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Gene: PTBP2 (polypyrimidine tract binding protein 2) Canis lupus familiaris

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Symbol:

PTBP2

Name:

polypyrimidine tract binding protein 2

RGD ID:

12373403

Description:

ENCODES a protein that exhibits mRNA binding (inferred); nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN cerebellum development (ortholog); mRNA splice site recognition (ortholog); negative regulation of RNA splicing (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN growth cone (ortholog); neuronal cell body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

polypyrimidine tract-binding protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	52,870,944 - 52,948,673 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	52,872,310 - 52,949,025 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	55,556,557 - 55,640,856 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	53,223,659 - 53,275,783 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	53,223,576 - 53,303,282 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	52,917,509 - 52,995,061 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	52,896,678 - 52,974,367 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	53,342,619 - 53,426,749 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cerebellum development (ISO)

mRNA processing (IEA)

mRNA splice site recognition (ISO)

negative regulation of RNA splicing (IEA,ISO)

regulation of neural precursor cell proliferation (ISO)

regulation of RNA splicing (IBA)

RNA splicing (IEA)

spinal cord development (ISO)

Cellular Component

growth cone (ISO)

neuronal cell body (ISO)

nucleus (IBA,IEA)

spliceosomal complex (IEA)

Molecular Function

mRNA binding (IBA,IEA)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PTBP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	52,870,944 - 52,948,673 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	52,872,310 - 52,949,025 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	55,556,557 - 55,640,856 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	53,223,659 - 53,275,783 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	53,223,576 - 53,303,282 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	52,917,509 - 52,995,061 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	52,896,678 - 52,974,367 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	53,342,619 - 53,426,749 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

PTBP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	96,721,784 - 96,823,739 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	96,721,573 - 96,823,738 (+)	Ensembl			hg38	GRCh38
GRCh37	1	97,187,340 - 97,289,295 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	96,959,966 - 97,052,937 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	96,899,398 - 96,992,367	NCBI
Celera	1	95,441,461 - 95,534,886 (+)	NCBI		Celera
Cytogenetic Map	1	p21.3	NCBI
HuRef	1	95,308,506 - 95,401,741 (+)	NCBI		HuRef
CHM1_1	1	97,303,210 - 97,396,589 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	96,569,913 - 96,671,844 (+)	NCBI		T2T-CHM13v2.0

Ptbp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	119,512,390 - 119,578,296 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	119,512,391 - 119,578,115 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	119,718,741 - 119,784,647 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	119,718,742 - 119,784,466 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	119,421,660 - 119,486,306 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	119,710,998 - 119,775,262 (-)	NCBI		MGSCv36	mm8
Celera	3	126,129,123 - 126,191,916 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI
cM Map	3	52.18	NCBI

Ptbp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	210,497,610 - 210,558,497 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	210,497,706 - 210,558,291 (-)	Ensembl				GRCr8
mRatBN7.2	2	207,812,659 - 207,874,019 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	207,812,920 - 207,873,506 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	215,463,900 - 215,523,276 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	213,387,983 - 213,447,341 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	208,213,458 - 208,272,785 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	2	210,231,654 - 210,290,975 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	2	210,450,150 - 210,509,512 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	2	210,067,011 - 210,126,330 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	2	210,131,162 - 210,190,520 (-)	NCBI		F344_StmMcwi
Rnor_6.0	2	223,261,444 - 223,323,075 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	223,262,852 - 223,322,585 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	241,306,857 - 241,368,189 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	216,188,745 - 216,249,176 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	200,269,277 - 200,328,535 (-)	NCBI		Celera
Cytogenetic Map	2	q42	NCBI

Ptbp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	1,702,962 - 1,774,334 (+)	Ensembl
ChiLan1.0	NW_004955435	1,703,588 - 1,773,016 (+)	NCBI	ChiLan1.0	ChiLan1.0

PTBP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	130,211,817 - 130,303,081 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	129,366,565 - 129,457,692 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	99,382,924 - 99,474,053 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	98,105,913 - 98,196,729 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	98,105,913 - 98,196,723 (+)	Ensembl			panPan2	panpan1.1

Ptbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	106,199,552 - 106,271,053 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936537	2,676,130 - 2,747,524 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936537	2,676,920 - 2,748,568 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PTBP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	120,961,381 - 121,041,802 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	120,961,211 - 121,041,876 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	132,800,514 - 132,848,125 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PTBP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	36,465,812 - 36,559,480 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	36,464,689 - 36,559,307 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	81,500,833 - 81,593,658 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ptbp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	783,612 - 855,900 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624742	783,612 - 856,039 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ptbp2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	39,994,896 - 40,056,682 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in PTBP2
627 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005621876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005621877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005621878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_547270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000031985 ⟹ ENSCAFP00000029783

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	52,872,310 - 52,949,025 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000067256 ⟹ ENSCAFP00000048198

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	52,872,573 - 52,949,025 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845025604 ⟹ ENSCAFP00845020168

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	53,223,576 - 53,303,282 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845025625 ⟹ ENSCAFP00845020188

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	53,223,600 - 53,262,869 (-)	Ensembl

RefSeq Acc Id:

XM_005621876 ⟹ XP_005621933

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	52,870,944 - 52,948,673 (-)	NCBI
Dog10K_Boxer_Tasha	6	55,556,557 - 55,640,856 (-)	NCBI

Sequence:

show sequence

TCCGCCGCCGCCGCTGCCGCGCGCTGCCCCGTGCGCTCCGGCACCTTCGGCAATTTCCGTCGGG
CCCCGGCCGCCATTTTCTCGCCGCTTGTGTGTCTCGCTGGCTGCGTGGCTCGGTTCCTGTGAGC
GAAGCTTTGTCCGGTTCGGCAATGGACGGAATTGTCACTGAGGTTGCAGTTGGCGTGAAGAGAG
GATCTGACGAACTACTCTCAGGCAGTGTTCTCAGTAGTCCAAACTCTAATATGAGCAGCATGGT
GGTTACAGCCAATGGTAATGATAGCAAGAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCT
TCTCGTGTACTTCATATTCGAAAATTACCTGGTGAAGTGACAGAAACAGAAGTTATTGCTTTAG
GCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAGGAAAAAATCAGGCATTTTTGGA
ACTAGCAACAGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTGACACCTCATCTC
CGTAACCAACCAATTTATATCCAGTACTCCAATCACAAAGAACTAAAAACAGATAATACGTTAA
ACCAACGTGCTCAAGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAG
TGGCACCACAGTTAGTGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTGCTTAGAATAATTATT
GACAATATGTACTACCCTGTAACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTG
TATTGAAGATAATCACATTTACAAAAAATAACCAGTTTCAAGCTCTTCTCCAGTATGGTGATCC
AGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTCAGAATATTTATAATGCTTGCTGTACC
CTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAACAATGATAAAAGTAGGG
ATTATACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTATTGCTGC
AGCATTTGCCAAGGAGACCTCCCTCTTAGGGCTTCCTGTTGCAGCTGTTCCAGGAGCTCTGAGT
CCTTTGGCTATTCCAAATGCTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGC
CTGGAGTCTCAGCTGGTGGCAATACAGTCCTGTTGGTTAGCAATTTAAATGAAGAGATGGTTAC
GCCCCAAAGTCTGTTTACCCTCTTCGGTGTTTATGGAGATGTGCAGCGTGTGAAGATTTTGTAC
AATAAGAAAGACAGTGCTCTGATACAGATGGCTGATGGAAACCAATCACAACTTGCCATGAACC
ATCTTAATGGACAGAAAATGTATGGTAAAATTATTCGTGTTACCCTGTCTAAACATCAGACGGT
ACAACTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAGGATTTTGGTAATTCCCCATTG
CATCGTTTTAAGAAACCTGGATCCAAAAATTTTCAGAACATTTTTCCTCCTTCTGCAACCCTTC
ACCTATCCAATATCCCTCCTTCGGTAGCAGAAGAGGATCTACGAACACTGTTTGCTAACACTGG
GGGCACTGTGAAAGCATTTAAGTTTTTTCAAAGAGATCACAAAATGGCTCTTCTTCAGATGGCA
ACAGTGGAAGAAGCTATCCAGGCCTTGATTGATCTTCATAATTACAACCTTGGTGAAAACCATC
ATCTGAGAGTGTCTTTCTCCAAGTCAACAATTTAAAAAGGGGGAGGTGAAGATTGAGGGTGTAT
CACATTGTTTGGTGTCATCACCTATTGACTGTTCAGAAAAGTGGGGACCAGAGTTTGATTTTTT
TGTTGTTGTTGTTGTTTCCTTTTTTTTTCCATGCTGTTATCATTCCTTGGTTATAAAATGAAAT
GGCATACATAAAGGCAGAGTTGTTAACTGCTGTATTTCATCTGTTCTATAGGTAGGCCATTTTT
ATTGTCTGTTTATAATTTTAGTTTAATTATACTTTCCTTTTTCAACTTAGTTGACATACGTGCC
TTAAAAAGGAAAACTAGTGTTGCTATTGTGCATTTACTAGGTAAAAGGAATTGGTTGTCTAGGG
CACATTGTTATATGGGAATTACAATATGTTTAGGCAGGGGTGTGTAAAAAGGTTAAGTTTTTGT
TTCTCCTGCTTGGAACTTATTTTGAATTATTGGCTTGTCACATTTCTTTCTATTTAATCAAATA
AGATACATGATACTGAAAGAATTAAAGCAGCATTTTTTAGTTTTTACTACCTTAGGCTTTATTG
CTTTAAAAAAACATTGGCCTTTTGTATCTCACAATTCTGGTCTAGATTCAGTTATGAATGTAGG
CATTAGTTAAAATTAACAAGATGCAGAGTATTAATTTCTTAAGACAACAAAGTGATTTCTGTAA
GTTTGAGCCCTACGTGGAAAGCATTGTGGAATCTTAACCTTTTTGTACACACTCTTGTGGGACG
TATCATATAAATGTCAGCACTAAGTAATGTCTTGTTTGTGGCTGAATATTTTTCGTAGATGTTT
TTGAAGTTGACATGACTTACGTGCATTTAAATATATATTGCCATCCTTAGTTTGTAATTAAGAT
TTGGAATATGGTTGTGGATTTCTGAGCATGTGCAGACTGGTCTAGCTAGTTCAGGAACTGGTGC
ATGTATTTTTCAAAGATAAAGAAAGTGTACTGCGAAAATTTGCAGGAAGATTAATTTTGTGGCA
GTTTTCTAAAACTGACAACCAGGTGGGACCAAAGTTTATGTGCCTTTAGTCTTAATTTACCTTG
CATTGTAATATTCAGTTTTAATAAATCTTCAAAATATTTTGTATTTAGGAATAGATCTGACTTT
AATAAAAACATGGCTCAGAATCTACAGGTCAAATTAATTTGAACAGTTCTTGTCAATCTGAATT
GTTGATTCTGTTTAAATGACCAATACTTTTTGAAATTGATGTACTTAGTTTCAAGATTCATAGA
TTCTGTTATCTATGTAGACAGAATGGTCATGTATATTTTCTATTAGTTGAGTTTTTACATCTTT
AGAAATGTAAAATTCAGTATAGTTTGAAAGCGGCACAATTAAAAATTAATTTTCTAACAAAGTT
GGGAGGTTTGATGGTTGTTTAATTTCCTTTTGTGTGTACTCTGCTTACCTCTGTAGCATGCTCA
ATAAACACTTCTGTAGCTCTGTATTCACCTTTTCTGTCTTTCTCTGCTGCCTTTTCTCTTTCCT
CTTCTTTGTTTTTCACTCCACTGTGCTTCTGAATTCATGTTTATTCTCTGCCAGGGTGGGAAAG
GAGTAATAATATTATAATTCTATGGCTTTATACCATAAATAAATCTAGATGCTGTGAAAATATA

hide sequence

RefSeq Acc Id:

XM_005621877 ⟹ XP_005621934

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	52,870,944 - 52,948,673 (-)	NCBI
Dog10K_Boxer_Tasha	6	55,556,557 - 55,640,856 (-)	NCBI

Sequence:

show sequence

TCCGCCGCCGCCGCTGCCGCGCGCTGCCCCGTGCGCTCCGGCACCTTCGGCAATTTCCGTCGGG
CCCCGGCCGCCATTTTCTCGCCGCTTGTGTGTCTCGCTGGCTGCGTGGCTCGGTTCCTGTGAGC
GAAGCTTTGTCCGGTTCGGCAATGGACGGAATTGTCACTGAGGTTGCAGTTGGCGTGAAGAGAG
GATCTGACGAACTACTCTCAGGCAGTGTTCTCAGTAGTCCAAACTCTAATATGAGCAGCATGGT
GGTTACAGCCAATGGTAATGATAGCAAGAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCT
TCTCGTGTACTTCATATTCGAAAATTACCTGGTGAAGTGACAGAAACAGAAGTTATTGCTTTAG
GCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAGGAAAAAATCAGGCATTTTTGGA
ACTAGCAACAGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTGACACCTCATCTC
CGTAACCAACCAATTTATATCCAGTACTCCAATCACAAAGAACTAAAAACAGATAATACGTTAA
ACCAACGTGCTCAAGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAG
TGGCACCACAGTTAGTGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTGCTTAGAATAATTATT
GACAATATGTACTACCCTGTAACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTG
TATTGAAGATAATCACATTTACAAAAAATAACCAGTTTCAAGCTCTTCTCCAGTATGGTGATCC
AGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTCAGAATATTTATAATGCTTGCTGTACC
CTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAACAATGATAAAAGTAGGG
ATTATACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTATTGCTGC
AGCATTTGCCAAGGAGACCTCCCTCTTAGGGCTTCCTGTTGCAGCTGTTCCAGGAGCTCTGAGT
CCTTTGGCTATTCCAAATGCTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGC
CTGGAGTCTCAGCTGGTGGCAATACAGTCCTGTTGGTTAGCAATTTAAATGAAGAGATGGTTAC
GCCCCAAAGTCTGTTTACCCTCTTCGGTGTTTATGGAGATGTGCAGCGTGTGAAGATTTTGTAC
AATAAGAAAGACAGTGCTCTGATACAGATGGCTGATGGAAACCAATCACAACTTGCCATGAACC
ATCTTAATGGACAGAAAATGTATGGTAAAATTATTCGTGTTACCCTGTCTAAACATCAGACGGT
ACAACTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAGGATTTTGGTAATTCCCCATTG
CATCGTTTTAAGAAACCTGGATCCAAAAATTTTCAGAACATTTTTCCTCCTTCTGCAACCCTTC
ACCTATCCAATATCCCTCCTTCGGTAGCAGAAGAGGATCTACGAACACTGTTTGCTAACACTGG
GGGCACTGTGAAAGCATTTAAGTTTTTTCAAGATCACAAAATGGCTCTTCTTCAGATGGCAACA
GTGGAAGAAGCTATCCAGGCCTTGATTGATCTTCATAATTACAACCTTGGTGAAAACCATCATC
TGAGAGTGTCTTTCTCCAAGTCAACAATTTAAAAAGGGGGAGGTGAAGATTGAGGGTGTATCAC
ATTGTTTGGTGTCATCACCTATTGACTGTTCAGAAAAGTGGGGACCAGAGTTTGATTTTTTTGT
TGTTGTTGTTGTTTCCTTTTTTTTTCCATGCTGTTATCATTCCTTGGTTATAAAATGAAATGGC
ATACATAAAGGCAGAGTTGTTAACTGCTGTATTTCATCTGTTCTATAGGTAGGCCATTTTTATT
GTCTGTTTATAATTTTAGTTTAATTATACTTTCCTTTTTCAACTTAGTTGACATACGTGCCTTA
AAAAGGAAAACTAGTGTTGCTATTGTGCATTTACTAGGTAAAAGGAATTGGTTGTCTAGGGCAC
ATTGTTATATGGGAATTACAATATGTTTAGGCAGGGGTGTGTAAAAAGGTTAAGTTTTTGTTTC
TCCTGCTTGGAACTTATTTTGAATTATTGGCTTGTCACATTTCTTTCTATTTAATCAAATAAGA
TACATGATACTGAAAGAATTAAAGCAGCATTTTTTAGTTTTTACTACCTTAGGCTTTATTGCTT
TAAAAAAACATTGGCCTTTTGTATCTCACAATTCTGGTCTAGATTCAGTTATGAATGTAGGCAT
TAGTTAAAATTAACAAGATGCAGAGTATTAATTTCTTAAGACAACAAAGTGATTTCTGTAAGTT
TGAGCCCTACGTGGAAAGCATTGTGGAATCTTAACCTTTTTGTACACACTCTTGTGGGACGTAT
CATATAAATGTCAGCACTAAGTAATGTCTTGTTTGTGGCTGAATATTTTTCGTAGATGTTTTTG
AAGTTGACATGACTTACGTGCATTTAAATATATATTGCCATCCTTAGTTTGTAATTAAGATTTG
GAATATGGTTGTGGATTTCTGAGCATGTGCAGACTGGTCTAGCTAGTTCAGGAACTGGTGCATG
TATTTTTCAAAGATAAAGAAAGTGTACTGCGAAAATTTGCAGGAAGATTAATTTTGTGGCAGTT
TTCTAAAACTGACAACCAGGTGGGACCAAAGTTTATGTGCCTTTAGTCTTAATTTACCTTGCAT
TGTAATATTCAGTTTTAATAAATCTTCAAAATATTTTGTATTTAGGAATAGATCTGACTTTAAT
AAAAACATGGCTCAGAATCTACAGGTCAAATTAATTTGAACAGTTCTTGTCAATCTGAATTGTT
GATTCTGTTTAAATGACCAATACTTTTTGAAATTGATGTACTTAGTTTCAAGATTCATAGATTC
TGTTATCTATGTAGACAGAATGGTCATGTATATTTTCTATTAGTTGAGTTTTTACATCTTTAGA
AATGTAAAATTCAGTATAGTTTGAAAGCGGCACAATTAAAAATTAATTTTCTAACAAAGTTGGG
AGGTTTGATGGTTGTTTAATTTCCTTTTGTGTGTACTCTGCTTACCTCTGTAGCATGCTCAATA
AACACTTCTGTAGCTCTGTATTCACCTTTTCTGTCTTTCTCTGCTGCCTTTTCTCTTTCCTCTT
CTTTGTTTTTCACTCCACTGTGCTTCTGAATTCATGTTTATTCTCTGCCAGGGTGGGAAAGGAG
TAATAATATTATAATTCTATGGCTTTATACCATAAATAAATCTAGATGCTGTGAAAATATA

hide sequence

RefSeq Acc Id:

XM_005621878 ⟹ XP_005621935

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	52,870,944 - 52,948,673 (-)	NCBI
Dog10K_Boxer_Tasha	6	55,556,557 - 55,640,856 (-)	NCBI

Sequence:

show sequence

TCCGCCGCCGCCGCTGCCGCGCGCTGCCCCGTGCGCTCCGGCACCTTCGGCAATTTCCGTCGGG
CCCCGGCCGCCATTTTCTCGCCGCTTGTGTGTCTCGCTGGCTGCGTGGCTCGGTTCCTGTGAGC
GAAGCTTTGTCCGGTTCGGCAATGGACGGAATTGTCACTGAGGTTGCAGTTGGCGTGAAGAGAG
GATCTGACGAACTACTCTCAGGCAGTGTTCTCAGTAGTCCAAACTCTAATATGAGCAGCATGGT
GGTTACAGCCAATGGTAATGATAGCAAGAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCT
TCTCGTGTACTTCATATTCGAAAATTACCTGGTGAAGTGACAGAAACAGAAGTTATTGCTTTAG
GCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAGGAAAAAATCAGGCATTTTTGGA
ACTAGCAACAGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTGACACCTCATCTC
CGTAACCAACCAATTTATATCCAGTACTCCAATCACAAAGAACTAAAAACAGATAATACGTTAA
ACCAACGTGCTCAAGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAG
TGGCACCACAGTTAGTGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTGCTTAGAATAATTATT
GACAATATGTACTACCCTGTAACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTG
TATTGAAGATAATCACATTTACAAAAAATAACCAGTTTCAAGCTCTTCTCCAGTATGGTGATCC
AGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTCAGAATATTTATAATGCTTGCTGTACC
CTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAACAATGATAAAAGTAGGG
ATTATACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTATTGCTGC
AGCATTTGCCAAGGAGACCTCCCTCTTAGCTGTTCCAGGAGCTCTGAGTCCTTTGGCTATTCCA
AATGCTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGTCTCAGCTG
GTGGCAATACAGTCCTGTTGGTTAGCAATTTAAATGAAGAGATGGTTACGCCCCAAAGTCTGTT
TACCCTCTTCGGTGTTTATGGAGATGTGCAGCGTGTGAAGATTTTGTACAATAAGAAAGACAGT
GCTCTGATACAGATGGCTGATGGAAACCAATCACAACTTGCCATGAACCATCTTAATGGACAGA
AAATGTATGGTAAAATTATTCGTGTTACCCTGTCTAAACATCAGACGGTACAACTACCTCGAGA
GGGACTTGATGATCAAGGGCTAACAAAGGATTTTGGTAATTCCCCATTGCATCGTTTTAAGAAA
CCTGGATCCAAAAATTTTCAGAACATTTTTCCTCCTTCTGCAACCCTTCACCTATCCAATATCC
CTCCTTCGGTAGCAGAAGAGGATCTACGAACACTGTTTGCTAACACTGGGGGCACTGTGAAAGC
ATTTAAGTTTTTTCAAAGAGATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAAGAAGCT
ATCCAGGCCTTGATTGATCTTCATAATTACAACCTTGGTGAAAACCATCATCTGAGAGTGTCTT
TCTCCAAGTCAACAATTTAAAAAGGGGGAGGTGAAGATTGAGGGTGTATCACATTGTTTGGTGT
CATCACCTATTGACTGTTCAGAAAAGTGGGGACCAGAGTTTGATTTTTTTGTTGTTGTTGTTGT
TTCCTTTTTTTTTCCATGCTGTTATCATTCCTTGGTTATAAAATGAAATGGCATACATAAAGGC
AGAGTTGTTAACTGCTGTATTTCATCTGTTCTATAGGTAGGCCATTTTTATTGTCTGTTTATAA
TTTTAGTTTAATTATACTTTCCTTTTTCAACTTAGTTGACATACGTGCCTTAAAAAGGAAAACT
AGTGTTGCTATTGTGCATTTACTAGGTAAAAGGAATTGGTTGTCTAGGGCACATTGTTATATGG
GAATTACAATATGTTTAGGCAGGGGTGTGTAAAAAGGTTAAGTTTTTGTTTCTCCTGCTTGGAA
CTTATTTTGAATTATTGGCTTGTCACATTTCTTTCTATTTAATCAAATAAGATACATGATACTG
AAAGAATTAAAGCAGCATTTTTTAGTTTTTACTACCTTAGGCTTTATTGCTTTAAAAAAACATT
GGCCTTTTGTATCTCACAATTCTGGTCTAGATTCAGTTATGAATGTAGGCATTAGTTAAAATTA
ACAAGATGCAGAGTATTAATTTCTTAAGACAACAAAGTGATTTCTGTAAGTTTGAGCCCTACGT
GGAAAGCATTGTGGAATCTTAACCTTTTTGTACACACTCTTGTGGGACGTATCATATAAATGTC
AGCACTAAGTAATGTCTTGTTTGTGGCTGAATATTTTTCGTAGATGTTTTTGAAGTTGACATGA
CTTACGTGCATTTAAATATATATTGCCATCCTTAGTTTGTAATTAAGATTTGGAATATGGTTGT
GGATTTCTGAGCATGTGCAGACTGGTCTAGCTAGTTCAGGAACTGGTGCATGTATTTTTCAAAG
ATAAAGAAAGTGTACTGCGAAAATTTGCAGGAAGATTAATTTTGTGGCAGTTTTCTAAAACTGA
CAACCAGGTGGGACCAAAGTTTATGTGCCTTTAGTCTTAATTTACCTTGCATTGTAATATTCAG
TTTTAATAAATCTTCAAAATATTTTGTATTTAGGAATAGATCTGACTTTAATAAAAACATGGCT
CAGAATCTACAGGTCAAATTAATTTGAACAGTTCTTGTCAATCTGAATTGTTGATTCTGTTTAA
ATGACCAATACTTTTTGAAATTGATGTACTTAGTTTCAAGATTCATAGATTCTGTTATCTATGT
AGACAGAATGGTCATGTATATTTTCTATTAGTTGAGTTTTTACATCTTTAGAAATGTAAAATTC
AGTATAGTTTGAAAGCGGCACAATTAAAAATTAATTTTCTAACAAAGTTGGGAGGTTTGATGGT
TGTTTAATTTCCTTTTGTGTGTACTCTGCTTACCTCTGTAGCATGCTCAATAAACACTTCTGTA
GCTCTGTATTCACCTTTTCTGTCTTTCTCTGCTGCCTTTTCTCTTTCCTCTTCTTTGTTTTTCA
CTCCACTGTGCTTCTGAATTCATGTTTATTCTCTGCCAGGGTGGGAAAGGAGTAATAATATTAT
AATTCTATGGCTTTATACCATAAATAAATCTAGATGCTGTGAAAATATA

hide sequence

RefSeq Acc Id:

XM_038479966 ⟹ XP_038335894

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	52,917,509 - 52,995,061 (-)	NCBI

RefSeq Acc Id:

XM_038479967 ⟹ XP_038335895

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	52,917,509 - 52,995,061 (-)	NCBI

RefSeq Acc Id:

XM_038479968 ⟹ XP_038335896

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	52,917,509 - 52,995,061 (-)	NCBI

RefSeq Acc Id:

XM_038479969 ⟹ XP_038335897

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	52,917,509 - 52,995,060 (-)	NCBI

RefSeq Acc Id:

XM_038541246 ⟹ XP_038397174

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	53,342,619 - 53,426,749 (-)	NCBI

RefSeq Acc Id:

XM_038541247 ⟹ XP_038397175

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	53,342,619 - 53,426,749 (-)	NCBI

RefSeq Acc Id:

XM_038541248 ⟹ XP_038397176

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	53,342,619 - 53,426,749 (-)	NCBI

RefSeq Acc Id:

XM_038541249 ⟹ XP_038397177

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	53,342,619 - 53,426,748 (-)	NCBI

RefSeq Acc Id:

XM_038605394 ⟹ XP_038461322

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	52,896,678 - 52,974,367 (-)	NCBI

RefSeq Acc Id:

XM_038605395 ⟹ XP_038461323

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	52,896,678 - 52,974,367 (-)	NCBI

RefSeq Acc Id:

XM_038605396 ⟹ XP_038461324

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	52,896,678 - 52,974,367 (-)	NCBI

RefSeq Acc Id:

XM_038605397 ⟹ XP_038461325

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	52,896,678 - 52,974,366 (-)	NCBI

RefSeq Acc Id:

XM_038670028 ⟹ XP_038525956

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	53,223,659 - 53,275,783 (-)	NCBI

RefSeq Acc Id:

XM_038670029 ⟹ XP_038525957

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	53,223,659 - 53,275,783 (-)	NCBI

RefSeq Acc Id:

XM_038670030 ⟹ XP_038525958

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	53,223,659 - 53,275,783 (-)	NCBI

RefSeq Acc Id:

XM_038670031 ⟹ XP_038525959

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	53,223,659 - 53,275,783 (-)	NCBI

RefSeq Acc Id:

XM_547270 ⟹ XP_547270

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	52,872,573 - 52,948,673 (-)	NCBI
Dog10K_Boxer_Tasha	6	55,556,557 - 55,640,855 (-)	NCBI

Sequence:

show sequence

TCCGCCGCCGCCGCTGCCGCGCGCTGCCCCGTGCGCTCCGGCACCTTCGGCAATTTCCGTCGGG
CCCCGGCCGCCATTTTCTCGCCGCTTGTGTGTCTCGCTGGCTGCGTGGCTCGGTTCCTGTGAGC
GAAGCTTTGTCCGGTTCGGCAATGGACGGAATTGTCACTGAGGTTGCAGTTGGCGTGAAGAGAG
GATCTGACGAACTACTCTCAGGCAGTGTTCTCAGTAGTCCAAACTCTAATATGAGCAGCATGGT
GGTTACAGCCAATGGTAATGATAGCAAGAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCT
TCTCGTGTACTTCATATTCGAAAATTACCTGGTGAAGTGACAGAAACAGAAGTTATTGCTTTAG
GCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAGGAAAAAATCAGGCATTTTTGGA
ACTAGCAACAGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTGACACCTCATCTC
CGTAACCAACCAATTTATATCCAGTACTCCAATCACAAAGAACTAAAAACAGATAATACGTTAA
ACCAACGTGCTCAAGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAG
TGGCACCACAGTTAGTGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTGCTTAGAATAATTATT
GACAATATGTACTACCCTGTAACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTG
TATTGAAGATAATCACATTTACAAAAAATAACCAGTTTCAAGCTCTTCTCCAGTATGGTGATCC
AGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTCAGAATATTTATAATGCTTGCTGTACC
CTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAACAATGATAAAAGTAGGG
ATTATACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTATTGCTGC
AGCATTTGCCAAGGAGACCTCCCTCTTAGCTGTTCCAGGAGCTCTGAGTCCTTTGGCTATTCCA
AATGCTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGTCTCAGCTG
GTGGCAATACAGTCCTGTTGGTTAGCAATTTAAATGAAGAGATGGTTACGCCCCAAAGTCTGTT
TACCCTCTTCGGTGTTTATGGAGATGTGCAGCGTGTGAAGATTTTGTACAATAAGAAAGACAGT
GCTCTGATACAGATGGCTGATGGAAACCAATCACAACTTGCCATGAACCATCTTAATGGACAGA
AAATGTATGGTAAAATTATTCGTGTTACCCTGTCTAAACATCAGACGGTACAACTACCTCGAGA
GGGACTTGATGATCAAGGGCTAACAAAGGATTTTGGTAATTCCCCATTGCATCGTTTTAAGAAA
CCTGGATCCAAAAATTTTCAGAACATTTTTCCTCCTTCTGCAACCCTTCACCTATCCAATATCC
CTCCTTCGGTAGCAGAAGAGGATCTACGAACACTGTTTGCTAACACTGGGGGCACTGTGAAAGC
ATTTAAGTTTTTTCAAGATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAAGAAGCTATC
CAGGCCTTGATTGATCTTCATAATTACAACCTTGGTGAAAACCATCATCTGAGAGTGTCTTTCT
CCAAGTCAACAATTTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005621933	(Get FASTA)	NCBI Sequence Viewer
	XP_005621934	(Get FASTA)	NCBI Sequence Viewer
	XP_005621935	(Get FASTA)	NCBI Sequence Viewer
	XP_038335894	(Get FASTA)	NCBI Sequence Viewer
	XP_038335895	(Get FASTA)	NCBI Sequence Viewer
	XP_038335896	(Get FASTA)	NCBI Sequence Viewer
	XP_038335897	(Get FASTA)	NCBI Sequence Viewer
	XP_038397174	(Get FASTA)	NCBI Sequence Viewer
	XP_038397175	(Get FASTA)	NCBI Sequence Viewer
	XP_038397176	(Get FASTA)	NCBI Sequence Viewer
	XP_038397177	(Get FASTA)	NCBI Sequence Viewer
	XP_038461322	(Get FASTA)	NCBI Sequence Viewer
	XP_038461323	(Get FASTA)	NCBI Sequence Viewer
	XP_038461324	(Get FASTA)	NCBI Sequence Viewer
	XP_038461325	(Get FASTA)	NCBI Sequence Viewer
	XP_038525956	(Get FASTA)	NCBI Sequence Viewer
	XP_038525957	(Get FASTA)	NCBI Sequence Viewer
	XP_038525958	(Get FASTA)	NCBI Sequence Viewer
	XP_038525959	(Get FASTA)	NCBI Sequence Viewer
	XP_547270	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029783.6
	ENSCAFP00000048198.2
	ENSCAFP00000067750.1
	ENSCAFP00000071036.1
	ENSCAFP00030022932.1
	ENSCAFP00030023022.1
	ENSCAFP00030023123.1
	ENSCAFP00040005297.1
	ENSCAFP00040005313.1
	ENSCAFP00040005377.1
	ENSCAFP00040005498.1
	ENSCAFP00845020168
	ENSCAFP00845020168.1
	ENSCAFP00845020188.1

RefSeq Acc Id:	XP_005621933 ⟸ XM_005621876
- Peptide Label:	isoform X17
- UniProtKB:	A0A8P0PLX0 (UniProtKB/TrEMBL), A0A8P0NY50 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIR KLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI QYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPV TLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSK LVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNA AAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSAL IQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPG SKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQ ALIDLHNYNLGENHHLRVSFSKSTI hide sequence

RefSeq Acc Id:	XP_547270 ⟸ XM_547270
- Peptide Label:	isoform X20
- UniProtKB:	A0A8P0NY50 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIR KLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI QYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPV TLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSK LVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAA AAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMAD GNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQ NIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLH NYNLGENHHLRVSFSKSTI hide sequence

RefSeq Acc Id:	XP_005621935 ⟸ XM_005621878
- Peptide Label:	isoform X19
- UniProtKB:	A0A8P0NY50 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIR KLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI QYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPV TLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSK LVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAA AAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMAD GNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQ NIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDL HNYNLGENHHLRVSFSKSTI hide sequence

RefSeq Acc Id:	XP_005621934 ⟸ XM_005621877
- Peptide Label:	isoform X18
- UniProtKB:	A0A8C0NAY8 (UniProtKB/TrEMBL), A0A8P0NY50 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRVLHIR KLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI QYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPV TLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSK LVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNA AAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSAL IQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPG SKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQA LIDLHNYNLGENHHLRVSFSKSTI hide sequence

Ensembl Acc Id:

ENSCAFP00000048198 ⟸ ENSCAFT00000067256

Ensembl Acc Id:

ENSCAFP00000029783 ⟸ ENSCAFT00000031985

RefSeq Acc Id:	XP_038335896 ⟸ XM_038479968
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038335895 ⟸ XM_038479967
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038335894 ⟸ XM_038479966
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038335897 ⟸ XM_038479969
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038461324 ⟸ XM_038605396
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038461323 ⟸ XM_038605395
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038461322 ⟸ XM_038605394
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038461325 ⟸ XM_038605397
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038525959 ⟸ XM_038670031
- Peptide Label:	isoform X4
- UniProtKB:	A0A8P0SNR6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525958 ⟸ XM_038670030
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3S0S5 (UniProtKB/TrEMBL), A0A8P0SNR6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525957 ⟸ XM_038670029
- Peptide Label:	isoform X2
- UniProtKB:	A0A8P0SNR6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525956 ⟸ XM_038670028
- Peptide Label:	isoform X1
- UniProtKB:	A0A8P0SNR6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397176 ⟸ XM_038541248
- Peptide Label:	isoform X15
- UniProtKB:	A0A8P0NY50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397175 ⟸ XM_038541247
- Peptide Label:	isoform X14
- UniProtKB:	A0A8C0NAY8 (UniProtKB/TrEMBL), A0A8P0NY50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397174 ⟸ XM_038541246
- Peptide Label:	isoform X13
- UniProtKB:	A0A8P0NY50 (UniProtKB/TrEMBL), A0A8P0PLX0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397177 ⟸ XM_038541249
- Peptide Label:	isoform X16
- UniProtKB:	A0A8P0NY50 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845020168 ⟸ ENSCAFT00845025604

Ensembl Acc Id:

ENSCAFP00845020188 ⟸ ENSCAFT00845025625

Protein Domains

RRM

Promoters

RGD ID:

13683809

Promoter ID:

EPDNEW_C1876

Type:

multiple initiation site

Name:

PTBP2_1

Description:

polypyrimidine tract binding protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	52,948,598 - 52,948,658	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000020080	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030014155	UniProtKB/TrEMBL
	ENSCAFG00040003172	UniProtKB/TrEMBL
	ENSCAFG00845014300	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000031985.6	UniProtKB/TrEMBL
	ENSCAFT00000067256.2	UniProtKB/TrEMBL
	ENSCAFT00000095057.1	UniProtKB/TrEMBL
	ENSCAFT00000106246.1	UniProtKB/TrEMBL
	ENSCAFT00030026263.1	UniProtKB/TrEMBL
	ENSCAFT00030026365.1	UniProtKB/TrEMBL
	ENSCAFT00030026490.1	UniProtKB/TrEMBL
	ENSCAFT00040006133.1	UniProtKB/TrEMBL
	ENSCAFT00040006149.1	UniProtKB/TrEMBL
	ENSCAFT00040006218.1	UniProtKB/TrEMBL
	ENSCAFT00040006355.1	UniProtKB/TrEMBL
	ENSCAFT00845025604	ENTREZGENE
	ENSCAFT00845025604.1	UniProtKB/TrEMBL
	ENSCAFT00845025625.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	HnRNP-L/PTB	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	PTBP1_RRM	UniProtKB/TrEMBL
	PTBP2_RRM1	UniProtKB/TrEMBL
	PTBP2_RRM3	UniProtKB/TrEMBL
	PTBP2_RRM4	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
KEGG Report	cfa:490149	UniProtKB/TrEMBL
NCBI Gene	PTBP2	ENTREZGENE
PANTHER	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
	RRM_5	UniProtKB/TrEMBL
	RRM_8	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8C0N8I4_CANLF	UniProtKB/TrEMBL
	A0A8C0NAY8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0NG96_CANLF	UniProtKB/TrEMBL
	A0A8C0PWX9_CANLF	UniProtKB/TrEMBL
	A0A8C0PXY2_CANLF	UniProtKB/TrEMBL
	A0A8I3NJA1_CANLF	UniProtKB/TrEMBL
	A0A8I3S0S5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NY50	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PLX0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SNR6	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A8P0PGQ8	UniProtKB/TrEMBL
VGNC ID	VGNC:54061	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations