Tspan9 (tetraspanin 9) - Rat Genome Database

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Gene: Tspan9 (tetraspanin 9) Rattus norvegicus
Analyze
Symbol: Tspan9
Name: tetraspanin 9
RGD ID: 1304740
Description: Predicted to act upstream of or within several processes, including collagen-activated tyrosine kinase receptor signaling pathway; mitocytosis; and platelet aggregation. Predicted to be located in migrasome and tetraspanin-enriched microdomain. Predicted to be active in plasma membrane. Orthologous to human TSPAN9 (tetraspanin 9); INTERACTS WITH 1,2-dimethylhydrazine; 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC312728; RGD1304740; similar to Tetraspan NET-5; tetraspanin-9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84162,500,029 - 162,681,699 (-)NCBIGRCr8
mRatBN7.24160,813,879 - 160,995,574 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4160,813,879 - 160,995,501 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4167,043,850 - 167,118,214 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04162,826,769 - 162,901,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04161,460,829 - 161,535,196 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04160,530,726 - 160,725,056 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4160,530,720 - 160,662,974 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04230,893,933 - 231,085,237 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44164,416,321 - 164,490,755 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14164,662,142 - 164,735,595 (-)NCBI
Celera4149,521,883 - 149,596,105 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18795891   PMID:18799160   PMID:21423176  


Genomics

Comparative Map Data
Tspan9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84162,500,029 - 162,681,699 (-)NCBIGRCr8
mRatBN7.24160,813,879 - 160,995,574 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4160,813,879 - 160,995,501 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4167,043,850 - 167,118,214 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04162,826,769 - 162,901,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04161,460,829 - 161,535,196 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04160,530,726 - 160,725,056 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4160,530,720 - 160,662,974 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04230,893,933 - 231,085,237 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44164,416,321 - 164,490,755 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14164,662,142 - 164,735,595 (-)NCBI
Celera4149,521,883 - 149,596,105 (-)NCBICelera
Cytogenetic Map4q42NCBI
TSPAN9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38123,077,379 - 3,286,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl123,077,355 - 3,286,564 (+)EnsemblGRCh38hg38GRCh38
GRCh37123,186,545 - 3,395,725 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36123,056,818 - 3,265,991 (+)NCBINCBI36Build 36hg18NCBI36
Celera124,800,573 - 5,009,494 (+)NCBICelera
Cytogenetic Map12p13.33-p13.32NCBI
HuRef123,043,244 - 3,251,902 (+)NCBIHuRef
CHM1_1123,185,640 - 3,394,816 (+)NCBICHM1_1
T2T-CHM13v2.0123,083,510 - 3,293,033 (+)NCBIT2T-CHM13v2.0
Tspan9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396127,938,359 - 128,120,541 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6127,938,359 - 128,120,557 (-)EnsemblGRCm39 Ensembl
GRCm386127,961,396 - 128,143,578 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6127,961,396 - 128,143,594 (-)EnsemblGRCm38mm10GRCm38
MGSCv376127,911,418 - 128,093,596 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366127,927,019 - 128,109,197 (-)NCBIMGSCv36mm8
Celera6129,634,256 - 129,815,522 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map662.73NCBI
Tspan9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542918,696,528 - 18,772,593 (+)NCBIChiLan1.0ChiLan1.0
TSPAN9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2108,608,855 - 8,840,601 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1128,607,257 - 8,837,357 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0123,190,897 - 3,410,042 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1123,135,211 - 3,334,244 (+)NCBIpanpan1.1PanPan1.1panPan2
TSPAN9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12741,526,757 - 41,684,909 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2741,529,151 - 41,611,686 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,956,399 - 5,155,923 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02741,884,395 - 42,084,481 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2741,884,402 - 42,084,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12741,821,703 - 42,021,388 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02741,796,674 - 41,996,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,316,539 - 4,516,244 (+)NCBIUU_Cfam_GSD_1.0
Tspan9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945105,594,518 - 105,785,420 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366063,506,357 - 3,586,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366063,398,745 - 3,589,647 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl566,913,769 - 67,106,233 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1566,913,750 - 67,106,303 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,219,141 - 69,394,409 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103218397
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,138,764 - 3,347,796 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,145,015 - 3,347,849 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660634,948,875 - 5,159,692 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624860493,668 - 575,138 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624860392,163 - 575,138 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tspan9
855 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:422
Count of miRNA genes:221
Interacting mature miRNAs:286
Transcripts:ENSRNOT00000007328
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat

Markers in Region
RH127368  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24160,814,060 - 160,814,256 (+)MAPPERmRatBN7.2
Rnor_6.04160,530,908 - 160,531,103NCBIRnor6.0
Rnor_5.04231,084,860 - 231,085,055UniSTSRnor5.0
RGSC_v3.44164,416,503 - 164,416,698UniSTSRGSC3.4
Celera4149,522,065 - 149,522,260UniSTS
RH 3.4 Map41013.11UniSTS
Cytogenetic Map4q42UniSTS
RH140309  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24160,816,683 - 160,816,866 (+)MAPPERmRatBN7.2
Rnor_6.04160,533,531 - 160,533,713NCBIRnor6.0
Rnor_5.04231,082,250 - 231,082,432UniSTSRnor5.0
RGSC_v3.44164,419,126 - 164,419,308UniSTSRGSC3.4
Celera4149,524,688 - 149,524,870UniSTS
RH 3.4 Map41011.2UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000089199   ⟹   ENSRNOP00000070476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4160,813,882 - 160,995,501 (-)Ensembl
Rnor_6.0 Ensembl4160,530,720 - 160,662,974 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090725   ⟹   ENSRNOP00000075377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4160,813,879 - 160,888,066 (-)Ensembl
Rnor_6.0 Ensembl4160,530,726 - 160,605,107 (-)Ensembl
RefSeq Acc Id: NM_001107890   ⟹   NP_001101360
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,029 - 162,574,208 (-)NCBI
mRatBN7.24160,813,879 - 160,888,066 (-)NCBI
Rnor_6.04160,530,726 - 160,605,107 (-)NCBI
Rnor_5.04230,893,933 - 231,085,237 (+)NCBI
RGSC_v3.44164,416,321 - 164,490,755 (-)RGD
Celera4149,521,883 - 149,596,105 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237494   ⟹   XP_006237556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,681,698 (-)NCBI
mRatBN7.24160,813,881 - 160,995,574 (-)NCBI
Rnor_6.04160,530,728 - 160,725,056 (-)NCBI
Rnor_5.04230,893,933 - 231,085,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006237495   ⟹   XP_006237557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,681,698 (-)NCBI
mRatBN7.24160,813,881 - 160,995,574 (-)NCBI
Rnor_6.04160,530,728 - 160,725,056 (-)NCBI
Rnor_5.04230,893,933 - 231,085,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006237496   ⟹   XP_006237558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,681,685 (-)NCBI
mRatBN7.24160,813,881 - 160,995,556 (-)NCBI
Rnor_6.04160,530,728 - 160,725,038 (-)NCBI
Rnor_5.04230,893,933 - 231,085,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006237498   ⟹   XP_006237560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,681,699 (-)NCBI
mRatBN7.24160,813,881 - 160,995,572 (-)NCBI
Rnor_6.04160,530,728 - 160,725,039 (-)NCBI
Rnor_5.04230,893,933 - 231,085,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592655   ⟹   XP_017448144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,663,598 (-)NCBI
mRatBN7.24160,813,881 - 160,977,494 (-)NCBI
Rnor_6.04160,530,728 - 160,707,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592656   ⟹   XP_017448145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,663,598 (-)NCBI
mRatBN7.24160,813,881 - 160,977,494 (-)NCBI
Rnor_6.04160,530,728 - 160,707,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107691   ⟹   XP_038963619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,681,698 (-)NCBI
mRatBN7.24160,813,881 - 160,995,574 (-)NCBI
RefSeq Acc Id: XM_063286148   ⟹   XP_063142218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,615,512 (-)NCBI
RefSeq Acc Id: XM_063286149   ⟹   XP_063142219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,681,698 (-)NCBI
RefSeq Acc Id: XM_063286150   ⟹   XP_063142220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84162,500,032 - 162,681,691 (-)NCBI
RefSeq Acc Id: NP_001101360   ⟸   NM_001107890
- UniProtKB: D4AAV9 (UniProtKB/TrEMBL),   A6ILZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237556   ⟸   XM_006237494
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JY11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237557   ⟸   XM_006237495
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JY11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237558   ⟸   XM_006237496
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JY11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237560   ⟸   XM_006237498
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JY11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448145   ⟸   XM_017592656
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JY11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448144   ⟸   XM_017592655
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JY11 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070476   ⟸   ENSRNOT00000089199
Ensembl Acc Id: ENSRNOP00000075377   ⟸   ENSRNOT00000090725
RefSeq Acc Id: XP_038963619   ⟸   XM_039107691
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142219   ⟸   XM_063286149
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142220   ⟸   XM_063286150
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142218   ⟸   XM_063286148
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JY11 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAV9-F1-model_v2 AlphaFold D4AAV9 1-330 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304740 AgrOrtholog
BioCyc Gene G2FUF-42920 BioCyc
Ensembl Genes ENSRNOG00000051620 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089199.2 UniProtKB/TrEMBL
  ENSRNOT00000090725.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/TrEMBL
  Tetraspanin_EC2 UniProtKB/TrEMBL
  Tetraspanin_sub UniProtKB/TrEMBL
KEGG Report rno:312728 UniProtKB/TrEMBL
NCBI Gene 312728 ENTREZGENE
PANTHER PTHR19282 UniProtKB/TrEMBL
  TETRASPANIN-9 UniProtKB/TrEMBL
Pfam Tetraspannin UniProtKB/TrEMBL
PhenoGen Tspan9 PhenoGen
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  TM4_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000051620 RatGTEx
Superfamily-SCOP Tetraspanin UniProtKB/TrEMBL
UniProt A0A0G2JY11 ENTREZGENE, UniProtKB/TrEMBL
  A6ILZ1 ENTREZGENE, UniProtKB/TrEMBL
  D4AAV9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Tspan9  tetraspanin 9   Tspan9_predicted  tetraspanin 9 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Tspan9_predicted  tetraspanin 9 (predicted)  RGD1304740_predicted  similar to Tetraspan NET-5 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1304740_predicted  similar to Tetraspan NET-5 (predicted)  LOC312728_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC312728_predicted  similar to Tetraspan NET-5 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL