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Gene: Sim1 (SIM bHLH transcription factor 1) Ictidomys tridecemlineatus

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Symbol:

Sim1

Name:

SIM bHLH transcription factor 1

RGD ID:

12507677

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); diabetes mellitus (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

single-minded family bHLH transcription factor 1; single-minded homolog 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	93,381,896 - 93,456,539 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936651	1,841,054 - 1,911,944 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936651	1,841,040 - 1,911,944 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

diabetes mellitus (ISO)

genetic disease (ISO)

hyperglycemia (ISO)

microcephaly (ISO)

Moebius syndrome (ISO)

obesity (ISO)

Schaaf-Yang syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

DNA-templated transcription (IEA)

nervous system development (IEA)

regulation of DNA-templated transcription (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA)

system development (IEA)

tube development (IEA)

ureteric bud development (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

protein dimerization activity (IEA)

protein heterodimerization activity (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Sim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	93,381,896 - 93,456,539 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936651	1,841,054 - 1,911,944 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936651	1,841,040 - 1,911,944 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SIM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	100,385,009 - 100,464,921 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	100,385,009 - 100,464,935 (-)	Ensembl			hg38	GRCh38
GRCh37	6	100,832,885 - 100,912,797 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	100,943,471 - 101,018,272 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	100,943,470 - 101,018,272	NCBI
Celera	6	101,480,981 - 101,555,761 (-)	NCBI		Celera
Cytogenetic Map	6	q16.3	NCBI
HuRef	6	98,275,663 - 98,350,456 (-)	NCBI		HuRef
CHM1_1	6	101,098,793 - 101,173,570 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	101,558,767 - 101,638,670 (-)	NCBI		T2T-CHM13v2.0

Sim1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	50,770,794 - 50,865,252 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	50,770,850 - 50,865,248 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	50,894,698 - 50,989,156 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	50,894,754 - 50,989,152 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	50,615,457 - 50,708,958 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	50,584,066 - 50,677,567 (+)	NCBI		MGSCv36	mm8
Celera	10	51,744,683 - 51,838,475 (+)	NCBI		Celera
Cytogenetic Map	10	B3	NCBI
cM Map	10	24.87	NCBI

Sim1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	55,409,814 - 55,489,450 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	55,410,577 - 55,489,449 (+)	Ensembl				GRCr8
mRatBN7.2	20	53,827,601 - 53,907,219 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	53,828,364 - 53,907,212 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	55,543,215 - 55,626,456 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	55,192,931 - 55,276,173 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	55,885,015 - 55,963,896 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	20	55,422,706 - 55,501,470 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	20	56,476,680 - 56,555,435 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	20	56,543,738 - 56,622,495 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	20	55,363,851 - 55,442,611 (+)	NCBI		F344_StmMcwi
Rnor_6.0	20	55,590,810 - 55,674,002 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	55,594,676 - 55,673,995 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	57,192,734 - 57,274,564 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	54,908,178 - 54,988,099 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	46,257,466 - 46,336,238 (-)	NCBI		Celera
RGSC_v3.1	20	54,937,202 - 55,012,573 (+)	NCBI
Cytogenetic Map	20	q13	NCBI

Sim1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	26,173,009 - 26,259,752 (-)	Ensembl
ChiLan1.0	NW_004955411	26,173,009 - 26,256,545 (-)	NCBI	ChiLan1.0	ChiLan1.0

SIM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	120,431,444 - 120,506,816 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	118,308,628 - 118,388,705 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	98,221,476 - 98,301,215 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	102,104,462 - 102,181,062 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	102,104,783 - 102,181,062 (-)	Ensembl			panPan2	panpan1.1

SIM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	58,480,744 - 58,552,126 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	58,485,823 - 58,553,192 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	58,239,464 - 58,312,667 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	59,313,324 - 59,386,528 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	59,319,037 - 59,386,575 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	58,666,215 - 58,739,215 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	58,507,210 - 58,580,362 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	58,747,572 - 58,820,839 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

SIM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	67,214,337 - 67,294,397 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	67,213,685 - 67,294,455 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	76,000,269 - 76,071,230 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SIM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	73,451,838 - 73,527,733 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	73,453,800 - 73,527,198 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	45,749,767 - 45,824,784 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sim1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624810	4,479,589 - 4,558,434 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624810	4,479,589 - 4,558,735 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005335883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078019567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000015626 ⟹ ENSSTOP00000013988

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936651	1,841,054 - 1,911,944 (-)	Ensembl

RefSeq Acc Id:

XM_005335883 ⟹ XP_005335940

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	93,381,896 - 93,456,539 (-)	NCBI
SpeTri2.0	NW_004936651	1,841,040 - 1,911,944 (-)	NCBI

Sequence:

show sequence

CCCGTAAGCTGTAAAGAAGTTACTGGGGGGGGGCGCTTTCGGCTTGCAATTAGGAATAATACTG
GCTTTGTAGCAACTACCGAGGAGGAGGATTCTTAAACCACCTCTTCCGTCCCAAAGCCGGCATC
CTCCTACTTCTGTCACGTACCCCTCCCCCAATTCATGATCAAGTGAAAGGAGCCAGGGAATGCT
CTGCACCTCTCTGCTAGTGGGAAGCGGAGAGGCCGGCAGAGTTGTTTAGTTGGACCGTAGGCAT
GAGTACAATTAAGAGGTGGGCGTCTTCGCACCCTTTGCAGCCCTCAAGGACTGAAGTGGTCTGA
AAGAGTTACCTGGGATTCGTGTTCTGCATAAAGGGACTCAGAGTCGCCTCGGATGCGATAGGAC
TGAAGAGCAAACGTCGGGATTATTATGCCGATTTTCCAAGGAACGGGGTTCGCAGCGCTGAATA
GAAGAAAAGGCTGGTACCTCGGTTGTCCCGACAGCATTTGAGACCTAGAAACCTCAGGATTGCC
CAAATTGCCGTGGATCAGCAACTTTCCTATCGTACACTTTTTCAAAGAAAATATTTTCTGTTCT
CTGCGCTGTCCTTTTACTACCAGCACTACACTCCCTGGTGTAGACTTCAGCCTCTTCATTTAAA
GTATGTCTTATGTTTTTGCCAAGTATGATATCTAATTGAAAGTTAATTTTTGGTTTTTGGATGA
ATCTGTGGAGCTCACGTTGTAAAAAGAAAGGGAGAACGAGACACAATGAAAGAGAAGTCCAAAA
ATGCTGCCCGGACTAGGAGGGAGAAGGAAAACAGTGAGTTTTATGAACTGGCTAAATTACTGCC
TTTGCCCTCAGCTATCACCTCGCAGCTGGACAAAGCATCCATAATCAGACTCACGACCAGCTAT
CTCAAAATGAGAGTGGTGTTCCCAGAAGGGCTCGGTGAGGCGTGGGGCCACTCAAGTCGGACCA
GCCCCCTGGACAACGTTGGCCGAGAACTGGGCTCCCATCTACTCCAGACCCTGGATGGCTTCAT
CTTTGTGGTGGCCCCAGATGGGAAGATCATGTACATATCAGAGACAGCCTCAGTTCACCTGGGT
CTTTCTCAGGTAGAGCTGACCGGAAACAGCATTTATGAATACATCCACCCTGCAGACCACGACG
AGATGACCGCAGTGCTCACCGCCCACCAACCCTACCACTCTCACTTTGTACAGGAGTACGAGAT
CGAGCGCTCCTTCTTCCTGAGGATGAAGTGTGTCTTAGCCAAGCGGAATGCTGGCCTCACCTGC
GGCGGCTACAAGGTCATTCACTGCAGTGGCTACCTGAAGATCCGCCAATACAGCTTGGACATGT
CCCCCTTTGACGGCTGTTACCAGAATGTGGGCCTTGTGGCCGTGGGTCACTCGCTGCCTCCTAG
CGCTGTCACGGAGATCAAGCTGCACAGTAACATGTTCATGTTTCGAGCCAGCCTGGACATGAAG
CTCATCTTTCTGGACTCTAGGGTGGCGGAGCTGACGGGGTATGAACCTCAGGACCTGATTGAGA
AGACCTTGTACCACCACGTGCACGGCTGCGACACTTTCCACTTGCGCTGCGCTCACCACCTGCT
GCTGGTGAAGGGGCAGGTGACCACCAAGTACTACAGGTTCCTGGCGAAGCACGGCGGCTGGGTA
TGGGTGCAGAGTTACGCGACCATCGTGCACAACAGCCGCTCGTCCAGGCCACACTGCATTGTCA
GCGTTAACTACGTCCTCACAGACACTGAGTACAAAGGGCTGCAACTCTCCCTAGATCAGATCTC
AGCCTCCAAGCCAGCCTTCTCCTATGCCAGCAGCTCCACCCCCACCATGAATGACAACAGAAAG
GGGGCCAAGTCAAGACTCTCCAGCTCAAAGTCAAAATCCAGGACTTCCCCATATCCTCAGTATT
CGGGATTTCACACCGAAAGATCGGAATCCGACCACGACAGCCAATGGGGCGGCAGTCCCCTGAC
CGACACAGCCTCCCCGCAGCTCCTGGACCCGGACCGGCCCGGCTCGCAGCACGACGCGTCCTGC
GCCTATAGGCAGTTCTCGGACCGCAGCGCTCTCTGCTACGGCTTCGCGCTCGACCACTCCAGGC
TGGTGGAGGAGAGGCATTTCCATACCCAGGCCTGCGAGGGAGGCCGGTGCGAGGCAGGCAGGTA
CTTCCTGGGAACGCCGCAGGCCGGGAGGGAGCCCTGGTGGGGCTCTCGCGCAGCCCTGCCCCTG
ACCAAGGCCTCCCCGGAGAGCAGAGAAGCCTATGAGAACAGCATGCCTCACATCGCCTCGGTCC
ACAGGATCCACGGGCGAGGTCATTGGGATGAAGATAGTGTGGTCAGTTCTCCAGATCCTGGGTC
AGCCAGTGAATCAGGTGATCGATATCGTACTGAACAGTATCAAAGCAGCCCCCACGAACCTAGC
AAAATCGAAACTCTGATAAGAGCCACCCAGCAAATGATTAAAGAAGAAGAGAACAGATTGCAGC
TGCGGAAAGCACCCCCTGACCAATTGGCTTCTATTAATGGAGCTGGGAAAAAACACTCTCTCTG
TTTTGCAAACTATCAACAGCCCCCACCGACAGGCGAAGTTTGTCATGGCTCTGCTCTTTCCAAT
ACTTCACCATGTGACCACCTCCAACAGAGAGAGGGAAAGATGCTGAGCCCCCATGAAAATGACT
ATGACAACAGTCCCACTGCACTGTCTCGGATAAGTAGTCCCAATTCTGATCGCATTTCGAAATC
CAGTTTGATCCTAGCTAAAGACTATCTACATTCGGATATGTCTCCTCATCAGACAGCAGGAGAC
CATCCTGCTGTCTCTCCAAACTGCTTTGGCTCTCACCGCCAGTATTTTGATAAGCATGCGTACA
CATTAACTGGATATGCCTTGGAGCACTTATATGACAGTGAAACCATTAGAAACTATTCCTTGGG
CTGTAATGGCTCACACTTTGATGTAACTTCCCATCTAAGGATGCAGCCCGATCCAGCACAAGGA
CACAAGGGAACATCTGTTATAATAACCAATGGAAGCTGATGTTTTTCTAAAATATTTTTTTCTT
CAAGGGTCTCTGAAGCATATTTATAGTTTAATGCCCCATTATCAGCATTTACTATGCCACAGAT
TGTTAGAGGATAATTTAAGTTACTGGGTATTTGACATGTGTTTCTGCAAAATCAAAGAAAACAT
AGCATTCAGGGTTATACACAGATAATGGAGCTGAAGTCAATACAAAAATTGCCCCTCTAGTTAT
TTGGGAACCAGAATTTTGAATAGAAAAATACTCATGTAAACCAAGTAAGCATACAGACCACATC
AAAGGGCTGATGAATTGACAATACTGTATTGTGATGATCCAGTGAAACTCATAGCCACAGACCA
CCATTCACAAACTGTTGTGTCTACTTTACATGTAGAACTGGAGAATATATACCACAAATATACC
AAAATGGGTACATTCCCTTAACTCTACCACATCAAGCTTCTGAAAGAAATTTTCAATGCCAAAA
TAACCAGAAAGAAAGAGATACATCTTGTAAACTGATTTCTTTGTGGTTTCAAACCAGTCAGCTC
ATTTAGTTTAGGCATAAATTAGAGAAGTGGTTCTGTCTGTAGTGCAAGAATGAGTTTTCACCTG
GTATCCATTAGAAGCAATCAGGAAGTGGTGATTTTTCACCTTGCTTTTGAGTTAGACAAGGACC
AGGATTGCGCTGACATAGCAGTACAGGTTTTTCTAAGTAACAGCATTGAGATGTAGGAAGGCAC
ATCAAAAATGTGGTGTGCTCAATTGGAAGTAGTTTAGTGAAGATGGAAAGGCCAGAGGCCGAGC
AGAATGAAATTATATCTCAAAACAAACAACTTAAGGCTCAGAATAGTTAAACCACATATTTGGG
GCTTGCTTATGAAACCAACCAAATAAAAAATTCAAACCAATTCACCAAGAAAAAAGGCTGATAA
GTGCAAAAATAACTGAGGAAAACCAGTGAAGTGGTACATGACAGCGGTCTAAGTGTTTGAAAGC
ATTTCAAAGCACAGATGTGCCAATGTGTCAGCATGTGGAAAACCTCAGGAGAGAATCTAAGATG
AAAGCTTAGGCAGATAGACAAGTGGTTAAAAGGGCCAGAAAAGTACTCTGACTAAAGGCATAGG
CACAAATACTCATTTTCCTTATTATTTGTAAACAGCAAAAACAATAAACTTGCCTTCACCTCTG
TGTGATGTAGTAGAAAGACTAGTGGACTAGATGCAGAGATCTCTGGGTTTGGGTTCTGAGCCCG
CCTGTAACTTAATTTTGTGACCACAATTGCATTTCTCACCATGTCTGAGGCCTTGTGTCCTGGT
CTGTAAGGCAGTTTCAGTGTCACATGATCCTGTGGTTCATCGAGGCAGCAGAATGGAACTTATG
AAGTAGTTAATTCTCTGCTGTGAGTTTTCAGGACTGATCATTCTGGCTTTTCTGCACACATGCA
GAGGCCTAGAAGCTTTGTGACTTAAGCAGGTATGTGGGCTCTCTGGTGCAGGTATAGTTACAGT
TGGTTTTTTCTTAGA

hide sequence

RefSeq Acc Id:

XM_040283144 ⟹ XP_040139078

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	93,381,896 - 93,456,539 (-)	NCBI

RefSeq Acc Id:

XM_040283145 ⟹ XP_040139079

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	93,381,896 - 93,445,203 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005335940	(Get FASTA)	NCBI Sequence Viewer
	XP_040139078	(Get FASTA)	NCBI Sequence Viewer
	XP_040139079	(Get FASTA)	NCBI Sequence Viewer
	XP_077875693	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000013988.3
	ENSSTOP00015003414
GenBank Protein	KAG3289992	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005335940 ⟸ XM_005335883
- Peptide Label:	isoform X1
- UniProtKB:	I3MQ26 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKEKSKNAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPEGLGEAW GHSSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYI HPADHDEMTAVLTAHQPYHSHFVQEYEIERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIR QYSLDMSPFDGCYQNVGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYE PQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSS RPHCIVSVNYVLTDTEYKGLQLSLDQISASKPAFSYASSSTPTMNDNRKGAKSRLSSSKSKSRT SPYPQYSGFHTERSESDHDSQWGGSPLTDTASPQLLDPDRPGSQHDASCAYRQFSDRSALCYGF ALDHSRLVEERHFHTQACEGGRCEAGRYFLGTPQAGREPWWGSRAALPLTKASPESREAYENSM PHIASVHRIHGRGHWDEDSVVSSPDPGSASESGDRYRTEQYQSSPHEPSKIETLIRATQQMIKE EENRLQLRKAPPDQLASINGAGKKHSLCFANYQQPPPTGEVCHGSALSNTSPCDHLQQREGKML SPHENDYDNSPTALSRISSPNSDRISKSSLILAKDYLHSDMSPHQTAGDHPAVSPNCFGSHRQY FDKHAYTLTGYALEHLYDSETIRNYSLGCNGSHFDVTSHLRMQPDPAQGHKGTSVIITNGS hide sequence

RefSeq Acc Id:	XP_040139078 ⟸ XM_040283144
- Peptide Label:	isoform X1
- UniProtKB:	I3MQ26 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139079 ⟸ XM_040283145
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000013988 ⟸ ENSSTOT00000015626

Protein Domains

bHLH PAS Single-minded C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000015624	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015002816	ENTREZGENE
Ensembl Transcript	ENSSTOT00000015626.3	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
	PAS domain	UniProtKB/TrEMBL
InterPro	bHLH_dom	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS-like_dom_sf	UniProtKB/TrEMBL
	PAS_fold	UniProtKB/TrEMBL
	PAS_fold_3	UniProtKB/TrEMBL
	SIM_C	UniProtKB/TrEMBL
KEGG Report	iti:101960415	UniProtKB/TrEMBL
NCBI Gene	Sim1	ENTREZGENE
PANTHER	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	UniProtKB/TrEMBL
	SINGLE-MINDED HOMOLOG 1	UniProtKB/TrEMBL
Pfam	bHLH_HIF1A	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS_3	UniProtKB/TrEMBL
	SIM_C	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	SIM_C	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
	SSF55785	UniProtKB/TrEMBL
UniProt	I3MQ26	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-04-24	Sim1	SIM bHLH transcription factor 1		single-minded family bHLH transcription factor 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD