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Gene: COXFA4 (cytochrome c oxidase associated subunit FA4) Pan paniscus

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Symbol:

COXFA4

Name:

cytochrome c oxidase associated subunit FA4

RGD ID:

11765090

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 21 (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cytochrome c oxidase subunit NDUFA4; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa; NDUFA4; NDUFA4 mitochondrial complex associated; NDUFA4, mitochondrial complex associated

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	15,760,949 - 15,767,672 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	64,085,666 - 64,092,390 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	11,585,054 - 11,591,775 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	10,932,727 - 10,939,949 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

mitochondrial complex IV deficiency nuclear type 21 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrial membrane (ISO)

mitochondrion (ISO)

respiratory chain complex I (ISO)

respiratory chain complex IV (ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

References

Genomics

Comparative Map Data

COXFA4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	15,760,949 - 15,767,672 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	64,085,666 - 64,092,390 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	11,585,054 - 11,591,775 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	10,932,727 - 10,939,949 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

COXFA4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	10,931,943 - 10,940,153 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	10,931,943 - 10,940,531 (-)	Ensembl			hg38	GRCh38
GRCh37	7	10,971,570 - 10,979,780 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	10,939,340 - 10,946,338 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	10,746,054 - 10,753,053	NCBI
Celera	7	10,947,593 - 10,954,592 (-)	NCBI		Celera
Cytogenetic Map	7	p21.3	NCBI
HuRef	7	10,829,724 - 10,838,039 (-)	NCBI		HuRef
CHM1_1	7	10,972,141 - 10,980,374 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	11,062,535 - 11,070,743 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	11,025,124 - 11,033,358 (-)	NCBI

Coxfa4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	11,900,371 - 11,907,449 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	11,900,291 - 11,907,496 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	11,900,372 - 11,907,450 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	11,900,292 - 11,907,497 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	11,850,373 - 11,857,446 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	11,850,373 - 11,857,446 (-)	NCBI		MGSCv36	mm8
Celera	6	11,992,912 - 11,999,985 (-)	NCBI		Celera
Cytogenetic Map	6	A1	NCBI
cM Map	6	5.01	NCBI

Coxfa4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	40,968,391 - 40,975,559 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	40,968,391 - 40,975,559 (-)	Ensembl				GRCr8
mRatBN7.2	4	40,002,216 - 40,009,384 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	40,002,216 - 40,023,920 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	44,975,238 - 44,982,402 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	40,901,442 - 40,908,606 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	39,304,957 - 39,312,121 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	42,704,549 - 42,711,713 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	40,134,333 - 40,141,497 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	40,697,757 - 40,704,921 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	40,519,534 - 40,526,698 (-)	NCBI		F344_StmMcwi
Rnor_6.0	4	38,233,680 - 38,240,848 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	38,233,680 - 38,240,848 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	38,070,978 - 38,078,251 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	37,125,782 - 37,133,055 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	35,414,376 - 35,421,532 (-)	NCBI		Celera
Cytogenetic Map	4	q21	NCBI

Coxfa4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	17,502,272 - 17,509,517 (-)	Ensembl
ChiLan1.0	NW_004955432	17,502,272 - 17,509,517 (-)	NCBI	ChiLan1.0	ChiLan1.0

COXFA4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	25,887,204 - 25,893,746 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	25,468,815 - 25,475,355 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	25,696,535 - 25,703,079 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	14	25,864,709 - 25,871,252 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	25,594,037 - 25,600,585 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	25,847,856 - 25,854,404 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Coxfa4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	39,433,348 - 39,440,232 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936761	554,028 - 560,901 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936761	554,025 - 560,913 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COXFA4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	80,636,929 - 80,644,315 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	80,637,005 - 80,644,067 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	88,555,979 - 88,563,046 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COXFA4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	47,245,396 - 47,252,145 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	47,245,170 - 47,252,730 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	57,188,514 - 57,195,774 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Coxfa4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624827	8,366,027 - 8,375,881 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624827	8,366,597 - 8,373,881 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Coxfa4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	126,886,617 - 126,893,618 (+)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003824994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003824994 ⟹ XP_003825042

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	15,760,949 - 15,767,672 (-)	NCBI
NHGRI_mPanPan1	7	64,085,666 - 64,092,390 (-)	NCBI
Mhudiblu_PPA_v0	7	11,585,054 - 11,591,775 (-)	NCBI
PanPan1.1	7	10,932,727 - 10,939,949 (-)	NCBI

Sequence:

show sequence

CGACAGCCTAACACAGGAAGCAGCTGCAGTCTTCTCAAACCGCAGCCGCTGACCTTAGCGGCAA
GAGACCCGACCTGCCCTCCAGGCGCCCGGCGCTCAGCTCCCAGAGGCGCCGCGCAGCTCCCTCA
GCGGCAGTCACAGCTGGCCAGCGCGCCCCGGCACGCGCGCCCCCAGGGCCTCTGCGCGCGGACC
CAGCTCTCAGGCGCCGCGGAAGAGGCCCCTACTCACGGAACGCGCGGCCCGTGGGCCCCAGCGC
CGACCGCATTCCTCAGTACGTGGCACCCTTGGAAAGTGCCTGTCTGGTCAATCGAAGAGTCCTC
GTTTCGACCAAAAAAGTTCCCCTCAGAAATATGCATAGCACGGCAATGAAGGGGTTTTCACTAT
GAAGTGGAATGATGATGGTCCGACCAGGTCAGGACGAACATATGAGGGGTTAGATCTAAGCAGG
CACTGTTAAAGACAGTCGCATCCGGGCCCTCCTACCGCAAGCTGCCCTCCCAGCCAAGGGTCCT
TCAGGTAGGAGGTCCTGGGTGACTTTGGAAGTCCGCAGTGTCTCATTGCAGATAATTTTTAGCT
TAGGGCCTGGTGGCTAGGTAGGTTCTGTCCTTTCCAATCGGAGACCTCTGCCGCAAACATGCTC
CGCCAGATCATCGGTCAGGCCAAGAAGCATCCGAGCTTGATCCCCCTCTTTGTATTTATTGGAA
CTGGAGCTACTGGAGCGACACTGTATCTCTTGCGTCTGGCATTGTTCAATCCAGATGTTTGTTG
GGACAGAAATAACCCAGAGCCCTGGAACAAACTGGGTCCCAATGATCAATACAAGTTCTACTCA
GTGAATGTGGATTACAGCAAGCTGAAGAAGGAACGTCCAGATTTCTAAATGAAATGTTTCACTA
TAACGCTGCTTTAGAATGAAGGTCTTCCAGAAGCCACATCCGCACAATTTTCCACTTAACCAGG
AAATATTTCTCCTCTAAATGCATGAAATCATGTTGGAGATCTCTATTGTAATCTCTATTAGAGG
TTACACTGATTAAATCAATAAATAACTGAAACTTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003825042	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00050017539

RefSeq Acc Id:	XP_003825042 ⟸ XM_003824994
- Sequence:	show sequence MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNNPEPWNKLGPNDQYKF YSVNVDYSKLKKERPDF hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00050013230	ENTREZGENE
Ensembl Transcript	ENSPPAT00050027793	ENTREZGENE
NCBI Gene	NDUFA4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-07-15	COXFA4	cytochrome c oxidase associated subunit FA4	NDUFA4	NDUFA4 mitochondrial complex associated	Symbol and/or name change	5135510	APPROVED
2019-01-29	NDUFA4	NDUFA4 mitochondrial complex associated		NDUFA4, mitochondrial complex associated	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM