Gckr (glucokinase regulator) - Rat Genome Database

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Pathways
Gene: Gckr (glucokinase regulator) Ictidomys tridecemlineatus
Analyze
Symbol: Gckr
Name: glucokinase regulator
RGD ID: 12667412
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN intracellular glucose homeostasis (ortholog); negative regulation of glucokinase activity (ortholog); protein import into nucleus (ortholog); PARTICIPATES IN glycogen metabolic pathway; ASSOCIATED WITH end stage renal disease (ortholog); Hypertriglyceridemia (ortholog); Metabolic Syndrome (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,735,931 - 65,759,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,080,559 - 5,101,892 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,080,517 - 5,101,892 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
mitochondrion  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gckr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,735,931 - 65,759,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,080,559 - 5,101,892 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,080,517 - 5,101,892 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCKR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,496,839 - 27,523,684 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,496,532 - 27,523,688 (+)Ensemblhg38GRCh38
GRCh37227,719,706 - 27,746,551 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,573,210 - 27,600,055 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34227,631,356 - 27,658,199NCBI
Celera227,565,881 - 27,592,728 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,461,595 - 27,488,434 (+)NCBIHuRef
CHM1_1227,649,617 - 27,676,462 (+)NCBICHM1_1
T2T-CHM13v2.0227,539,204 - 27,566,046 (+)NCBIT2T-CHM13v2.0
Gckr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,454,594 - 31,484,646 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,454,787 - 31,484,658 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38531,297,266 - 31,327,302 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,297,443 - 31,327,314 (+)Ensemblmm10GRCm38
MGSCv37531,599,954 - 31,629,675 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36531,574,162 - 31,603,883 (+)NCBIMGSCv36mm8
Celera528,776,863 - 28,806,281 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.27NCBI
Gckr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,765,071 - 30,795,627 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl630,765,075 - 30,795,627 (-)EnsemblGRCr8
mRatBN7.2625,044,592 - 25,075,834 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,045,100 - 25,075,654 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx625,345,943 - 25,376,501 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,661,829 - 25,692,391 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,141,212 - 25,171,764 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd632,214,087 - 32,244,643 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive631,650,653 - 31,681,209 (-)NCBILyon_Normotensive
Lyon_Hypertensive629,446,478 - 29,477,034 (-)NCBILyon_Hypertensive
F344_StmMcwi628,657,653 - 28,687,939 (-)NCBIF344_StmMcwi
Rnor_6.0626,355,296 - 26,385,761 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,355,296 - 26,385,761 (-)Ensemblrn6Rnor6.0
Rnor_5.0636,175,967 - 36,205,241 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera624,538,242 - 24,568,355 (-)NCBICelera
RH 3.4 Map693.5RGD
Cytogenetic Map6q14NCBI
Gckr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,461,848 - 9,484,707 (+)Ensembl
ChiLan1.0NW_0049554699,461,541 - 9,485,034 (+)NCBIChiLan1.0ChiLan1.0
GCKR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21298,988,257 - 99,016,423 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A98,991,561 - 99,020,392 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,497,938 - 27,530,650 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,587,077 - 27,613,927 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,587,077 - 27,613,927 (+)EnsemblpanPan2panpan1.1
GCKR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,431,113 - 21,460,143 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,434,200 - 21,459,935 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1721,325,464 - 21,351,412 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01721,748,359 - 21,780,870 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,755,097 - 21,780,825 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,441,647 - 21,467,181 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,451,118 - 21,476,635 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,499,397 - 21,525,150 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
GCKR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,649,539 - 111,676,772 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13111,649,557 - 111,683,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,789,323 - 118,823,342 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GCKR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,069,662 - 80,124,038 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,100,436 - 80,123,686 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604532,031,883 - 32,058,078 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gckr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,552,386 - 9,574,082 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247389,552,260 - 9,574,082 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gckr
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1722,752,939 - 22,782,559 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000005050   ⟹   ENSSTOP00000004530
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364935,080,559 - 5,101,892 (-)Ensembl
RefSeq Acc Id: XM_005322514   ⟹   XP_005322571
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,735,931 - 65,759,598 (+)NCBI
SpeTri2.0NW_0049364935,080,517 - 5,101,892 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_077885611 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004530.3
RefSeq Acc Id: XP_005322571   ⟸   XM_005322514
- Sequence:
Ensembl Acc Id: ENSSTOP00000004530   ⟸   ENSSTOT00000005050
Protein Domains
SIS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005043 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00015008461 ENTREZGENE
Ensembl Transcript ENSSTOT00000005050.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.1080 UniProtKB/TrEMBL
  3.40.50.12620 UniProtKB/TrEMBL
  Glucose-6-phosphate isomerase like protein, domain 1 UniProtKB/TrEMBL
InterPro GKRP_SIS_2 UniProtKB/TrEMBL
  Glucokinase_regulatory_CS UniProtKB/TrEMBL
  MURQ/GCKR UniProtKB/TrEMBL
  SIS_dom UniProtKB/TrEMBL
  SIS_dom_sf UniProtKB/TrEMBL
NCBI Gene Gckr ENTREZGENE
PANTHER GLUCOKINASE REGULATORY PROTEIN UniProtKB/TrEMBL
  PTHR10088 UniProtKB/TrEMBL
Pfam GKRP-like_C UniProtKB/TrEMBL
  GKRP_SIS_2 UniProtKB/TrEMBL
  GKRP_SIS_N UniProtKB/TrEMBL
PROSITE GCKR UniProtKB/TrEMBL
  SIS UniProtKB/TrEMBL
Superfamily-SCOP SSF53697 UniProtKB/TrEMBL
UniProt I3M5D5_ICTTR UniProtKB/TrEMBL