Pamr1 (peptidase domain containing associated with muscle regeneration 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pamr1 (peptidase domain containing associated with muscle regeneration 1) Chinchilla lanigera
Analyze
Symbol: Pamr1
Name: peptidase domain containing associated with muscle regeneration 1
RGD ID: 9051909
Description: ASSOCIATED WITH congestive heart failure (ortholog); Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: inactive serine protease PAMR1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542210,828,428 - 10,913,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542210,734,673 - 10,913,258 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Pamr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542210,828,428 - 10,913,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542210,734,673 - 10,913,258 (+)NCBIChiLan1.0ChiLan1.0
PAMR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381135,431,827 - 35,530,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1135,431,823 - 35,530,300 (-)EnsemblGRCh38hg38GRCh38
GRCh371135,453,374 - 35,551,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361135,409,950 - 35,503,752 (-)NCBINCBI36Build 36hg18NCBI36
Celera1135,600,693 - 35,694,461 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1135,152,434 - 35,245,723 (-)NCBIHuRef
CHM1_11135,451,766 - 35,545,552 (-)NCBICHM1_1
T2T-CHM13v2.01135,570,662 - 35,669,082 (-)NCBIT2T-CHM13v2.0
Pamr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392102,380,325 - 102,473,386 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2102,380,357 - 102,473,386 (+)EnsemblGRCm39 Ensembl
GRCm382102,549,939 - 102,643,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2102,550,012 - 102,643,041 (+)EnsemblGRCm38mm10GRCm38
MGSCv372102,390,178 - 102,483,198 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362102,350,889 - 102,443,876 (+)NCBIMGSCv36mm8
Celera2103,792,684 - 103,881,952 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.13NCBI
Pamr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83109,340,411 - 109,443,595 (+)NCBIGRCr8
mRatBN7.2388,889,061 - 88,988,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl388,889,046 - 88,988,606 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx392,387,904 - 92,487,708 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03100,986,927 - 101,086,728 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0398,811,151 - 98,910,788 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0392,403,533 - 92,502,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl392,403,582 - 92,502,089 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,053,895 - 99,152,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4387,754,805 - 87,847,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1387,651,265 - 87,749,636 (+)NCBI
Celera387,981,613 - 88,064,531 (+)NCBICelera
Cytogenetic Map3q32NCBI
PAMR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2937,652,298 - 37,746,385 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,656,964 - 37,750,855 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,404,636 - 35,498,705 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,279,219 - 35,373,862 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,279,225 - 35,373,862 (-)Ensemblpanpan1.1panPan2
PAMR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11832,476,285 - 32,548,486 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1832,356,982 - 32,575,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1832,083,269 - 32,155,630 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01833,001,996 - 33,159,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,001,807 - 33,159,485 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11832,563,270 - 32,720,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01832,148,543 - 32,305,640 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01832,793,954 - 32,951,132 (+)NCBIUU_Cfam_GSD_1.0
Pamr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494729,559,743 - 29,639,887 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365332,684,479 - 2,764,874 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365332,684,826 - 2,764,682 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAMR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl225,514,193 - 25,591,617 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1225,422,390 - 25,591,615 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,785,480 - 27,954,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAMR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,732,311 - 29,833,646 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,774,155 - 29,833,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038126,853,740 - 126,951,420 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pamr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476711,681,203 - 11,754,194 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476711,681,209 - 11,753,310 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000021744   ⟹   ENSCLAP00000021541
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542210,828,428 - 10,913,309 (+)Ensembl
RefSeq Acc Id: XM_005384122   ⟹   XP_005384179
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542210,828,428 - 10,913,258 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005384123   ⟹   XP_005384180
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542210,828,428 - 10,913,258 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514345   ⟹   XP_013369799
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542210,734,673 - 10,913,258 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514346   ⟹   XP_013369800
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542210,734,673 - 10,913,258 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514347   ⟹   XP_013369801
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542210,761,619 - 10,913,258 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005384179   ⟸   XM_005384122
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005384180   ⟸   XM_005384123
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W199 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013369799   ⟸   XM_013514345
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013369800   ⟸   XM_013514346
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013369801   ⟸   XM_013514347
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSCLAP00000021541   ⟸   ENSCLAT00000021744
Protein Domains
CUB   EGF-like   Peptidase S1   Sushi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014744 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021744 ENTREZGENE
  ENSCLAT00000021744.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
  2.60.120.290 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro CUB_dom UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Serine_Protease_S1-Domain UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
NCBI Gene Pamr1 ENTREZGENE
PANTHER INACTIVE SERINE PROTEASE PAMR1 UniProtKB/TrEMBL
  PROTHROMBIN UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
  Trypsin UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
  TRYPSIN_DOM UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49854 UniProtKB/TrEMBL
  SSF50494 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A8C2W199 ENTREZGENE, UniProtKB/TrEMBL