Wdr20 (WD repeat domain 20) - Rat Genome Database

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Gene: Wdr20 (WD repeat domain 20) Rattus norvegicus
Analyze
Symbol: Wdr20
Name: WD repeat domain 20
RGD ID: 1306499
Description: Predicted to enable deubiquitinase activator activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human WDR20 (WD repeat domain 20); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314453; WD repeat domain 20a; WD repeat-containing protein 20; Wdr20a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,572,502 - 135,642,688 (+)NCBIGRCr8
mRatBN7.26129,751,952 - 129,821,464 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6129,752,014 - 129,847,339 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6129,928,996 - 129,998,124 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,224,988 - 130,294,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06129,588,973 - 129,658,402 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,156,984 - 135,226,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,156,984 - 135,226,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,187,523 - 145,256,870 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,460,172 - 135,529,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16135,466,451 - 135,523,981 (+)NCBI
Celera6127,319,986 - 127,389,463 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Wdr20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,572,502 - 135,642,688 (+)NCBIGRCr8
mRatBN7.26129,751,952 - 129,821,464 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6129,752,014 - 129,847,339 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6129,928,996 - 129,998,124 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,224,988 - 130,294,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06129,588,973 - 129,658,402 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,156,984 - 135,226,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,156,984 - 135,226,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,187,523 - 145,256,870 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,460,172 - 135,529,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16135,466,451 - 135,523,981 (+)NCBI
Celera6127,319,986 - 127,389,463 (+)NCBICelera
Cytogenetic Map6q32NCBI
WDR20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814102,139,423 - 102,224,839 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14102,139,503 - 102,224,847 (+)EnsemblGRCh38hg38GRCh38
GRCh3714102,605,760 - 102,690,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614101,675,965 - 101,759,763 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414101,675,964 - 101,746,619NCBI
Celera1482,660,708 - 82,744,515 (+)NCBICelera
Cytogenetic Map14q32.31NCBI
HuRef1482,785,154 - 82,868,856 (+)NCBIHuRef
CHM1_114102,544,044 - 102,627,837 (+)NCBICHM1_1
T2T-CHM13v2.01496,375,006 - 96,460,287 (+)NCBIT2T-CHM13v2.0
Wdr20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912110,701,459 - 110,770,709 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12110,704,378 - 110,770,672 (+)EnsemblGRCm39 Ensembl
GRCm3812110,735,025 - 110,804,275 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12110,737,944 - 110,804,238 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712111,976,159 - 112,033,238 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,185,756 - 111,242,835 (+)NCBIMGSCv36mm8
Celera12111,930,809 - 111,988,220 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.78NCBI
Wdr20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555381,520,342 - 1,590,086 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555381,520,336 - 1,590,824 (+)NCBIChiLan1.0ChiLan1.0
WDR20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215103,292,128 - 103,376,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114102,508,621 - 102,592,058 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01482,759,715 - 82,843,491 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114102,577,138 - 102,660,459 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14102,577,138 - 102,660,459 (+)Ensemblpanpan1.1panPan2
WDR20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,150,090 - 70,208,683 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,146,967 - 70,199,975 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha869,661,023 - 69,723,025 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0870,424,795 - 70,486,624 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl870,424,842 - 70,486,602 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,089,081 - 70,151,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,154,432 - 70,216,206 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0870,554,779 - 70,616,964 (+)NCBIUU_Cfam_GSD_1.0
Wdr20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,767,187 - 3,861,060 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936835355,288 - 428,725 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936835355,300 - 428,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27129,586,786 - 129,644,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,064,362 - 80,152,706 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2480,064,421 - 80,152,881 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605367,263,768 - 67,348,340 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247342,146,404 - 2,205,324 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247342,145,812 - 2,205,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr20
245 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:584
Count of miRNA genes:267
Interacting mature miRNAs:336
Transcripts:ENSRNOT00000009709
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat

Markers in Region
RH136892  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26129,819,622 - 129,819,818 (+)MAPPERmRatBN7.2
Rnor_6.06135,224,584 - 135,224,779NCBIRnor6.0
Rnor_5.06145,189,169 - 145,189,364UniSTSRnor5.0
RGSC_v3.46135,527,485 - 135,527,680UniSTSRGSC3.4
Celera6127,387,622 - 127,387,817UniSTS
RH 3.4 Map6784.7UniSTS
Cytogenetic Map6q32UniSTS
RH139772  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26129,809,502 - 129,809,715 (+)MAPPERmRatBN7.2
Rnor_6.06135,214,464 - 135,214,676NCBIRnor6.0
Rnor_5.06145,199,272 - 145,199,484UniSTSRnor5.0
RGSC_v3.46135,517,365 - 135,517,577UniSTSRGSC3.4
Celera6127,377,131 - 127,377,343UniSTS
RH 3.4 Map6785.8UniSTS
Cytogenetic Map6q32UniSTS
UniSTS:224875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26129,808,750 - 129,808,914 (+)MAPPERmRatBN7.2
Rnor_6.06135,213,712 - 135,213,875NCBIRnor6.0
Rnor_5.06145,200,073 - 145,200,236UniSTSRnor5.0
RGSC_v3.46135,516,613 - 135,516,776UniSTSRGSC3.4
Celera6127,376,379 - 127,376,542UniSTS
Cytogenetic Map6q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 13 48 20 25 11
Low 3 43 47 41 6 41 8 11 26 15 16 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000009709   ⟹   ENSRNOP00000009709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,752,014 - 129,821,464 (+)Ensembl
Rnor_6.0 Ensembl6135,156,984 - 135,226,425 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082595   ⟹   ENSRNOP00000072178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,752,138 - 129,809,915 (+)Ensembl
Rnor_6.0 Ensembl6135,157,067 - 135,216,768 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099617   ⟹   ENSRNOP00000085763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,752,123 - 129,847,339 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105069   ⟹   ENSRNOP00000083245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,752,104 - 129,809,926 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106359   ⟹   ENSRNOP00000077142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,752,014 - 129,823,792 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114885   ⟹   ENSRNOP00000087682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,752,014 - 129,823,792 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115600   ⟹   ENSRNOP00000094139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,752,014 - 129,795,723 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118053   ⟹   ENSRNOP00000083213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,752,014 - 129,799,522 (+)Ensembl
RefSeq Acc Id: NM_001100894   ⟹   NP_001094364
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,246 - 135,642,688 (+)NCBI
mRatBN7.26129,752,014 - 129,821,464 (+)NCBI
Rnor_6.06135,156,984 - 135,226,425 (+)NCBI
Rnor_5.06145,187,523 - 145,256,870 (-)NCBI
RGSC_v3.46135,460,172 - 135,529,326 (+)RGD
Celera6127,319,986 - 127,389,463 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240583   ⟹   XP_006240645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,294 - 135,635,187 (+)NCBI
mRatBN7.26129,752,002 - 129,813,967 (+)NCBI
Rnor_6.06135,157,046 - 135,218,924 (+)NCBI
Rnor_5.06145,187,523 - 145,256,870 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240586   ⟹   XP_006240648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,290 - 135,641,168 (+)NCBI
mRatBN7.26129,751,984 - 129,819,945 (+)NCBI
Rnor_6.06135,157,046 - 135,224,906 (+)NCBI
Rnor_5.06145,187,523 - 145,256,870 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764935   ⟹   XP_008763157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,294 - 135,641,168 (+)NCBI
mRatBN7.26129,752,020 - 129,819,945 (+)NCBI
Rnor_6.06135,157,043 - 135,224,906 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594186   ⟹   XP_017449675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,284 - 135,635,187 (+)NCBI
mRatBN7.26129,751,976 - 129,813,967 (+)NCBI
Rnor_6.06135,157,043 - 135,218,924 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594187   ⟹   XP_017449676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,284 - 135,641,168 (+)NCBI
mRatBN7.26129,751,977 - 129,819,945 (+)NCBI
Rnor_6.06135,157,043 - 135,224,906 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594188   ⟹   XP_017449677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,285 - 135,641,168 (+)NCBI
mRatBN7.26129,751,978 - 129,819,945 (+)NCBI
Rnor_6.06135,157,044 - 135,224,906 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112410   ⟹   XP_038968338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,284 - 135,635,187 (+)NCBI
mRatBN7.26129,751,977 - 129,813,967 (+)NCBI
RefSeq Acc Id: XM_039112411   ⟹   XP_038968339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,284 - 135,635,187 (+)NCBI
mRatBN7.26129,751,977 - 129,813,967 (+)NCBI
RefSeq Acc Id: XM_039112414   ⟹   XP_038968342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,572,502 - 135,617,940 (+)NCBI
mRatBN7.26129,751,952 - 129,795,560 (+)NCBI
RefSeq Acc Id: XM_039112415   ⟹   XP_038968343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,294 - 135,617,940 (+)NCBI
mRatBN7.26129,752,021 - 129,799,133 (+)NCBI
RefSeq Acc Id: XM_063262014   ⟹   XP_063118084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,282 - 135,635,187 (+)NCBI
RefSeq Acc Id: XM_063262015   ⟹   XP_063118085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,284 - 135,635,187 (+)NCBI
RefSeq Acc Id: XM_063262016   ⟹   XP_063118086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,286 - 135,635,187 (+)NCBI
RefSeq Acc Id: XM_063262017   ⟹   XP_063118087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,287 - 135,641,168 (+)NCBI
RefSeq Acc Id: XM_063262018   ⟹   XP_063118088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,287 - 135,635,187 (+)NCBI
RefSeq Acc Id: XM_063262019   ⟹   XP_063118089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,293 - 135,635,187 (+)NCBI
RefSeq Acc Id: XM_063262020   ⟹   XP_063118090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,289 - 135,635,187 (+)NCBI
RefSeq Acc Id: XM_063262021   ⟹   XP_063118091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,286 - 135,635,187 (+)NCBI
RefSeq Acc Id: XM_063262022   ⟹   XP_063118092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,289 - 135,635,187 (+)NCBI
RefSeq Acc Id: XM_063262023   ⟹   XP_063118093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,293 - 135,620,557 (+)NCBI
RefSeq Acc Id: XR_005505530
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,573,293 - 135,629,392 (+)NCBI
mRatBN7.26129,752,012 - 129,808,165 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001094364 (Get FASTA)   NCBI Sequence Viewer  
  XP_006240645 (Get FASTA)   NCBI Sequence Viewer  
  XP_006240648 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763157 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449675 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449676 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449677 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968338 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968342 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968343 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118084 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118085 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118086 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118087 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118088 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118089 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118090 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118091 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118092 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118093 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91299 (Get FASTA)   NCBI Sequence Viewer  
  EDL97500 (Get FASTA)   NCBI Sequence Viewer  
  EDL97501 (Get FASTA)   NCBI Sequence Viewer  
  EDL97502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009709
  ENSRNOP00000009709.5
  ENSRNOP00000072178.2
  ENSRNOP00000077142
  ENSRNOP00000077142.1
  ENSRNOP00000083213.1
  ENSRNOP00000083245.1
  ENSRNOP00000085763.1
  ENSRNOP00000087682
  ENSRNOP00000087682.1
  ENSRNOP00000094139
  ENSRNOP00000094139.1
Reference Protein Sequences
RefSeq Acc Id: NP_001094364   ⟸   NM_001100894
- UniProtKB: D3ZVJ9 (UniProtKB/TrEMBL),   A0A0G2K2B7 (UniProtKB/TrEMBL),   A6KBN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240648   ⟸   XM_006240586
- Peptide Label: isoform X13
- UniProtKB: A0A8I6G8P3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240645   ⟸   XM_006240583
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K2B7 (UniProtKB/TrEMBL),   A0A8I6A891 (UniProtKB/TrEMBL),   A6KBN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763157   ⟸   XM_008764935
- Peptide Label: isoform X16
- UniProtKB: A0A8I5ZK85 (UniProtKB/TrEMBL),   A0A8I6A274 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449676   ⟸   XM_017594187
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K2B7 (UniProtKB/TrEMBL),   A6KBN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449675   ⟸   XM_017594186
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K2B7 (UniProtKB/TrEMBL),   A6KBN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449677   ⟸   XM_017594188
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K2B7 (UniProtKB/TrEMBL),   A6KBN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072178   ⟸   ENSRNOT00000082595
RefSeq Acc Id: ENSRNOP00000009709   ⟸   ENSRNOT00000009709
RefSeq Acc Id: XP_038968342   ⟸   XM_039112414
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AK72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968338   ⟸   XM_039112410
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K2B7 (UniProtKB/TrEMBL),   A6KBN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968339   ⟸   XM_039112411
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K2B7 (UniProtKB/TrEMBL),   A6KBN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968343   ⟸   XM_039112415
- Peptide Label: isoform X18
- UniProtKB: A0A8I6A274 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000083245   ⟸   ENSRNOT00000105069
RefSeq Acc Id: ENSRNOP00000094139   ⟸   ENSRNOT00000115600
RefSeq Acc Id: ENSRNOP00000087682   ⟸   ENSRNOT00000114885
RefSeq Acc Id: ENSRNOP00000077142   ⟸   ENSRNOT00000106359
RefSeq Acc Id: ENSRNOP00000083213   ⟸   ENSRNOT00000118053
RefSeq Acc Id: ENSRNOP00000085763   ⟸   ENSRNOT00000099617
RefSeq Acc Id: XP_063118084   ⟸   XM_063262014
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118085   ⟸   XM_063262015
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118086   ⟸   XM_063262016
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063118091   ⟸   XM_063262021
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063118087   ⟸   XM_063262017
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063118088   ⟸   XM_063262018
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063118090   ⟸   XM_063262020
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063118092   ⟸   XM_063262022
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063118089   ⟸   XM_063262019
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063118093   ⟸   XM_063262023
- Peptide Label: isoform X17

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K2B7-F1-model_v2 AlphaFold A0A0G2K2B7 1-584 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694833
Promoter ID:EPDNEW_R5355
Type:multiple initiation site
Name:Wdr20_1
Description:WD repeat domain 20
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06135,157,104 - 135,157,164EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306499 AgrOrtholog
BioCyc Gene G2FUF-35870 BioCyc
Ensembl Genes ENSRNOG00000007333 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009709 ENTREZGENE
  ENSRNOT00000009709.8 UniProtKB/TrEMBL
  ENSRNOT00000082595.2 UniProtKB/TrEMBL
  ENSRNOT00000099617.1 UniProtKB/TrEMBL
  ENSRNOT00000105069.1 UniProtKB/TrEMBL
  ENSRNOT00000106359.1 UniProtKB/TrEMBL
  ENSRNOT00000114885.1 UniProtKB/TrEMBL
  ENSRNOT00000115600.1 UniProtKB/TrEMBL
  ENSRNOT00000118053.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7309351 IMAGE-MGC_LOAD
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:314453 UniProtKB/TrEMBL
MGC_CLONE MGC:109230 IMAGE-MGC_LOAD
NCBI Gene 314453 ENTREZGENE
PANTHER WD REPEAT PROTEIN UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 20 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Wdr20 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007333 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2K2B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZK85 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWH6_RAT UniProtKB/TrEMBL
  A0A8I6A274 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A891 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AK72 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G8P3 ENTREZGENE, UniProtKB/TrEMBL
  A6KBM9_RAT UniProtKB/TrEMBL
  A6KBN0 ENTREZGENE, UniProtKB/TrEMBL
  A6KBN1_RAT UniProtKB/TrEMBL
  D3ZVJ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-04 Wdr20  WD repeat domain 20  Wdr20a  WD repeat domain 20a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Wdr20a  WD repeat domain 20a  Wdr20  WD repeat domain 20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Wdr20  WD repeat domain 20  Wdr20_predicted  WD repeat domain 20 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Wdr20_predicted  WD repeat domain 20 (predicted)      Symbol and Name status set to approved 70820 APPROVED