markers in Region
RH132246  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2388,988,398 - 88,988,602 (+)MAPPERmRatBN7.2
Rnor_6.0392,501,878 - 92,502,081NCBIRnor6.0
Rnor_5.0399,151,884 - 99,152,087UniSTSRnor5.0
RGSC_v3.4387,853,520 - 87,853,723UniSTSRGSC3.4
Celera388,071,029 - 88,071,232UniSTS
RH 3.4 Map3670.4UniSTS
Cytogenetic Map3q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 58 31

Sequence


Ensembl Acc Id: ENSRNOT00000064282   ⟹   ENSRNOP00000059877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl388,889,046 - 88,988,606 (+)Ensembl
Rnor_6.0 Ensembl392,403,582 - 92,502,089 (+)Ensembl
RefSeq Acc Id: NM_001107755   ⟹   NP_001101225
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83109,344,046 - 109,443,595 (+)NCBI
mRatBN7.2388,889,061 - 88,988,615 (+)NCBI
Rnor_6.0392,403,649 - 92,495,366 (+)NCBI
Rnor_5.0399,053,895 - 99,152,100 (+)NCBI
RGSC_v3.4387,754,805 - 87,847,008 (+)RGD
Celera387,981,613 - 88,064,531 (+)RGD
Sequence:
RefSeq Acc Id: XM_063283704   ⟹   XP_063139774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83109,340,411 - 109,443,595 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101225 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139774 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79641 (Get FASTA)   NCBI Sequence Viewer  
  EDL79642 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059877.2
RefSeq Acc Id: NP_001101225   ⟸   NM_001107755
- Peptide Label: precursor
- UniProtKB: D4A0A3 (UniProtKB/TrEMBL),   A6HNP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059877   ⟸   ENSRNOT00000064282
RefSeq Acc Id: XP_063139774   ⟸   XM_063283704
- Peptide Label: isoform X1
Protein Domains
CUB   EGF-like   Peptidase S1   Sushi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A0A3-F1-model_v2 AlphaFold D4A0A3 1-720 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692248
Promoter ID:EPDNEW_R2773
Type:multiple initiation site
Name:Pamr1_1
Description:peptidase domain containing associated with muscle regeneration1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0392,403,664 - 92,403,724EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308745 AgrOrtholog
BioCyc Gene G2FUF-48595 BioCyc
Ensembl Genes ENSRNOG00000005348 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064282.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
  2.60.120.290 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro CUB UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Serine_Protease_S1-Domain UniProtKB/TrEMBL
  sperma_CUB_dom UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
KEGG Report rno:311252 UniProtKB/TrEMBL
NCBI Gene 311252 ENTREZGENE
PANTHER INACTIVE SERINE PROTEASE PAMR1 UniProtKB/TrEMBL
  PROTHROMBIN UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
  Trypsin UniProtKB/TrEMBL
PhenoGen Pamr1 PhenoGen
PROSITE CUB UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
  TRYPSIN_DOM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005348 RatGTEx
SMART CCP UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP Complement_control_module UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF/Laminin UniProtKB/TrEMBL
  SSF50494 UniProtKB/TrEMBL
UniProt A6HNP0 ENTREZGENE, UniProtKB/TrEMBL
  A6HNP1_RAT UniProtKB/TrEMBL
  D4A0A3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-10-22 Pamr1  peptidase domain containing associated with muscle regeneration 1  Ramp  regeneration associated muscle protease  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-18 Ramp  regeneration associated muscle protease  RGD1308745_predicted  similar to E430002G05Rik protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1308745_predicted  similar to E430002G05Rik protein (predicted)  LOC311252_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311252_predicted  similar to E430002G05Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL