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Gene: LITAF (lipopolysaccharide induced TNF factor) Canis lupus familiaris

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Symbol:

LITAF

Name:

lipopolysaccharide induced TNF factor

RGD ID:

12147932

Description:

ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); identical protein binding (inferred); metal ion binding (inferred); INVOLVED IN cellular response to lipopolysaccharide (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); FOUND IN cytoplasmic side of early endosome membrane (inferred); cytoplasmic side of late endosome membrane (inferred); cytoplasmic side of lysosomal membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lipopolysaccharide-induced tumor necrosis factor-alpha factor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	31,229,153 - 31,259,670 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	32,609,055 - 32,637,581 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	31,407,890 - 31,436,572 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	31,407,820 - 31,438,525 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	31,221,767 - 31,250,391 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	31,095,973 - 31,124,591 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	31,519,895 - 31,548,477 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

basal cell carcinoma (ISO)

Charcot-Marie-Tooth disease (ISO)

Charcot-Marie-Tooth disease type 1 (ISO)

Charcot-Marie-Tooth disease type 1C (ISO)

Experimental Diabetes Mellitus (ISO)

genetic disease (ISO)

Prostatic Neoplasms (ISO)

spinal muscular atrophy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to lipopolysaccharide (ISO)

negative regulation of non-canonical NF-kappaB signal transduction (ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of transcription by RNA polymerase II (IEA)

regulation of cytokine production (IBA,ISO)

response to lipopolysaccharide (ISO)

Cellular Component

cytoplasmic side of early endosome membrane (IEA)

cytoplasmic side of late endosome membrane (IBA,IEA)

cytoplasmic side of lysosomal membrane (IBA,IEA)

cytoplasmic side of plasma membrane (IEA)

endosome membrane (IEA)

Golgi apparatus (IEA)

late endosome membrane (IEA)

lysosomal membrane (IEA)

nuclear speck (IEA)

nucleoplasm (IEA)

nucleus (IBA)

plasma membrane (IEA)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

identical protein binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

WW domain binding (IEA)

zinc ion binding (IBA,IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LITAF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	31,229,153 - 31,259,670 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	32,609,055 - 32,637,581 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	31,407,890 - 31,436,572 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	31,407,820 - 31,438,525 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	31,221,767 - 31,250,391 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	31,095,973 - 31,124,591 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	31,519,895 - 31,548,477 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LITAF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	11,547,722 - 11,640,317 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	11,546,875 - 11,636,395 (-)	Ensembl			hg38	GRCh38
GRCh37	16	11,641,578 - 11,681,322 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	11,549,357 - 11,587,730 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	11,549,957 - 11,587,730	NCBI
Celera	16	11,813,516 - 11,854,903 (-)	NCBI		Celera
Cytogenetic Map	16	p13.13	NCBI
HuRef	16	11,558,982 - 11,598,664 (-)	NCBI		HuRef
CHM1_1	16	11,641,642 - 11,681,379 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	11,583,827 - 11,676,644 (-)	NCBI		T2T-CHM13v2.0

Litaf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	10,777,137 - 10,810,985 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	10,777,139 - 10,884,021 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	10,959,273 - 10,993,121 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	10,959,275 - 11,066,157 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	10,959,366 - 10,993,214 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	10,872,852 - 10,880,228 (-)	NCBI		MGSCv36	mm8
Celera	16	11,588,622 - 11,622,564 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	6.28	NCBI

Litaf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	5,163,258 - 5,199,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	5,163,242 - 5,199,930 (+)	Ensembl				GRCr8
mRatBN7.2	10	4,656,308 - 4,692,981 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	4,625,552 - 4,692,763 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	9,352,930 - 9,389,597 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	8,874,034 - 8,910,699 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	4,512,289 - 4,548,952 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	10	8,206,424 - 8,243,089 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	10	8,871,485 - 8,908,152 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	10	10,565,085 - 10,601,752 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	10	10,575,345 - 10,612,006 (+)	NCBI		F344_StmMcwi
Rnor_6.0	10	4,753,546 - 4,763,272 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,719,713 - 4,763,510 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	3,580,243 - 3,589,969 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	4,614,177 - 4,623,903 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	3,704,946 - 3,714,672 (+)	NCBI		Celera
RGSC_v3.1	10	4,587,486 - 4,623,903 (+)	NCBI
Cytogenetic Map	10	q11	NCBI

Litaf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	7,077,823 - 7,083,437 (+)	Ensembl
ChiLan1.0	NW_004955442	7,054,418 - 7,084,973 (+)	NCBI	ChiLan1.0	ChiLan1.0

LITAF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	12,096,353 - 12,135,778 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	15,866,852 - 15,905,996 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	10,488,738 - 10,527,843 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	11,714,325 - 11,753,902 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	11,714,325 - 11,750,521 (-)	Ensembl			panPan2	panpan1.1

Litaf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	111,563,943 - 111,567,545 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	9,409,692 - 9,421,974 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	9,409,378 - 9,421,974 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LITAF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	31,482,353 - 31,579,082 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	31,482,605 - 31,576,211 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	32,319,463 - 32,363,158 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LITAF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	11,023,158 - 11,099,133 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	11,021,717 - 11,059,149 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	19,054,852 - 19,135,028 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Litaf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	6,720,497 - 6,747,317 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624782	6,715,584 - 6,748,873 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Litaf
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	11,349,086 - 11,386,235 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in LITAF
496 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038479132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038540357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038604459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_547124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00845022652 ⟹ ENSCAFP00845017763

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	31,407,820 - 31,437,675 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845022668 ⟹ ENSCAFP00845017776

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	31,407,958 - 31,438,525 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845022685 ⟹ ENSCAFP00845017791

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	31,428,840 - 31,438,525 (+)	Ensembl

RefSeq Acc Id:

XM_038479132 ⟹ XP_038335060

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	31,221,767 - 31,250,391 (+)	NCBI

RefSeq Acc Id:

XM_038540357 ⟹ XP_038396285

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	31,519,895 - 31,548,477 (+)	NCBI

RefSeq Acc Id:

XM_038604459 ⟹ XP_038460387

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	31,095,973 - 31,124,591 (+)	NCBI

RefSeq Acc Id:

XM_038669157 ⟹ XP_038525085

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	31,407,890 - 31,436,572 (+)	NCBI

RefSeq Acc Id:

XM_547124 ⟹ XP_547124

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	31,229,153 - 31,259,670 (+)	NCBI
Dog10K_Boxer_Tasha	6	32,609,055 - 32,637,581 (+)	NCBI

Sequence:

show sequence

CAGCTTGGCTGCGCCGCGCGCTCAGACCTCCCGGCTCGACTGGCGGCGCGGGCGGCGGTAAAAT
GTCTGTTCCAGGATCCTACCAGGCGGCCGCTGGGCCTTCCTCGGTGCCAACTGCGCCGCCATCC
TATGAAGAGACGGTGGCCGTCAATAGTTACTTCCCTATGCCTCCTGCCCCTGCGCCAGGGCCGA
CCACGGGGCTGGTGACGGGCCCGGATGGCAAGGGCATGAATCCGCCAGCCTACTACACCCAGCC
AGTGCCCGTCCCCAACGCCAATGCAATCGCCGTGCAGACCGTCTACGTGCAGCAGCCCATCTCC
TTTTTTGACCGTCCGATCCAGATGTGCTGTCCTTCCTGCAACAAGATGATTGTGACCCAGCTGT
CCTATAATGCCGGTGCCCTCACCTGGCTCTCTTGCGGGAGCCTGTGCCTGCTGGGGTGCATCGC
GGGCTGCTGCTTCATCCCCTTCTGTGTGGACGCCCTGCAGGACGTGGACCACTACTGTCCCAAC
TGCAAAGCTCTCCTGGGCACCTACAAGCGTTTGTAGGACTCGGCCAGACCTGGAGGAAGCTGCG
TGCTGCCCAGAGTGCTCTGCAACCCTCACCCGGCCCCGTTCCACCTTGGTGGCCTCATCTCTCC
AGGGGCTCCACCCTCGTGTCTTCTTTTTGGGGAAAAAATATATCGCAAAAAGTAACACACCTCC
AAAAACCCCAGAGATTGCTGCTTGGAGTCGTGCGCAGGACATGCAAAGACATTCACCTTGAATG
CTGGTTCCCGCCTGCCGTGACCCCAAGGCACCCCACCTTAACTGTGACTGTCGCCCCTGTCTGA
ATATCTTCGGGTGGTTTGCCATGGGCCAGCTTCGTTTACTGGCCTCCGTGGGCCTTCCTGGGGG
TGGTCTCAAACCGAGAAGCTGCGGCTTGCCTTATTTTTGAGACTGTCCTGGCCCGCAGACGGCC
GGCCCCACCTTCAGTGCCTGCCACCATGTGCATCTGTTCCCACTTCCGATGACAAAACTCTTGC
CTTAGAAACAAAGGGCTTGCCTCTCAGAGCCTTTTCGTTAGCACACAAATTCACTTTGATTTTT
TCATTCCTTCTTTCAGCATAAGGAGGAACAATTCACACCCACCACATTTACACCCTTGAGATCA
TTAATACATGCTAGAAACATGTAGGGTTGGGTCTTGACCATGGATCTTTTCCTTGGTTCTCCGC
ACCAGACCCTCAGCCACTTTGCACGAAGGGCTTTTTTTCTAGTAGGGGAGTCATTTATATTCAC
CATTTTTATGACCCCCTTTGGGTCTTAAACACCTTTGAACATAAGTTTGGAAGGAGGGATTTAT
AGAACCATTTTTCTTAACTGTAGGATTGTTACTACTTTCCTACTTCCCACGGAAGGCACTCTTT
TTTTTTTTTTTTTTTGGTTCTTAACAGAAAAAGCAATGGATGATTTTTATCCATAGCCTCTATG
TGGGTTTAGTGCAGTTCTACAAAAACCTCTATAATGGAACTCTTCAAGTGGGACCCCTTTGGGG
TTCCCAGTGGTGTGTTTAGAGAAACAGAGGAAAGCACAGTGTGAGCATCCAGGTACCATGGTGC
TGGAGAGCTTGGGGACTTACCTGTTTCAAAGGAGTTTGAATTCTGACTTTATTTTTCAGAGATA
CGATTTGTTGTATGACATCAGAAGACATGATTTCTAGGACTCAATCAGCAAATCAGAGTTATCG
TTTAGCTGCTGCATCAGCTTTGAAATCAAGATAAAACTGGGCTCGAGTTACAAGTGTCCCCATT
TTGATGATAATAGACACAGAGAATGCACATGAATAATAATACATAGAAAGGAAGCCTAGACCTG
GAACACACACACACACACACACACACACACACAAATGTGTATATTGGCCGAAAATTATAGTTGT
AACCAGTGATCCAGCTTATTCTTTTGATATTTTGAAAGTCCCAGTAATTATTTTTGCAATGAAT
ACGGATACGACATAGTCCTTTGGTGTTACCTGCTTTTAAAAAATAAAGTCTTAAAAAAAATAAA
TTAAAAAATAAAATCTTTGGTTCACTCGGTGAACTATTTATAAGTTCTTATGATGTGAAGGAAA
TCTTGTGTTTTCCAGCCACAAAGAACCTTTACTTGTTCCATAAGGGTAGAAAACCTCTCGTGAT
TAAAAACGTCAGACTCGCTGAATATCCTTCGATGTCAAGATGACCGATGTTGATTCGGGTGGAT
TGCTAGCGAGTCCGACTGGGACGTTAGGCTGTTGGAACCCACCAGGCATCATCTATGGCAGCAG
GCCACAGCTTTCAAGTTTTGAGAAAATGCACAGAAGAAAGCGGTCCTCATTCATTCTGCAAACA
AAACATGCTTTGTTAATTGATCCGGGGCAGTTGTGAGATGCTAGAAGGGGGCATTGTAACTGGC
CGGGAATGTGAATGCCATCAATCCTTTTCCTACCTGGCGATAAAGCTTCATTTTTCAGAAGGCA
CAGGAGAAGACCATCATCTTGGTGTGGCTAACGTTGTCATTTAGACCCCAACTTGCACAGTCCC
CCCAAAATTGCCGCTCACCCGATCTTGTTTGTGTCTTTTTCCTTTTCATTTGACAAAATGAAGG
CCATGCATATTTAGCAGTTTTGCTCAGATGGGGGTATACAAATGGTCTCAAGCTGTTATTAATT
ACATATGCAGAGTCTGCAAAACAACAGCCCTATTTCAAGGACCATAAAACCTACTCTGTGGAAC
TAAAAATAAAGTCAGATGCCCAGAGTAGGAAGCCTCCATCCTTCATTCCCTTGTATTTTTTTTT
AAATTTTTTATCATTCCCTTGTATTGTTGAGAATGCAGGCTTACTCCTATATGGTTGCAAATCA
AAAGGATCTTTTGGAAATAAAAAAAAAAAAAGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038335060	(Get FASTA)	NCBI Sequence Viewer
	XP_038396285	(Get FASTA)	NCBI Sequence Viewer
	XP_038460387	(Get FASTA)	NCBI Sequence Viewer
	XP_038525085	(Get FASTA)	NCBI Sequence Viewer
	XP_547124	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000068629.1
	ENSCAFP00000070783.1
	ENSCAFP00000072204.1
	ENSCAFP00030018350.1
	ENSCAFP00030018378.1
	ENSCAFP00030018404.1
	ENSCAFP00040006730.1
	ENSCAFP00845017763.1
	ENSCAFP00845017776
	ENSCAFP00845017776.1
	ENSCAFP00845017791.1

RefSeq Acc Id:	XP_547124 ⟸ XM_547124
- UniProtKB:	A0A8C0LF91 (UniProtKB/TrEMBL), A0A8C0Q164 (UniProtKB/TrEMBL), A0A8I3NQ87 (UniProtKB/TrEMBL), A0A8C0LGS4 (UniProtKB/TrEMBL), A0A8C0MXG8 (UniProtKB/TrEMBL), A0A8I3RZL9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVPGSYQAAAGPSSVPTAPPSYEETVAVNSYFPMPPAPAPGPTTGLVTGPDGKGMNPPAYYTQ PVPVPNANAIAVQTVYVQQPISFFDRPIQMCCPSCNKMIVTQLSYNAGALTWLSCGSLCLLGCI AGCCFIPFCVDALQDVDHYCPNCKALLGTYKRL hide sequence

RefSeq Acc Id:

XP_038335060 ⟸ XM_038479132

RefSeq Acc Id:

XP_038460387 ⟸ XM_038604459

RefSeq Acc Id:	XP_038525085 ⟸ XM_038669157
- UniProtKB:	A0A8C0LF91 (UniProtKB/TrEMBL), A0A8C0Q164 (UniProtKB/TrEMBL), A0A8I3NQ87 (UniProtKB/TrEMBL), A0A8C0LGS4 (UniProtKB/TrEMBL), A0A8C0MXG8 (UniProtKB/TrEMBL), A0A8I3RZL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038396285 ⟸ XM_038540357
- UniProtKB:	A0A8C0LF91 (UniProtKB/TrEMBL), A0A8C0LGS4 (UniProtKB/TrEMBL), A0A8C0MXG8 (UniProtKB/TrEMBL), A0A8C0Q164 (UniProtKB/TrEMBL), A0A8I3NQ87 (UniProtKB/TrEMBL), A0A8I3RZL9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845017763 ⟸ ENSCAFT00845022652

Ensembl Acc Id:

ENSCAFP00845017791 ⟸ ENSCAFT00845022685

Ensembl Acc Id:

ENSCAFP00845017776 ⟸ ENSCAFT00845022668

Protein Domains

LITAF

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000058675	UniProtKB/TrEMBL
	ENSCAFG00030011368	UniProtKB/TrEMBL
	ENSCAFG00040004029	UniProtKB/TrEMBL
	ENSCAFG00845012726	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000096661.1	UniProtKB/TrEMBL
	ENSCAFT00000097788.1	UniProtKB/TrEMBL
	ENSCAFT00000104354.1	UniProtKB/TrEMBL
	ENSCAFT00030021043.1	UniProtKB/TrEMBL
	ENSCAFT00030021077.1	UniProtKB/TrEMBL
	ENSCAFT00030021107.1	UniProtKB/TrEMBL
	ENSCAFT00040007705.1	UniProtKB/TrEMBL
	ENSCAFT00845022652.1	UniProtKB/TrEMBL
	ENSCAFT00845022668	ENTREZGENE
	ENSCAFT00845022668.1	UniProtKB/TrEMBL
	ENSCAFT00845022685.1	UniProtKB/TrEMBL
InterPro	LITAF	UniProtKB/TrEMBL
	LITAF_fam	UniProtKB/TrEMBL
KEGG Report	cfa:490004	UniProtKB/TrEMBL
NCBI Gene	LITAF	ENTREZGENE
PANTHER	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	UniProtKB/TrEMBL
	PTHR23292	UniProtKB/TrEMBL
Pfam	zf-LITAF-like	UniProtKB/TrEMBL
PROSITE	LITAF	UniProtKB/TrEMBL
SMART	LITAF	UniProtKB/TrEMBL
UniProt	A0A8C0LF91	ENTREZGENE
	A0A8C0LGS4	ENTREZGENE
	A0A8C0MXG8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0N0M1_CANLF	UniProtKB/TrEMBL
	A0A8C0Q164	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NDL5_CANLF	UniProtKB/TrEMBL
	A0A8I3NQ87	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RZL9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PI88_CANLF	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM