GWAS1592910_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1592910_H (alpha angle measurement QTL GWAS1592910 (human)) Homo sapiens

Symbol: GWAS1592910_H
Name: alpha angle measurement QTL GWAS1592910 (human)
RGD ID: 597496836
Trait: femur morphology trait   (VT:0000559)    
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381551,230,013 - 51,230,014RGD_MAPPER_PIPELINEGRCh38
GRCh371551,522,210 - 51,522,211RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1592910_HHumanfemur morphology trait  IAGPrs146939415405850206 GWAS_CATALOGPMID:36662418

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1592910_HHumanalpha angle measurement  IAGPrs146939415405850206 GWAS_CATALOGPMID:36662418

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
12791128MIR4713HGMIR4713 host gene155103748851293912Human
11084865PIRC66piwi-interacting RNA cluster 66155103758451322397Human
1606587CYP19A1cytochrome P450 family 19 subfamily A member 1155120805751338596Human


Peak: (rs146939415)
Human AssemblyChrPosition (strand)Source
GRCh381551,230,013 - 51,230,014RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407128309GWAS777285_Hbody height QTL GWAS777285 (human)4e-24body height155123001351230014Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597496836GWAS1592910_Halpha angle measurement QTL GWAS1592910 (human)2e-08femur morphology trait (VT:0000559)155123001351230014Human
596967727GWAS1087246_Halpha angle measurement QTL GWAS1087246 (human)2e-08alpha angle measurement155123001351230014Human
406953389GWAS602365_Halpha angle measurement QTL GWAS602365 (human)2e-08alpha angle measurement155123001351230014Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
596979402GWAS1098921_Hbody height QTL GWAS1098921 (human)6e-23body height155123001351230014Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1592910_H GCST90129635 Alpha angle 44,214 European ancestry individuals C 0.01 2E-8 7.699 rs146939415 0.17 alpha angle measurement (EFO:0020071)
 PMID:36662418
GWAS1721789_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 4E-24 23.398 rs146939415 N/A body height (OBA:VT0001253)
 PMID:30595370
GWAS1752446_H GCST90435412 Height 404,900 European ancestry individuals ? NR 6E-23 22.222 rs146939415 0.0747704 body height (OBA:VT0001253)
 PMID:39134668
Database
Acc Id
Source(s)
GWAS Catalog GCST90129635 GWAS Catalog

Note Type Note Reference