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Gene: RAB23 (RAB23, member RAS oncogene family) Canis lupus familiaris

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Symbol:

RAB23

Name:

RAB23, member RAS oncogene family (Ensembl:RAB23, member RAS onco family)

RGD ID:

12094810

Description:

ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN cellular defense response (ortholog); cilium assembly (ortholog); craniofacial suture morphogenesis (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Carpenter syndrome (ortholog); Carpenter syndrome 1 (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ras-related protein Rab-23; ras-related protein Rab-23-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	24,388,530 - 24,438,956 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	24,387,643 - 24,421,869 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	24,318,464 - 24,367,881 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	24,928,158 - 24,977,111 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	24,928,188 - 24,962,260 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	24,425,198 - 24,474,987 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	24,526,566 - 24,576,395 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	24,658,037 - 24,707,772 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

bladder exstrophy-epispadias-cloacal exstrophy complex (ISO)

Carpenter syndrome (ISO)

Carpenter syndrome 1 (ISO)

Desbuquois dysplasia (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Cellular Component

autophagosome (IBA,IEA)

cell junction (ISO)

cytoplasm (ISO)

cytoplasmic vesicle (IEA)

cytosol (ISO)

endomembrane system (IBA)

endosome membrane (IBA,IEA)

phagocytic vesicle (ISO)

phagocytic vesicle membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein activity (IEA,ISO)

GTP binding (IEA)

GTPase activity (IBA,IEA)

hydrolase activity (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (ISO)

References

Additional References at PubMed

PMID:20375059	PMID:22301074

Genomics

Comparative Map Data

RAB23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	24,388,530 - 24,438,956 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	24,387,643 - 24,421,869 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	24,318,464 - 24,367,881 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	24,928,158 - 24,977,111 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	24,928,188 - 24,962,260 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	24,425,198 - 24,474,987 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	24,526,566 - 24,576,395 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	24,658,037 - 24,707,772 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

RAB23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	57,186,992 - 57,222,307 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	57,186,992 - 57,222,848 (-)	Ensembl			hg38	GRCh38
GRCh37	6	57,051,790 - 57,087,105 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	57,161,540 - 57,195,037 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	57,161,542 - 57,194,216	NCBI
Celera	6	58,716,680 - 58,750,177 (-)	NCBI		Celera
Cytogenetic Map	6	p12.1-p11.2	NCBI
HuRef	6	56,885,847 - 56,921,168 (-)	NCBI		HuRef
CHM1_1	6	57,052,116 - 57,087,451 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	57,026,017 - 57,061,677 (-)	NCBI		T2T-CHM13v2.0

Rab23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	33,758,991 - 33,781,642 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	33,758,968 - 33,781,645 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	33,719,896 - 33,742,564 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	33,719,887 - 33,742,564 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	33,776,741 - 33,799,409 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	33,664,442 - 33,686,043 (+)	NCBI		MGSCv36	mm8
Celera	1	33,494,937 - 33,517,604 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	12.8	NCBI

Rab23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	43,440,047 - 43,463,327 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	43,440,273 - 43,463,325 (+)	Ensembl				GRCr8
mRatBN7.2	9	35,943,522 - 35,967,367 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	35,944,085 - 35,966,927 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	44,441,007 - 44,464,287 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	49,572,193 - 49,595,473 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	47,854,110 - 47,877,391 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	38,469,784 - 38,496,185 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	38,470,298 - 38,495,176 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	38,150,197 - 38,176,678 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	32,465,752 - 32,486,615 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	33,737,526 - 33,758,237 (+)	NCBI		Celera
RGSC_v3.1	9	32,470,305 - 32,486,681 (+)	NCBI
Cytogenetic Map	9	q21	NCBI

Rab23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955502	2,950,562 - 2,980,634 (+)	Ensembl
ChiLan1.0	NW_004955502	2,947,170 - 2,980,634 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	71,658,156 - 71,698,899 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	67,538,584 - 67,574,922 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	56,744,948 - 56,780,187 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	58,375,559 - 58,411,104 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	58,375,559 - 58,411,107 (-)	Ensembl			panPan2	panpan1.1

Rab23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	59,832,445 - 59,864,419 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	4,095,329 - 4,127,701 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	4,095,829 - 4,127,714 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	28,632,082 - 28,658,952 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	28,632,065 - 28,658,958 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	33,092,585 - 33,119,432 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	14,383,064 - 14,418,144 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	14,383,155 - 14,414,698 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666058	20,502,672 - 20,512,527 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624753	18,988,842 - 19,014,799 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rab23
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	109,970,486 - 109,993,299 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in RAB23
776 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005627508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038492133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038492134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038554416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038554417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038618282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038618283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038674872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038683850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038683851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002631969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002631970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002631971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005334132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005334133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005367879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005367880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005402230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005402231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005431572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005431577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005435653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005435654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000003875 ⟹ ENSCAFP00000003584

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	12	24,387,643 - 24,421,869 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000061650 ⟹ ENSCAFP00000058234

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	12	24,388,555 - 24,421,869 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000083934 ⟹ ENSCAFP00000051384

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	12	24,388,555 - 24,421,772 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845011916 ⟹ ENSCAFP00845009296

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	12	24,928,188 - 24,962,260 (+)	Ensembl

RefSeq Acc Id:

XM_005627508 ⟹ XP_005627565

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	12	24,388,530 - 24,425,132 (+)	NCBI
Dog10K_Boxer_Tasha	12	24,318,464 - 24,354,504 (+)	NCBI

Sequence:

show sequence

AGCGGCGCGTCCACGGACGAGGCGAGGCGAGGCTCCCGCGCCCAACCGTCCTCGCCGGCGTTGC
CGCCGAGACGCTGCTCCCGAGCCCCGGCCGCCAAAAAAATTTGAGAAGATCTGATCACCTGGAA
TTAAAGTTGGTTCAGAAACCTTTTCAACTGCAAAAATGTTGGAGGAAGATATGGAAGTGGCCAT
CAAGATGGTGGTTGTAGGGAATGGAGCAGTTGGAAAATCAAGTATGATACAGCGATATTGCAAA
GGCATTTTTACAAAAGACTACAAGAAAACCATTGGAGTTGATTTTTTGGAGCGACAAATCCAAG
TTAATGATGAAGATGTCAGACTAATGTTGTGGGATACAGCAGGTCAAGAGGAATTTGATGCAAT
AACAAAGGCCTACTATCGAGGAGCCCAGGCTTGTGTGCTTGTATTTTCTACCACAGACAGAGAA
TCTTTTGAAGCAATTTCCAGTTGGAGAGAGAAAGTAGTAGCTGAAGTTGGAGATATACCAACTG
TACTTGTCCAAAACAAGATTGATCTCTTAGATGATTCTTGTATAAAGAATGAGGAAGCCGAGGC
ACTGGCAAAAAAGTTAAAGCTCAGATTCTACAGAACATCAGTGAAAGAAGATCTAAATGTGACT
GAAGTTTTTAAATATTTGGCTGAAAAATACCTTCAAAAACTCAAACAGCAAATAGCTGAGGATC
CAGAATTAATGCATTCAAGTAGTAACAAAATTGGTGTCTTTAATACATCAACTGGAAGTCACTT
GGGTCAAAATTCAAGTACCCTTAATGGTGGAGATGTCATCAATCTTCGACCCAACAAACAGAGA
ACCAAGAAAAATAGAAATCCTTTTAGCAGCTGTAGCATACCCTAAAACATTTTAGGGAGGAAAA
AAAATTGAGTTATGTTGTGCAATTCAGTAAGAAATGCATCCAACTGTCATGGTATGTTACAAGT
TTTTTTTTTTTTTTTTAAGCAGACTTTGCACCTAATGGCTCTGTGAAAGTTGACAGACTTAAAT
ATTGTTCTGCAGTGCTTTTCAGGTGGAGTGAGATCTTTGGTGGAAAGATTACTGCCTTGTGGAC
TTGTTTTAATTTTGTTTTTTTTACATCAGACGAAGCTTCTCCTGTTTTTGAAGGAATGCTGTAA
AAAATGTCAAAAACAGGTTTTGCTGAATTTTAAGTGCTGGAAAACATAAATGGAATGCCCCAAA
TATATCGGTACAGATTTTAATATTATTGACCAAGGAGAGATAGCAAGCATTGTATTTCTGAAAT
TGGTCATATAGCTTTTTTGGAAAGTAGTATTGAATCCAAATACTTACAAAAAAACAATAGTGTA
AGGTAAACCCTAAATCTTGCCAGACTGCATTAGTGTATATTTGTCAATGTTACTTGTGCAATAT
CTGTATAATGTAGAATATGGAGTTATGTATGCAGATATCTGGTACTGAAGTATACTGAAGGTAT
ATTCAGTACTAAGGAAAGAGAATCTAATTCATTCATTCTTAAAATCATTTACACATTGTGTGTA
TGTTAAAAGTTTTTATTTTCAAATAAAAAATTCCAGACATATATTTTGCAAAACAAGCTCAGAT
TTTAAAAGTGCTTTGTGCCAAAAATATCATACCTAATTTTTACAGTGCTTTACTATCAGAATTT
ATATTGTTTATATCTTTTAAAAGCAGTTTTCCTCTCTGACAGGGTAGATAAAAGAGTAGAAATG
TTTAATGCTAGAGTATTTCCCAGGTGAGACTTGCTGCAAAATCTTTCTCACATGTCCATCTATA
AGCATGAGGAGCTCGTGCTGGCCAAGCCCTTATGATGTCTGGCACCCCTGCAGTTATCCCGTGG
GTCCTGTGAAATGCAGTGGTGCATCTAGCGCCTTTTTCTGCTGAAAATGCAATTTTGAACTTTT
AAGGTTATGCTATCAATTTTTTAAATGCAGAAAAGATGATCTTTTGTCTTCATCTGCATGATAG
ATTTTATAAGGCCCTGCAACTCTAAAGCATCTTTTCGTTTACACATTTTTGTATGGTATTTTAA
GATGATCACTTAAAAATTTCTAGAAACTTCGGTTTGTATAGCACTTTCTCAAGGGCTCTGTCAG
CACCACATGCAGAATAATTTCTTTTAAGAACTGATTTTCACAGTAATCACGTGGCAGAGCATAA
ATATGGTAACTTGGGACAGTAGTTTTCCAACTAAGATAATTGCATGAACTCTGTTAAAAAACGA
TTATTGTTCATCAATGACTTTGTTTTTAACCCCTCCCTATATACCTGGTTTTCGCAGGATTTCA
AGACATGTAACTTTTCCTGGAAAATGTGTCATAAATTCATTTTTCATTATTTGAACAAATGCAT
AATGTTGTATGTATTTCTTCTGTATGTTCTGTCTCTTTCTAAGTCTTACATCTGCACCATCCTC
TTCCCTTTGTCCAGATTAACATTGAAAAGAATAGAATTTTCTGGGGTATGTCCTTTTTAAGGGG
TCAAGAGTGAATGTTTGCTTTTCATAGTATGGAAATAATCTGGTATTATCTATTTTAAAGTAAT
ATAAAATATTAATTTTTATGTCACCAAGTTGACTTCACTCCCATTGCTGGCAGTGGGATAGGTG
TTGGGGGAAAAAATTCCATTCCTAACAATGGGTATCTGTTAATGATTCCTTTTTCCTTTTCTAC
TCTCTTAGAATACAGTCTCTTTAATTTTTGCACAAAACATATTTTACAGCAAATAGTTTTGTGG
TCTTTAGTAGCCAAAAAAAAAAAAAAATCATGTTATGTAATATGTTGTAGTTCTATTTCATATT
AATTAAATATGTGGGGGAAGAGATTGCTACTTTTCTATATAAAAAAGATAATCTCTCATGGTGG
TTGAAGTTTCCTGATAGTTGTAATATAATTTTATGTGTTTAGTTTTGTCCTTTTTTCTTATAAG
AACTGAGAAAGAGCTTTGTTACACATTTGAATTTTTATTTGCACTTGTGTATTTTCCACTTATG
ATTATTCATTTTAAATCACTAAGAAGGTCTGAAAATCAGTTAAATACTTTCTCAATTTAATTCT
AAAACCTAAGTCTAACCCCACCCCCAGCAGCTGGTTCAGCAGTTTAGCGACACCTTCACTACCT
GTGTCTCTGCCTCTCTCTCTCTCTCTGTGTCTCTCATGAATAAATAAATAAAATCTTAATCCCC
CCCACAAGTACCTTAATTCTTCTAAATCACTTTACTGTTAATTTGTAATGAACTACGGACACTA
AAGAAAACACTGGCTAAGACTCCAGGATGTTGTTTGTGCATTTGTACTCTCATGTACTTTTTTA
CCTGGTGGCTGGTTTCTAGTATACAGACAGAGAGCTGTGGAATGACTGCCATATTGCAGAGCCC
CCAGTTCTCCTTTCCTCTCTGTCAGCCTTACAAATTAGATAGCTTATCGAATAGCCCTTATATA
AGGCAATATACAGTTGAACCTTGGACAATGCCAGTTTGAACTGTGTGGGTCCACTTCCATGCGG
ATTTTTTACAGGACTATAAATGTATTTTTTCTTCCTTATGGTTGTCTTAATAACATTTTCTTTT
CTCCTGGCTTACTTTATAAGAATACAGTATGGAATACACACAACATACAGAATATTTGTTAATA
GACAGCTTATGTTATCAGTAGGGCTTAGTAGTTAAGTGTTAGGGGAGTCAAAAGTTATACTTGG
ATTTTTCACAGTGTGGGGGTTGGTGCTGCTTATCCCGGTGTTGTTCAAGGATCAACTGTATTTC
TGTTGTTATTAGTGCCATAAGATGAAATCCGTTGCCATTAATTAGTACTTACTATCAGGTGGGA
ACTATACAAAGTACCTTGCAAACAGTAATTTAATCTTTACAGCAATTCTATGGAGTATTATTAT
TCCTTCCCTTTTTTCAAAGGAGGAGGAGAATGAAGATCTAAGTTTGTCAGAGTCACATATTCGA
TAGCAACAAAGCCATTTTCTATCCTATTTTGTAACTATTATGTTTATATTACCCAGACATAAAA
AGATGTGCTATCTTCCATTATACTTTATAGTCTAATATATATGAATGGATTTGATACTGCTTTA
TATATGCAGTTATATTTTATGGAGGAATTACTACTGCTAGGAACATTTTCAGCGTTTAACTGTC
CTAACATAATATTGATTTCTTATTTGATGCATTTGTCTTAAAAAGAGAATTAAAATAATAAAGT
AACTATTTTTCAA

hide sequence

RefSeq Acc Id:

XM_038492133 ⟹ XP_038348061

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	12	24,425,235 - 24,461,575 (+)	NCBI

RefSeq Acc Id:

XM_038492134 ⟹ XP_038348062

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	12	24,425,198 - 24,461,575 (+)	NCBI

RefSeq Acc Id:

XM_038554416 ⟹ XP_038410344

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	12	24,658,074 - 24,694,385 (+)	NCBI

RefSeq Acc Id:

XM_038554417 ⟹ XP_038410345

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	12	24,658,037 - 24,694,385 (+)	NCBI

RefSeq Acc Id:

XM_038618282 ⟹ XP_038474210

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	12	24,526,603 - 24,562,788 (+)	NCBI

RefSeq Acc Id:

XM_038618283 ⟹ XP_038474211

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	12	24,526,566 - 24,562,788 (+)	NCBI

RefSeq Acc Id:

XM_038674872 ⟹ XP_038530800

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	12	24,318,501 - 24,354,504 (+)	NCBI

RefSeq Acc Id:

XM_038683850 ⟹ XP_038539778

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	12	24,928,195 - 24,963,724 (+)	NCBI

RefSeq Acc Id:

XM_038683851 ⟹ XP_038539779

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	12	24,928,158 - 24,963,724 (+)	NCBI

RefSeq Acc Id:

XR_005334132

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	12	24,425,235 - 24,465,838 (+)	NCBI

RefSeq Acc Id:

XR_005334133

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	12	24,425,235 - 24,474,987 (+)	NCBI

RefSeq Acc Id:

XR_005367879

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	12	24,658,074 - 24,698,591 (+)	NCBI

RefSeq Acc Id:

XR_005367880

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	12	24,658,074 - 24,707,772 (+)	NCBI

RefSeq Acc Id:

XR_005402230

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	12	24,526,603 - 24,566,995 (+)	NCBI

RefSeq Acc Id:

XR_005402231

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	12	24,526,603 - 24,576,395 (+)	NCBI

RefSeq Acc Id:

XR_005431572

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	12	24,318,501 - 24,358,712 (+)	NCBI

RefSeq Acc Id:

XR_005431577

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	12	24,318,501 - 24,367,881 (+)	NCBI

RefSeq Acc Id:

XR_005435653

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	12	24,928,195 - 24,967,927 (+)	NCBI

RefSeq Acc Id:

XR_005435654

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	12	24,928,195 - 24,977,111 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005627565	(Get FASTA)	NCBI Sequence Viewer
	XP_038348061	(Get FASTA)	NCBI Sequence Viewer
	XP_038348062	(Get FASTA)	NCBI Sequence Viewer
	XP_038410344	(Get FASTA)	NCBI Sequence Viewer
	XP_038410345	(Get FASTA)	NCBI Sequence Viewer
	XP_038474210	(Get FASTA)	NCBI Sequence Viewer
	XP_038474211	(Get FASTA)	NCBI Sequence Viewer
	XP_038530800	(Get FASTA)	NCBI Sequence Viewer
	XP_038539778	(Get FASTA)	NCBI Sequence Viewer
	XP_038539779	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000058234.1
	ENSCAFP00030008370.1
	ENSCAFP00040030342.1
	ENSCAFP00845009296
	ENSCAFP00845009296.1

RefSeq Acc Id:

XP_005627565 ⟸ XM_005627508

- UniProtKB:

A0A8C0KSU7 (UniProtKB/TrEMBL), A0A8C0MH01 (UniProtKB/TrEMBL), A0A8I3NF40 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWD
TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTVLVQNKIDLLDD
SCIKNEEAEALAKKLKLRFYRTSVKEDLNVTEVFKYLAEKYLQKLKQQIAEDPELMHSSSNKIG
VFNTSTGSHLGQNSSTLNGGDVINLRPNKQRTKKNRNPFSSCSIP

hide sequence

Ensembl Acc Id:

ENSCAFP00000051384 ⟸ ENSCAFT00000083934

Ensembl Acc Id:

ENSCAFP00000003584 ⟸ ENSCAFT00000003875

Ensembl Acc Id:

ENSCAFP00000058234 ⟸ ENSCAFT00000061650

RefSeq Acc Id:

XP_038348062 ⟸ XM_038492134

RefSeq Acc Id:

XP_038348061 ⟸ XM_038492133

RefSeq Acc Id:

XP_038474211 ⟸ XM_038618283

RefSeq Acc Id:

XP_038474210 ⟸ XM_038618282

RefSeq Acc Id:	XP_038539779 ⟸ XM_038683851
- UniProtKB:	A0A8C0KSU7 (UniProtKB/TrEMBL), A0A8C0MH01 (UniProtKB/TrEMBL), A0A8I3NF40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038539778 ⟸ XM_038683850
- UniProtKB:	A0A8C0KSU7 (UniProtKB/TrEMBL), A0A8C0MH01 (UniProtKB/TrEMBL), A0A8I3NF40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038530800 ⟸ XM_038674872
- UniProtKB:	A0A8C0KSU7 (UniProtKB/TrEMBL), A0A8C0MH01 (UniProtKB/TrEMBL), A0A8I3NF40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038410345 ⟸ XM_038554417
- UniProtKB:	A0A8C0KSU7 (UniProtKB/TrEMBL), A0A8C0MH01 (UniProtKB/TrEMBL), A0A8I3NF40 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038410344 ⟸ XM_038554416
- UniProtKB:	A0A8C0KSU7 (UniProtKB/TrEMBL), A0A8C0MH01 (UniProtKB/TrEMBL), A0A8I3NF40 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845009296 ⟸ ENSCAFT00845011916

Promoters

RGD ID:

13685476

Promoter ID:

EPDNEW_C3544

Type:

initiation region

Name:

RAB23_1

Description:

RAB23, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	12	24,388,528 - 24,388,588	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000002459	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030005238	UniProtKB/TrEMBL
	ENSCAFG00040018839	UniProtKB/TrEMBL
	ENSCAFG00845006719	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000061650.2	UniProtKB/TrEMBL
	ENSCAFT00030009576.1	UniProtKB/TrEMBL
	ENSCAFT00040034845.1	UniProtKB/TrEMBL
	ENSCAFT00845011916	ENTREZGENE
	ENSCAFT00845011916.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Rab	UniProtKB/TrEMBL
	Rab23	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
KEGG Report	cfa:481854	UniProtKB/TrEMBL
NCBI Gene	RAB23	ENTREZGENE
PANTHER	RAS-RELATED PROTEIN RAB	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C0KSU7	ENTREZGENE
	A0A8C0MH01	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NF40	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:45263	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)