TSPAN9 (tetraspanin 9) - Rat Genome Database

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Gene: TSPAN9 (tetraspanin 9) Sus scrofa
Analyze
Symbol: TSPAN9
Name: tetraspanin 9
RGD ID: 14240773
Description: INVOLVED IN collagen-activated tyrosine kinase receptor signaling pathway (ortholog); mitocytosis (ortholog); neutrophil homeostasis (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN migrasome (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: tetraspanin-9; TNE5; Tspan-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl566,913,769 - 67,106,233 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1566,913,750 - 67,106,303 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,219,141 - 69,394,409 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TSPAN9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl566,913,769 - 67,106,233 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1566,913,750 - 67,106,303 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,219,141 - 69,394,409 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38123,077,379 - 3,286,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl123,077,355 - 3,286,564 (+)EnsemblGRCh38hg38GRCh38
GRCh37123,186,545 - 3,395,725 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36123,056,818 - 3,265,991 (+)NCBINCBI36Build 36hg18NCBI36
Celera124,800,573 - 5,009,494 (+)NCBICelera
Cytogenetic Map12p13.33-p13.32NCBI
HuRef123,043,244 - 3,251,902 (+)NCBIHuRef
CHM1_1123,185,640 - 3,394,816 (+)NCBICHM1_1
T2T-CHM13v2.0123,083,510 - 3,293,033 (+)NCBIT2T-CHM13v2.0
Tspan9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396127,938,359 - 128,120,541 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6127,938,359 - 128,120,557 (-)EnsemblGRCm39 Ensembl
GRCm386127,961,396 - 128,143,578 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6127,961,396 - 128,143,594 (-)EnsemblGRCm38mm10GRCm38
MGSCv376127,911,418 - 128,093,596 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366127,927,019 - 128,109,197 (-)NCBIMGSCv36mm8
Celera6129,634,256 - 129,815,522 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map662.73NCBI
Tspan9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84162,500,029 - 162,681,699 (-)NCBIGRCr8
mRatBN7.24160,813,879 - 160,995,574 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4160,813,879 - 160,995,501 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4167,043,850 - 167,118,214 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04162,826,769 - 162,901,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04161,460,829 - 161,535,196 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04160,530,726 - 160,725,056 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4160,530,720 - 160,662,974 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04230,893,933 - 231,085,237 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44164,416,321 - 164,490,755 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14164,662,142 - 164,735,595 (-)NCBI
Celera4149,521,883 - 149,596,105 (-)NCBICelera
Cytogenetic Map4q42NCBI
Tspan9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542918,696,528 - 18,772,593 (+)NCBIChiLan1.0ChiLan1.0
TSPAN9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2108,608,855 - 8,840,601 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1128,607,257 - 8,837,357 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0123,190,897 - 3,410,042 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1123,135,211 - 3,334,244 (+)NCBIpanpan1.1PanPan1.1panPan2
TSPAN9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12741,526,757 - 41,684,909 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2741,529,151 - 41,611,686 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,956,399 - 5,155,923 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02741,884,395 - 42,084,481 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2741,884,402 - 42,084,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12741,821,703 - 42,021,388 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02741,796,674 - 41,996,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,316,539 - 4,516,244 (+)NCBIUU_Cfam_GSD_1.0
Tspan9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945105,594,518 - 105,785,420 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366063,506,357 - 3,586,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366063,398,745 - 3,589,647 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103218397
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,138,764 - 3,347,796 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,145,015 - 3,347,849 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660634,948,875 - 5,159,692 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624860493,668 - 575,138 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624860392,163 - 575,138 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TSPAN9
6614 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2
Low 9 4 3 5 2 21 3 1
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000000798   ⟹   ENSSSCP00000000782
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl566,913,769 - 67,106,233 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063353   ⟹   ENSSSCP00000050362
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl566,913,769 - 66,995,223 (-)Ensembl
RefSeq Acc Id: NM_001077226   ⟹   NP_001070694
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1566,916,981 - 66,994,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005664070   ⟹   XP_005664127
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1566,913,750 - 67,106,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997827   ⟹   XP_013853281
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1566,913,750 - 67,071,319 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005664127   ⟸   XM_005664070
- Peptide Label: isoform X1
- UniProtKB: Q06AA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_013853281   ⟸   XM_013997827
- Peptide Label: isoform X1
- UniProtKB: Q06AA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001070694   ⟸   NM_001077226
- UniProtKB: Q06AA5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000000782   ⟸   ENSSSCT00000000798
RefSeq Acc Id: ENSSSCP00000050362   ⟸   ENSSSCT00000063353


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000735 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005046147 UniProtKB/TrEMBL
  ENSSSCG00015045122 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025006547 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030005625 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035012623 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040023030 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045027673 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050072191 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055014115 UniProtKB/Swiss-Prot
  ENSSSCG00060069845 UniProtKB/Swiss-Prot
  ENSSSCG00065025113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070018158 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000798 ENTREZGENE
  ENSSSCT00000000798.4 UniProtKB/Swiss-Prot
  ENSSSCT00000063353.3 UniProtKB/TrEMBL
  ENSSSCT00005074772.1 UniProtKB/TrEMBL
  ENSSSCT00015060317.1 UniProtKB/Swiss-Prot
  ENSSSCT00015060465.1 UniProtKB/TrEMBL
  ENSSSCT00025008655.1 UniProtKB/Swiss-Prot
  ENSSSCT00025008667.1 UniProtKB/TrEMBL
  ENSSSCT00030007670.1 UniProtKB/Swiss-Prot
  ENSSSCT00030007677.1 UniProtKB/TrEMBL
  ENSSSCT00035015922.1 UniProtKB/Swiss-Prot
  ENSSSCT00035015926.1 UniProtKB/TrEMBL
  ENSSSCT00040030886.1 UniProtKB/Swiss-Prot
  ENSSSCT00040030931.1 UniProtKB/TrEMBL
  ENSSSCT00045047266.1 UniProtKB/Swiss-Prot
  ENSSSCT00045047358.1 UniProtKB/TrEMBL
  ENSSSCT00050098528.1 UniProtKB/Swiss-Prot
  ENSSSCT00050098545.1 UniProtKB/TrEMBL
  ENSSSCT00055028000.1 UniProtKB/Swiss-Prot
  ENSSSCT00060095493.1 UniProtKB/Swiss-Prot
  ENSSSCT00065033603.1 UniProtKB/Swiss-Prot
  ENSSSCT00065033610.1 UniProtKB/TrEMBL
  ENSSSCT00070035875.1 UniProtKB/TrEMBL
  ENSSSCT00070035892.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/Swiss-Prot
  Tetraspanin/Peripherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:768114 UniProtKB/Swiss-Prot
NCBI Gene TSPAN9 ENTREZGENE
PANTHER PTHR19282 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TETRASPANIN-9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/Swiss-Prot
PRINTS TMFOUR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  TM4_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287A2T4_PIG UniProtKB/TrEMBL
  A0A4X1UMT1_PIG UniProtKB/TrEMBL
  A0A8D1Y3F3_PIG UniProtKB/TrEMBL
  Q06AA5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A4X1UJ10 UniProtKB/TrEMBL
VGNC ID VGNC:94516 ENTREZGENE