Paip2l1 (polyadenylate-binding protein-interacting protein 2-like 1) - Rat Genome Database

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Gene: Paip2l1 (polyadenylate-binding protein-interacting protein 2-like 1) Rattus norvegicus
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Symbol: Paip2l1
Name: polyadenylate-binding protein-interacting protein 2-like 1
RGD ID: 1304666
Description: INTERACTS WITH bisphenol A; valproic acid
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC293469; Paip2; polyadenylate-binding protein-interacting protein 2
Related Functional Gene: Paip2  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81188,508,598 - 188,510,083 (+)NCBIGRCr8
mRatBN7.21179,077,576 - 179,079,040 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01193,699,213 - 193,700,698 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01200,756,031 - 200,757,516 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41183,455,152 - 183,455,526 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11183,597,038 - 183,599,303 (+)NCBI
Celera1176,756,536 - 176,757,889 (+)NCBICelera
Cytogenetic Map1q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Paip2l1Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of PAIP2L1 mRNACTDPMID:25181051
Paip2l1Ratvalproic acid decreases expressionEXP 6480464Valproic Acid results in decreased expression of PAIP2L1 mRNACTDPMID:35594946


#
Reference Title
Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:21873635  



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Variants in Paip2l1
9 total Variants

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:77
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000071314
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
61326Eae6Experimental allergic encephalomyelitis QTL 65.3body mass (VT:0001259)change in body weight (CMO:0002045)1172949660181830018Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat

1 to 10 of 84 rows
RH133364  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,077,849 - 179,078,028 (-)MAPPERmRatBN7.2
Rnor_6.01193,700,246 - 193,700,424NCBIRnor6.0
Rnor_5.01200,757,064 - 200,757,242UniSTSRnor5.0
RGSC_v3.41183,455,401 - 183,455,579UniSTSRGSC3.4
Celera1176,756,810 - 176,756,988UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map1q36UniSTS
D5S2301E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,077,600 - 179,077,712 (-)MAPPERmRatBN7.2
mRatBN7.21827,212,433 - 27,212,545 (+)MAPPERmRatBN7.2
Rnor_6.01828,409,986 - 28,410,097NCBIRnor6.0
Rnor_6.01193,700,562 - 193,700,673NCBIRnor6.0
Rnor_5.01828,123,096 - 28,123,207UniSTSRnor5.0
Rnor_5.01200,757,380 - 200,757,491UniSTSRnor5.0
RGSC_v3.41183,455,152 - 183,455,263UniSTSRGSC3.4
RGSC_v3.41828,234,931 - 28,235,042UniSTSRGSC3.4
Celera1826,945,982 - 26,946,093UniSTS
Celera1176,756,561 - 176,756,672UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map1q36UniSTS







RefSeq Acc Id: XM_001079699   ⟹   XP_001079699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1176,756,561 - 176,756,935 (+)RGD
RefSeq Acc Id: XM_215046   ⟹   XP_215046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01200,757,117 - 200,757,491 (-)NCBI
RGSC_v3.41183,455,152 - 183,455,526 (+)RGD


Database
Acc Id
Source(s)
BioCyc Gene G2FUF-57509 BioCyc
NCBI Gene 293469 ENTREZGENE
PhenoGen Paip2l1 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-29 Paip2l1  polyadenylate-binding protein-interacting protein 2-like 1  Paip2_predicted  polyadenylate-binding protein-interacting protein 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Paip2_predicted  polyadenylate-binding protein-interacting protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED