Wdr20 (WD repeat domain 20) - Rat Genome Database

Name: Wdr20
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Wdr20 (WD repeat domain 20) Ictidomys tridecemlineatus

Analyze

Symbol:

Wdr20

Name:

WD repeat domain 20

RGD ID:

12567126

Description:

ENCODES a protein that exhibits deubiquitinase activator activity (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); genetic disease (ortholog); thyroid gland papillary carcinoma (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

WD repeat domain 20, transcript variant X1; WD repeat domain 20, transcript variant X2; WD repeat domain 20, transcript variant X3; WD repeat domain 20, transcript variant X4; WD repeat-containing protein 20

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR20 (WD repeat domain 20)	NCBI	Ortholog
Mus musculus (house mouse):	Wdr20 (WD repeat domain 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Wdr20 (WD repeat domain 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wdr20 (WD repeat domain 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR20 (WD repeat domain 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR20 (WD repeat domain 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR20 (WD repeat domain 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WDR20 (WD repeat domain 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr20 (WD repeat domain 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	3,767,187 - 3,861,060 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936835	355,288 - 428,725 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936835	355,300 - 428,723 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease axonal type 2O (ISO)

genetic disease (ISO)

thyroid gland papillary carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

deubiquitinase activator activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Wdr20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	3,767,187 - 3,861,060 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936835	355,288 - 428,725 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936835	355,300 - 428,723 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	102,139,423 - 102,224,839 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	102,139,503 - 102,224,847 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	102,605,760 - 102,690,010 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	101,675,965 - 101,759,763 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	101,675,964 - 101,746,619	NCBI
Celera	14	82,660,708 - 82,744,515 (+)	NCBI		Celera
Cytogenetic Map	14	q32.31	NCBI
HuRef	14	82,785,154 - 82,868,856 (+)	NCBI		HuRef
CHM1_1	14	102,544,044 - 102,627,837 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	96,375,006 - 96,460,287 (+)	NCBI		T2T-CHM13v2.0

Wdr20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	110,701,459 - 110,770,709 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	110,704,378 - 110,770,672 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	110,735,025 - 110,804,275 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	110,737,944 - 110,804,238 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	111,976,159 - 112,033,238 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	111,185,756 - 111,242,835 (+)	NCBI		MGSCv36	mm8
Celera	12	111,930,809 - 111,988,220 (+)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	60.78	NCBI

Wdr20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	135,572,502 - 135,642,688 (+)	NCBI		GRCr8
mRatBN7.2	6	129,751,952 - 129,821,464 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	129,752,014 - 129,847,339 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	129,928,996 - 129,998,124 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	130,224,988 - 130,294,116 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	129,588,973 - 129,658,402 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	135,156,984 - 135,226,425 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	135,156,984 - 135,226,425 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	145,187,523 - 145,256,870 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	135,460,172 - 135,529,326 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	135,466,451 - 135,523,981 (+)	NCBI
Celera	6	127,319,986 - 127,389,463 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

Wdr20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	1,520,342 - 1,590,086 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	1,520,336 - 1,590,824 (+)	NCBI	ChiLan1.0	ChiLan1.0

WDR20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	103,292,128 - 103,376,004 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	102,508,621 - 102,592,058 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	82,759,715 - 82,843,491 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	102,577,138 - 102,660,459 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	102,577,138 - 102,660,459 (+)	Ensembl	panpan1.1		panPan2

WDR20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	70,150,090 - 70,208,683 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	70,146,967 - 70,199,975 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	69,661,023 - 69,723,025 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	70,424,795 - 70,486,624 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	70,424,842 - 70,486,602 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	70,089,081 - 70,151,247 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	70,154,432 - 70,216,206 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	70,554,779 - 70,616,964 (+)	NCBI		UU_Cfam_GSD_1.0

WDR20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	7	129,586,786 - 129,644,806 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	80,064,362 - 80,152,706 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	80,064,421 - 80,152,881 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	67,263,768 - 67,348,340 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wdr20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	2,146,404 - 2,205,324 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	2,145,812 - 2,205,365 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005340996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005341000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000006532 ⟹ ENSSTOP00000005841

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936835	355,288 - 428,725 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000033625 ⟹ ENSSTOP00000024441

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936835	355,288 - 428,725 (+)	Ensembl

RefSeq Acc Id:

XM_005340996 ⟹ XP_005341053

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,187 - 3,840,593 (-)	NCBI
SpeTri2.0	NW_004936835	355,300 - 428,723 (+)	NCBI

Sequence:

show sequence

AGCGCCGGGGACGGCGCCTGCGCGGTGGGCGTGATCCGGGCACTTAGGGCAGGATGAACGCTGC
TTTCCAAGATGGCGACGGAGGGAGGAGGGAAGGAGATGAACGAGATTAAGACCCAATTCACCAC
CCGGGAAGGTCTGTACAAGCTGCTACCACACTCGGAGTACAGCCGGCCCAACCGGGTGCCCTTC
AACTCGCAGGGATCCAACCCTGTCCGCGTCTCCTTCGTCAACCTCAACGACCAGTCTGGCAACG
GCGACCGCCTCTGCTTCAATGTGGGCCGGGAGCTCTACTTCTATATCTACAAGGGGGTCCGCAA
GGCTGCTGACTTGAGTAAACCAATAGATAAAAGGATATACAAAGGAACACAGCCTACTTGTCAT
GACTTCAACCACCTAACAGCCACAGCAGAAAGTGTCTCTCTCCTAGTGGGCTTTTCCGCAGGCC
AAGTCCAGCTTATAGACCCAATCAAAAAAGAAACTAGCAAACTATTTAATGAGGAAAGACTAAT
AGACAAGGCACGCGTAACCTGTGTCAAATGGGTGCCCGGTTCGGAAAGCCTTTTCCTAGTAGCC
CATTCGAGTGGGAACATGTACTTGTATAATGTGGAGCACACTTGTGGCACCACAGCCCCCCACT
ACCAGCTTCTGAAGCAGGGAGAGAGCTTTGCCGTGCACACTTGCAAGAGCAAATCCACGAGGAA
CCCTCTCCTTAAGTGGACGGTGGGCGAGGGGGCCCTCAGCGAGTTTGCTTTCTCCCCAGATGGC
AAGTTCTTAGCATGCGTGAGCCAGGACGGGTTTCTGCGGGTGTTCAATTTCGACTCGGTGGAGC
TGCACGGTACGATGAAAAGCTACTTTGGGGGCTTGCTGTGTGTGTGCTGGAGCCCAGATGGCAA
GTACATTGTGACAGGTGGAGAGGACGACTTGGTGACAGTCTGGTCCTTTGTAGACTGCCGAGTA
ATAGCTAGAGGCCACGGGCACAAATCCTGGGTCAGTGTTGTGGCATTCGATCCCTATACTACTA
GCGTAGAAGAAAGCGACCCTATGGAGTTTAGTGGCAGTGATGAGGACTTCCAGGACCTTCTTCA
TTTTGGCAGAGATCGAGCAAACAGTACACAGTCCCGGCTGTCCAAGCGGAACTCTACCGACAGC
CGCCCCGTAAGTGTTACGTACCGGTTTGGTTCAGTGGGCCAGGATACACAGCTGTGTTTGTGGG
ACCTTACGGAAGACATCCTTTTCCCTCACCAACCCCTCTCAAGAGCAAGGACACACACAAATGT
CATGAATGCCACAAGTCCTCCCGCTGGAAGTAATGGGAACAGTGTCACAACACCCGGGAACTCT
GTGCCCCCTCCACTGCCTCGGTCCAACAGCCTTCCCCACTCGGCGGTCTCCAATGCAGGCAGCA
AAAGCAGCGTCATGGATGGGGCCATTGCCTCTGGGGTCAGCAAATTCGCAACACTCTCACTGCA
CGACCGAAAGGAGAGACATCATGAGAAAGACCACAAGCGAAACCATAGCATGGGACACATTTCT
AGCAAGAGCAGTGACAAACTGAATCTAGTTACTAAAACCAAAACGGACCCCGCTAAAACTTTGG
GAACGCCATTGTGTCCTCGGATGGAAGACGTTCCCTTGTTAGAGCCTCTGATCTGTAAAAAGAT
AGCACATGAAAGACTGACTGTATTAATTTTTCTTGAAGACTGTATAGTCACTGCTTGTCAGGAG
GGATTTATTTGCACATGGGGAAGGCCTGGTAAAGTGGGCTTATTGTCATCCCCAAACCAGGCCA
GTTCTCCAGGTGGAACTGTAGTGTAGCGACCCCACTGCGCTCAGACTCCCCGACGCGCGGGACT
GCAGGGACCGAGGATGACGACGGAGAGCCGCGCTGGAGCCACGCCAGGGTGGCAGGCCTCAGGC
AGGCAGGCAGACATCCCGAGGGCCGTGCAGACCCGTGATGTGGTGCCGTGCTGCGCACTCTGCT
GCCCGCCCAAAGAAGTTTCCATTTGAAGTCGGTCTGTTGGGGCTGCAGTAAAAATAAGAAATGG
TGTTTTCTTGTTTTTTACTCTAAAACTCGATGTAATGAAATCTCACACATATATAATATATACA
TATATACATAGTGTAAATAAAGTGCTTCTTGGACAGAGACCTCCTTGATTCAGCTGTTACGAGT
AGTACTTCCCTCACTGGTTTTGCACTGGTTTTTTATACTTTGGGTGGTCAGAAGACAACCTAGA
ATGCACTCAAACAGAAAGGGTTTACTTTCTGACTTAAATGTGTAATTCAGGAAGGTGTATGCGT
CAGTCTTACATGTTGAAATATTGTTTGCACTTCAATAGTTTAATGCTAATAGAAAATGGCTCTG
AGTGTGGTGGATCCCTGGCCCCTCACGGTGTGAAGGGAAGACATCCTTTTTTATCTGTTAATGT
TTATTTTAATACTGTTGTTTCTAATGCAATCAACTCTGTATAATGTGTATATATAATGTAATTC
TGCAACTGGGGGAAATAGCTACTTCACTAGTACTTTTCATCATTTAAGAGTGATATTTCTAATT
TACAAGAAACATTAATATTAAAATTATCTTGAATATA

hide sequence

RefSeq Acc Id:

XM_005341000 ⟹ XP_005341057

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,187 - 3,840,595 (-)	NCBI
SpeTri2.0	NW_004936835	355,318 - 428,723 (+)	NCBI

Sequence:

show sequence

TGCGCGGTGGGCGTGATCCGGGCACTTAGGGCAGGATGAACGCTGCTTTCCAAGATGGCGACGG
AGGGAGGAGGGAAGGAGATGAACGAGATTAAGACCCAATTCACCACCCGGGAAGGTCTGTACAA
GCTGCTACCACACTCGGAGTACAGCCGGCCCAACCGGGTGCCCTTCAACTCGCAGGGATCCAAC
CCTGTCCGCGTCTCCTTCGTCAACCTCAACGACCAGTCTGGCAACGGCGACCGCCTCTGCTTCA
ATGTGGGCCGGGAGCTCTACTTCTATATCTACAAGGGGGTCCGCAAGGCTGCTGACTTGAGTAA
ACCAATAGATAAAAGGATATACAAAGGAACACAGCCTACTTGTCATGACTTCAACCACCTAACA
GCCACAGCAGAAAGTGTCTCTCTCCTAGTGGGCTTTTCCGCAGGCCAAGTCCAGCTTATAGACC
CAATCAAAAAAGAAACTAGCAAACTATTTAATGAGGAAGGCTTATTGTCATCCCCAAACCAGGC
CAGTTCTCCAGGTGGAACTGTAGTGTAGCGACCCCACTGCGCTCAGACTCCCCGACGCGCGGGA
CTGCAGGGACCGAGGATGACGACGGAGAGCCGCGCTGGAGCCACGCCAGGGTGGCAGGCCTCAG
GCAGGCAGGCAGACATCCCGAGGGCCGTGCAGACCCGTGATGTGGTGCCGTGCTGCGCACTCTG
CTGCCCGCCCAAAGAAGTTTCCATTTGAAGTCGGTCTGTTGGGGCTGCAGTAAAAATAAGAAAT
GGTGTTTTCTTGTTTTTTACTCTAAAACTCGATGTAATGAAATCTCACACATATATAATATATA
CATATATACATAGTGTAAATAAAGTGCTTCTTGGACAGAGACCTCCTTGATTCAGCTGTTACGA
GTAGTACTTCCCTCACTGGTTTTGCACTGGTTTTTTATACTTTGGGTGGTCAGAAGACAACCTA
GAATGCACTCAAACAGAAAGGGTTTACTTTCTGACTTAAATGTGTAATTCAGGAAGGTGTATGC
GTCAGTCTTACATGTTGAAATATTGTTTGCACTTCAATAGTTTAATGCTAATAGAAAATGGCTC
TGAGTGTGGTGGATCCCTGGCCCCTCACGGTGTGAAGGGAAGACATCCTTTTTTATCTGTTAAT
GTTTATTTTAATACTGTTGTTTCTAATGCAATCAACTCTGTATAATGTGTATATATAATGTAAT
TCTGCAACTGGGGGAAATAGCTACTTCACTAGTACTTTTCATCATTTAAGAGTGATATTTCTAA
TTTACAAGAAACATTAATATTAAAATTATCTTGAATATA

hide sequence

RefSeq Acc Id:

XM_013365555 ⟹ XP_013221009

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,780,090 - 3,840,596 (-)	NCBI
SpeTri2.0	NW_004936835	355,318 - 415,820 (+)	NCBI

Sequence:

show sequence

TGCGCGGTGGGCGTGATCCGGGCACTTAGGGCAGGATGAACGCTGCTTTCCAAGATGGCGACGG
AGGGAGGAGGGAAGGAGATGAACGAGATTAAGACCCAATTCACCACCCGGGAAGGTCTGTACAA
GCTGCTACCACACTCGGAGTACAGCCGGCCCAACCGGGTGCCCTTCAACTCGCAGGGATCCAAC
CCTGTCCGCGTCTCCTTCGTCAACCTCAACGACCAGTCTGGCAACGGCGACCGCCTCTGCTTCA
ATGTGGGCCGGGAGCTCTACTTCTATATCTACAAGGGGGTCCGCAAGGCTGCTGACTTGAGTAA
ACCAATAGATAAAAGGATATACAAAGGAACACAGCCTACTTGTCATGACTTCAACCACCTAACA
GCCACAGCAGAAAGTGTCTCTCTCCTAGTGGGCTTTTCCGCAGGCCAAGTCCAGCTTATAGACC
CAATCAAAAAAGAAACTAGCAAACTATTTAATGAGGAAGCACGACTACTGATTCATGCCTGTTA
AAGAAGCGACTAGGTCAGTGGACCAGAAGTGAGCGTGGAGTTGAGTGATAGTGACGGAGCACAG
ACTCCTGAGTTGACCATCTAGGTATTTCTTTAAACACCACCTCGTTCCAAAGAGGACTCTGAGG
AAATGCATATAAAAGATGACACACGGGCAGCGTGTGCAAGTGGGGCGGCCTCAGTGGGCCCGGC
GCTGCATTGCGCCCAGCAAGTGTGCTTTCAAGTCCTGTGTGCTGCTGGCAGCGGGCTGCAGATT
TGACTCCCCGCCTTCAAGCAGCCGCAGCAGAGGGTCACATGTAGTCAGCACGTGGCCTGCAGTA
ACAGGAAATGCAGAGAAAGCCGGGAGGCATGGCTTTCTCAGCTATGAGTCCTCACGAGAGGGAG
CTGCGTGTAGCTGCTGAGTCACAGGTTGACATGCTCCTGCTGGACGTGAGGAGGTATCCGAGGG
CTGCCTCTCACCCATGTGCCCAGTGCCTGGCCTGGGGTCTGGCACAGAGTAGGCTCTCAGCAGA
TATTTGTTGAATGGCTGACTCCCTCAGTGAAAGCCAGTGGCCACCACCCAAGTGCAATTCTAGA
AAGTAGCTCTGCAATGGGCCAGTGATCTCGCTGGCTGGCTGACCACGGGATAAGTGTGGCGTGC
CTGGATGGACTCCTTCCTTCTCACCGAGAAGCAACAAGTTTTCTTGCTGGAAAAGTAGACCTTT
GCACCTTCTCCCTTGTGATAACCTGTTCTCCTTTGTC

hide sequence

RefSeq Acc Id:

XM_013365556 ⟹ XP_013221010

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,187 - 3,840,600 (-)	NCBI
SpeTri2.0	NW_004936835	355,318 - 428,723 (+)	NCBI

Sequence:

show sequence

TGCGCGGTGGGCGTGATCCGGGCACTTAGGGCAGGATGAACGCTGCTTTCCAAGATGGCGACGG
AGGGAGGAGGGAAGGAGATGAACGAGATTAAGACCCAATTCACCACCCGGGAAGGTCTGTACAA
GCTGCTACCACACTCGGAGTACAGCCGGCCCAACCGGGTGCCCTTCAACTCGCAGGGATCCAAC
CCTGTCCGCGTCTCCTTCGTCAACCTCAACGACCAGTCTGGCAACGGCGACCGCCTCTGCTTCA
ATGTGGGCCGGGAGCTCTACTTCTATATCTACAAGGGGGTCCGCAAGGGCTTATTGTCATCCCC
AAACCAGGCCAGTTCTCCAGGTGGAACTGTAGTGTAGCGACCCCACTGCGCTCAGACTCCCCGA
CGCGCGGGACTGCAGGGACCGAGGATGACGACGGAGAGCCGCGCTGGAGCCACGCCAGGGTGGC
AGGCCTCAGGCAGGCAGGCAGACATCCCGAGGGCCGTGCAGACCCGTGATGTGGTGCCGTGCTG
CGCACTCTGCTGCCCGCCCAAAGAAGTTTCCATTTGAAGTCGGTCTGTTGGGGCTGCAGTAAAA
ATAAGAAATGGTGTTTTCTTGTTTTTTACTCTAAAACTCGATGTAATGAAATCTCACACATATA
TAATATATACATATATACATAGTGTAAATAAAGTGCTTCTTGGACAGAGACCTCCTTGATTCAG
CTGTTACGAGTAGTACTTCCCTCACTGGTTTTGCACTGGTTTTTTATACTTTGGGTGGTCAGAA
GACAACCTAGAATGCACTCAAACAGAAAGGGTTTACTTTCTGACTTAAATGTGTAATTCAGGAA
GGTGTATGCGTCAGTCTTACATGTTGAAATATTGTTTGCACTTCAATAGTTTAATGCTAATAGA
AAATGGCTCTGAGTGTGGTGGATCCCTGGCCCCTCACGGTGTGAAGGGAAGACATCCTTTTTTA
TCTGTTAATGTTTATTTTAATACTGTTGTTTCTAATGCAATCAACTCTGTATAATGTGTATATA
TAATGTAATTCTGCAACTGGGGGAAATAGCTACTTCACTAGTACTTTTCATCATTTAAGAGTGA
TATTTCTAATTTACAAGAAACATTAATATTAAAATTATCTTGAATATA

hide sequence

RefSeq Acc Id:

XM_040275057 ⟹ XP_040130991

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,187 - 3,795,637 (-)	NCBI

RefSeq Acc Id:

XM_040275058 ⟹ XP_040130992

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,187 - 3,840,594 (-)	NCBI

RefSeq Acc Id:

XM_040275059 ⟹ XP_040130993

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,188 - 3,861,060 (-)	NCBI

RefSeq Acc Id:

XM_040275060 ⟹ XP_040130994

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,188 - 3,861,060 (-)	NCBI

RefSeq Acc Id:

XM_040275062 ⟹ XP_040130996

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,188 - 3,860,951 (-)	NCBI

RefSeq Acc Id:

XM_040275063 ⟹ XP_040130997

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,187 - 3,840,566 (-)	NCBI

RefSeq Acc Id:

XM_040275064 ⟹ XP_040130998

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	3,767,188 - 3,840,856 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005341053	(Get FASTA)	NCBI Sequence Viewer
	XP_005341057	(Get FASTA)	NCBI Sequence Viewer
	XP_013221009	(Get FASTA)	NCBI Sequence Viewer
	XP_013221010	(Get FASTA)	NCBI Sequence Viewer
	XP_040130991	(Get FASTA)	NCBI Sequence Viewer
	XP_040130992	(Get FASTA)	NCBI Sequence Viewer
	XP_040130993	(Get FASTA)	NCBI Sequence Viewer
	XP_040130994	(Get FASTA)	NCBI Sequence Viewer
	XP_040130996	(Get FASTA)	NCBI Sequence Viewer
	XP_040130997	(Get FASTA)	NCBI Sequence Viewer
	XP_040130998	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000005841.3
	ENSSTOP00000024441.1
GenBank Protein	KAG3260324	(Get FASTA)	NCBI Sequence Viewer
	KAG3260325	(Get FASTA)	NCBI Sequence Viewer
	KAG3260326	(Get FASTA)	NCBI Sequence Viewer
	KAG3260327	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005341053 ⟸ XM_005340996
- Peptide Label:	isoform X1
- UniProtKB:	I3M838 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATEGGGKEMNEIKTQFTTREGLYKLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQSGNGDR LCFNVGRELYFYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQ LIDPIKKETSKLFNEERLIDKARVTCVKWVPGSESLFLVAHSSGNMYLYNVEHTCGTTAPHYQL LKQGESFAVHTCKSKSTRNPLLKWTVGEGALSEFAFSPDGKFLACVSQDGFLRVFNFDSVELHG TMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVE ESDPMEFSGSDEDFQDLLHFGRDRANSTQSRLSKRNSTDSRPVSVTYRFGSVGQDTQLCLWDLT EDILFPHQPLSRARTHTNVMNATSPPAGSNGNSVTTPGNSVPPPLPRSNSLPHSAVSNAGSKSS VMDGAIASGVSKFATLSLHDRKERHHEKDHKRNHSMGHISSKSSDKLNLVTKTKTDPAKTLGTP LCPRMEDVPLLEPLICKKIAHERLTVLIFLEDCIVTACQEGFICTWGRPGKVGLLSSPNQASSP GGTVV hide sequence

RefSeq Acc Id:	XP_005341057 ⟸ XM_005341000
- Peptide Label:	isoform X5
- UniProtKB:	A0A287CT22 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATEGGGKEMNEIKTQFTTREGLYKLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQSGNGDR LCFNVGRELYFYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQ LIDPIKKETSKLFNEEGLLSSPNQASSPGGTVV hide sequence

RefSeq Acc Id:	XP_013221010 ⟸ XM_013365556
- Peptide Label:	isoform X7
- Sequence:	show sequence MATEGGGKEMNEIKTQFTTREGLYKLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQSGNGDR LCFNVGRELYFYIYKGVRKGLLSSPNQASSPGGTVV hide sequence

RefSeq Acc Id:	XP_013221009 ⟸ XM_013365555
- Peptide Label:	isoform X6
- Sequence:	show sequence MATEGGGKEMNEIKTQFTTREGLYKLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQSGNGDR LCFNVGRELYFYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQ LIDPIKKETSKLFNEEARLLIHAC hide sequence

RefSeq Acc Id:	XP_040130992 ⟸ XM_040275058
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040130997 ⟸ XM_040275063
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040130991 ⟸ XM_040275057
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040130994 ⟸ XM_040275060
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040130993 ⟸ XM_040275059
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040130996 ⟸ XM_040275062
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040130998 ⟸ XM_040275064
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSSTOP00000005841 ⟸ ENSSTOT00000006532

RefSeq Acc Id:

ENSSTOP00000024441 ⟸ ENSSTOT00000033625

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000006544	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000006532.3	UniProtKB/TrEMBL
	ENSSTOT00000033625.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Wdr20	ENTREZGENE
PANTHER	WD REPEAT PROTEIN	UniProtKB/TrEMBL
	WD REPEAT-CONTAINING PROTEIN 20	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	A0A287CT22	ENTREZGENE, UniProtKB/TrEMBL
	I3M838	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD