Chd9 (chromodomain helicase DNA binding protein 9) - Rat Genome Database

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Gene: Chd9 (chromodomain helicase DNA binding protein 9) Rattus norvegicus
Analyze
Symbol: Chd9
Name: chromodomain helicase DNA binding protein 9
RGD ID: 1306795
Description: Predicted to enable several functions, including ATP binding activity; ATP-dependent chromatin remodeler activity; and DNA binding activity. Predicted to be involved in chromatin remodeling. Predicted to be located in cytosol and nucleoplasm. Orthologous to human CHD9 (chromodomain helicase DNA binding protein 9); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromodomain-helicase-DNA-binding protein 9; CReMM; LOC307726
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81932,114,379 - 32,337,488 (-)NCBIGRCr8
mRatBN7.21915,941,535 - 16,146,220 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1915,942,687 - 16,164,556 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01917,364,969 - 17,517,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1917,366,828 - 17,494,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01928,429,029 - 28,555,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41917,113,311 - 17,237,547 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11917,118,136 - 17,131,188 (-)NCBI
Celera1915,846,898 - 16,050,967 (-)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP,ISO)
chromium(6+)  (ISO)
clorgyline  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyproterone acetate  (ISO)
dexamethasone  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
leflunomide  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-ethyl-N-nitrosourea  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
rimonabant  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
torcetrapib  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16523501  


Genomics

Comparative Map Data
Chd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81932,114,379 - 32,337,488 (-)NCBIGRCr8
mRatBN7.21915,941,535 - 16,146,220 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1915,942,687 - 16,164,556 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01917,364,969 - 17,517,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1917,366,828 - 17,494,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01928,429,029 - 28,555,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41917,113,311 - 17,237,547 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11917,118,136 - 17,131,188 (-)NCBI
Celera1915,846,898 - 16,050,967 (-)NCBICelera
Cytogenetic Map19p11NCBI
CHD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381653,054,991 - 53,327,497 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1653,054,991 - 53,329,150 (+)EnsemblGRCh38hg38GRCh38
GRCh371653,088,903 - 53,361,409 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361651,646,446 - 51,918,915 (+)NCBINCBI36Build 36hg18NCBI36
Build 341651,747,338 - 51,918,283NCBI
Celera1637,603,818 - 37,876,244 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
HuRef1638,976,261 - 39,249,079 (+)NCBIHuRef
CHM1_11654,495,988 - 54,768,494 (+)NCBICHM1_1
T2T-CHM13v2.01658,852,750 - 59,125,294 (+)NCBIT2T-CHM13v2.0
Chd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39891,554,930 - 91,781,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl891,554,980 - 91,781,144 (+)EnsemblGRCm39 Ensembl
GRCm38890,828,302 - 91,054,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl890,828,352 - 91,054,516 (+)EnsemblGRCm38mm10GRCm38
MGSCv37893,352,734 - 93,578,407 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36893,718,942 - 93,944,613 (+)NCBIMGSCv36mm8
Celera895,139,591 - 95,369,465 (+)NCBICelera
Cytogenetic Map8C4NCBI
cM Map844.25NCBI
Chd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543310,900,721 - 11,158,598 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543310,900,771 - 11,161,161 (+)NCBIChiLan1.0ChiLan1.0
CHD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21862,503,972 - 62,776,590 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11668,423,345 - 68,695,209 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01633,310,358 - 33,582,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11652,271,519 - 52,665,290 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1652,550,321 - 52,665,290 (+)Ensemblpanpan1.1panPan2
CHD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,341,274 - 62,560,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,343,912 - 62,510,315 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha258,971,914 - 59,195,407 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0262,880,823 - 63,104,712 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl262,884,381 - 63,104,655 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,704,172 - 59,927,509 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0260,724,805 - 60,948,324 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0261,607,261 - 61,830,910 (-)NCBIUU_Cfam_GSD_1.0
Chd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934953,517,943 - 53,766,567 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364755,930,892 - 6,071,425 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364755,864,114 - 6,071,132 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl631,830,505 - 31,980,085 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1631,829,870 - 32,071,975 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CHD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1538,918,490 - 39,119,921 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl538,944,420 - 39,120,057 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604737,266,393 - 37,543,110 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247573,373,703 - 3,572,496 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247573,371,125 - 3,627,157 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chd9
1117 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:151
Interacting mature miRNAs:168
Transcripts:ENSRNOT00000074417
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat

Markers in Region
RH143057  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21915,943,202 - 15,943,404 (+)MAPPERmRatBN7.2
Rnor_6.01917,366,637 - 17,366,838NCBIRnor6.0
Rnor_5.01928,430,692 - 28,430,893UniSTSRnor5.0
RGSC_v3.41917,112,432 - 17,112,633UniSTSRGSC3.4
Celera1915,848,566 - 15,848,767UniSTS
Cytogenetic Map19p11UniSTS
BE105057  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21915,942,222 - 15,942,382 (+)MAPPERmRatBN7.2
Rnor_6.01917,365,657 - 17,365,816NCBIRnor6.0
Rnor_5.01928,429,712 - 28,429,871UniSTSRnor5.0
RGSC_v3.41917,111,452 - 17,111,611UniSTSRGSC3.4
Celera1915,847,586 - 15,847,745UniSTS
Cytogenetic Map19p11UniSTS
RH141614  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21916,060,430 - 16,060,626 (+)MAPPERmRatBN7.2
Rnor_6.01917,486,447 - 17,486,642NCBIRnor6.0
Rnor_5.01928,546,907 - 28,547,102UniSTSRnor5.0
RGSC_v3.41917,229,314 - 17,229,509UniSTSRGSC3.4
Celera1915,965,119 - 15,965,314UniSTS
Cytogenetic Map19p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_002725383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_226324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000075914   ⟹   ENSRNOP00000068032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1917,402,015 - 17,402,118 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075970   ⟹   ENSRNOP00000068108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1917,366,828 - 17,399,543 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075991   ⟹   ENSRNOP00000068278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1915,942,687 - 16,094,155 (-)Ensembl
Rnor_6.0 Ensembl1917,366,828 - 17,399,548 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076138   ⟹   ENSRNOP00000067932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1915,942,687 - 16,119,360 (-)Ensembl
Rnor_6.0 Ensembl1917,414,819 - 17,494,585 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076814   ⟹   ENSRNOP00000068157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1917,414,819 - 17,494,585 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076830   ⟹   ENSRNOP00000068501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1917,402,015 - 17,402,118 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078786   ⟹   ENSRNOP00000070362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1915,942,687 - 16,164,556 (-)Ensembl
Rnor_6.0 Ensembl1917,370,253 - 17,494,516 (-)Ensembl
RefSeq Acc Id: XM_039098054   ⟹   XP_038953982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,292,901 (-)NCBI
mRatBN7.21915,941,535 - 16,120,052 (-)NCBI
RefSeq Acc Id: XM_039098055   ⟹   XP_038953983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,319,040 (-)NCBI
mRatBN7.21915,941,535 - 16,146,220 (-)NCBI
RefSeq Acc Id: XM_039098056   ⟹   XP_038953984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,258,566 (-)NCBI
mRatBN7.21915,941,535 - 16,085,736 (-)NCBI
RefSeq Acc Id: XM_039098057   ⟹   XP_038953985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,264,818 (-)NCBI
mRatBN7.21915,941,535 - 16,091,985 (-)NCBI
RefSeq Acc Id: XM_039098058   ⟹   XP_038953986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,264,543 (-)NCBI
mRatBN7.21915,941,535 - 16,091,684 (-)NCBI
RefSeq Acc Id: XM_039098059   ⟹   XP_038953987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,265,028 (-)NCBI
mRatBN7.21915,941,535 - 16,092,190 (-)NCBI
RefSeq Acc Id: XM_039098060   ⟹   XP_038953988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,292,903 (-)NCBI
mRatBN7.21915,941,535 - 16,120,053 (-)NCBI
RefSeq Acc Id: XM_039098062   ⟹   XP_038953990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,292,902 (-)NCBI
mRatBN7.21915,941,535 - 16,120,053 (-)NCBI
RefSeq Acc Id: XM_039098063   ⟹   XP_038953991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,240,023 (-)NCBI
mRatBN7.21915,941,535 - 16,049,534 (-)NCBI
RefSeq Acc Id: XM_039098064   ⟹   XP_038953992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,240,023 (-)NCBI
mRatBN7.21915,941,535 - 16,049,534 (-)NCBI
RefSeq Acc Id: XM_039098068   ⟹   XP_038953996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,198,728 (-)NCBI
mRatBN7.21915,941,535 - 16,025,150 (-)NCBI
RefSeq Acc Id: XM_039098069   ⟹   XP_038953997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,153,416 - 32,292,916 (-)NCBI
mRatBN7.21915,980,579 - 16,120,060 (-)NCBI
RefSeq Acc Id: XM_063278586   ⟹   XP_063134656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,337,488 (-)NCBI
RefSeq Acc Id: XM_063278587   ⟹   XP_063134657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,193,028 (-)NCBI
RefSeq Acc Id: XM_063278588   ⟹   XP_063134658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81932,114,379 - 32,182,169 (-)NCBI
Ensembl Acc Id: ENSRNOP00000068278   ⟸   ENSRNOT00000075991
Ensembl Acc Id: ENSRNOP00000068108   ⟸   ENSRNOT00000075970
Ensembl Acc Id: ENSRNOP00000068032   ⟸   ENSRNOT00000075914
Ensembl Acc Id: ENSRNOP00000068501   ⟸   ENSRNOT00000076830
Ensembl Acc Id: ENSRNOP00000068157   ⟸   ENSRNOT00000076814
Ensembl Acc Id: ENSRNOP00000067932   ⟸   ENSRNOT00000076138
Ensembl Acc Id: ENSRNOP00000070362   ⟸   ENSRNOT00000078786
RefSeq Acc Id: XP_038953983   ⟸   XM_039098055
- Peptide Label: isoform X1
- UniProtKB: A0A096MJV7 (UniProtKB/TrEMBL),   A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953988   ⟸   XM_039098060
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JXQ2 (UniProtKB/TrEMBL),   A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953990   ⟸   XM_039098062
- Peptide Label: isoform X3
- UniProtKB: A0A096MIZ4 (UniProtKB/TrEMBL),   A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953982   ⟸   XM_039098054
- Peptide Label: isoform X1
- UniProtKB: A0A096MJV7 (UniProtKB/TrEMBL),   A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953987   ⟸   XM_039098059
- Peptide Label: isoform X1
- UniProtKB: A0A096MJV7 (UniProtKB/TrEMBL),   A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953985   ⟸   XM_039098057
- Peptide Label: isoform X1
- UniProtKB: A0A096MJV7 (UniProtKB/TrEMBL),   A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953986   ⟸   XM_039098058
- Peptide Label: isoform X1
- UniProtKB: A0A096MJV7 (UniProtKB/TrEMBL),   A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953984   ⟸   XM_039098056
- Peptide Label: isoform X1
- UniProtKB: A0A096MJV7 (UniProtKB/TrEMBL),   A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953992   ⟸   XM_039098064
- Peptide Label: isoform X5
- UniProtKB: A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953991   ⟸   XM_039098063
- Peptide Label: isoform X4
- UniProtKB: A6KD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953996   ⟸   XM_039098068
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038953997   ⟸   XM_039098069
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063134656   ⟸   XM_063278586
- Peptide Label: isoform X1
- UniProtKB: A6KD85 (UniProtKB/TrEMBL),   A0A096MJV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134657   ⟸   XM_063278587
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063134658   ⟸   XM_063278588
- Peptide Label: isoform X8
Protein Domains
Chromo   Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXQ2-F1-model_v2 AlphaFold A0A0G2JXQ2 1-2596 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306795 AgrOrtholog
BioCyc Gene G2FUF-6356 BioCyc
Ensembl Genes ENSRNOG00000049302 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075991.3 UniProtKB/TrEMBL
  ENSRNOT00000076138.2 UniProtKB/TrEMBL
  ENSRNOT00000078786.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
  3.40.5.120 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro BRK_domain UniProtKB/TrEMBL
  BRK_sf UniProtKB/TrEMBL
  CHD UniProtKB/TrEMBL
  Chromo_domain UniProtKB/TrEMBL
  Chromo_domain/shadow UniProtKB/TrEMBL
  Chromodomain-like UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
NCBI Gene 307726 ENTREZGENE
PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9 UniProtKB/TrEMBL
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9 UniProtKB/TrEMBL
Pfam BRK UniProtKB/TrEMBL
  Chromo UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Chd9 PhenoGen
PROSITE CHROMO_2 UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000049302 RatGTEx
SMART BRK UniProtKB/TrEMBL
  CHROMO UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF160481 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF54160 UniProtKB/TrEMBL
UniProt A0A096MIZ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A096MJV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JXQ2 ENTREZGENE, UniProtKB/TrEMBL
  A6KD85 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Chd9  chromodomain helicase DNA binding protein 9   Chd9_predicted  chromodomain helicase DNA binding protein 9 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chd9_predicted  chromodomain helicase DNA binding protein 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED