CYP19A1 (cytochrome P450 family 19 subfamily A member 1) - Rat Genome Database

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Gene: CYP19A1 (cytochrome P450 family 19 subfamily A member 1) Homo sapiens
Analyze
Symbol: CYP19A1
Name: cytochrome P450 family 19 subfamily A member 1
RGD ID: 1606587
HGNC Page HGNC
Description: Exhibits aromatase activity and heme binding activity. Involved in androgen catabolic process and positive regulation of estradiol secretion. Localizes to endoplasmic reticulum. Implicated in several diseases, including aromatase excess syndrome; bladder neck obstruction; ovarian disease (multiple); prostate disease (multiple); and urethral obstruction. Biomarker of Alzheimer's disease and endometriosis.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ARO; ARO1; aromatase; CPV1; CYAR; CYP19; CYPXIX; cytochrome P-450AROM; cytochrome P450 19A1; cytochrome P450, family 19, subfamily A, polypeptide 1; cytochrome P450, subfamily XIX (aromatization of androgens); estrogen synthase; estrogen synthetase; flavoprotein-linked monooxygenase; MGC104309; microsomal monooxygenase; P-450AROM
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1551,208,057 - 51,338,601 (-)EnsemblGRCh38hg38GRCh38
GRCh381551,208,057 - 51,338,596 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371551,500,254 - 51,630,793 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361549,288,961 - 49,418,086 (-)NCBINCBI36hg18NCBI36
Celera1528,393,650 - 28,524,194 (-)NCBI
Cytogenetic Map15q21.2NCBI
HuRef1528,330,314 - 28,460,872 (-)NCBIHuRef
CHM1_11551,618,344 - 51,748,904 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(E)-thiamethoxam  (EXP)
(S)-naringenin  (EXP,ISO)
(S)-nicotine  (EXP,ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP,ISO)
1,1,1-Trichloro-2-(4-hydroxyphenyl)-2-(4-methoxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (EXP)
1-benzofuran  (EXP)
1-naphthylamine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (EXP)
2,4,6-trichlorophenol  (EXP)
2,4-dibromophenol  (EXP)
2-bromophenol  (EXP)
2-Ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine  (EXP)
3',5'-cyclic AMP  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,3'-diindolylmethane  (EXP)
3,4-dichloroaniline  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(5,6,7,8-tetrahydroimidazo[1,5-a]pyridin-5-yl)benzonitrile  (EXP)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (EXP)
4-Hydroxy-N-desmethyltamoxifen  (EXP)
4-nitrophenol  (ISO)
4-nonylphenol  (ISO)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (EXP)
7-hydroxyflavanone  (EXP)
7-hydroxyflavone  (EXP)
8-Br-cAMP  (EXP,ISO)
9-cis-retinoic acid  (EXP,ISO)
acetaldehyde  (ISO)
afimoxifene  (EXP)
Aflatoxicol  (EXP)
aflatoxin B1  (EXP)
AH23848  (EXP)
albuterol  (EXP)
aldrin  (EXP)
all-trans-retinoic acid  (EXP)
allethrin  (ISO)
alpha-naphthoflavone  (EXP)
alternariol  (EXP)
aminoglutethimide  (EXP)
amitraz  (ISO)
amlodipine  (EXP)
ammonium chloride  (ISO)
amoxicillin  (EXP)
amphetamine  (ISO)
anastrozole  (EXP)
androgen antagonist  (ISO)
androst-4-ene-3,17-dione  (EXP,ISO)
androstane-3,17-diol  (ISO)
aniline  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP,ISO)
anthracene  (EXP)
apigenin  (EXP)
Aroclor 1254  (EXP,ISO)
arotinoid acid  (EXP)
atorvastatin calcium  (ISO)
atrazine  (EXP,ISO)
benomyl  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzofurans  (EXP)
beta-naphthoflavone  (EXP)
bezafibrate  (EXP,ISO)
bicalutamide  (ISO)
bifenthrin  (EXP,ISO)
bifonazole  (EXP)
biochanin A  (EXP)
biphenyl-4-ol  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bitertanol  (ISO)
Butylbenzyl phthalate  (EXP,ISO)
Butylparaben  (EXP,ISO)
cadmium atom  (EXP)
caffeine  (ISO)
calcitriol  (EXP)
cannabidiol  (EXP)
carbendazim  (EXP)
carmustine  (EXP)
celecoxib  (EXP)
chlordecone  (EXP,ISO)
chlorogenic acid  (ISO)
chlorpyrifos  (EXP)
Chorionic gonadotropin  (ISO)
chromium(6+)  (ISO)
chrysin  (EXP)
citalopram  (EXP)
clotrimazole  (EXP)
cocaine  (ISO)
colforsin daropate hydrochloride  (EXP,ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
cyanamide  (ISO)
cycloheximide  (EXP,ISO)
cyclosporin A  (EXP)
cyhalothrin  (ISO)
cyhexatin  (EXP)
cypermethrin  (EXP,ISO)
cyproconazole  (EXP)
cyproterone  (EXP)
daidzein  (EXP)
DDE  (EXP,ISO)
DDT  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dehydroepiandrosterone  (EXP)
deoxynivalenol  (EXP)
dexamethasone  (EXP)
dibutyl phthalate  (EXP,ISO)
dibutylstannane  (EXP)
dichlorine  (ISO)
dicofol  (EXP)
dicrotophos  (EXP)
dienogest  (EXP)
diethyl phthalate  (EXP,ISO)
diethylstilbestrol  (EXP,ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dimethoate  (ISO)
dipentyl phthalate  (ISO)
disulfiram  (ISO)
doxorubicin  (EXP,ISO)
E-4031  (ISO)
endosulfan  (EXP)
enilconazole  (EXP,ISO)
enniatin  (EXP)
Enterolactone  (EXP)
enzacamene  (ISO)
epoxiconazole  (EXP,ISO)
equol  (ISO)
erlotinib hydrochloride  (EXP)
erythrosin B  (ISO)
estriol  (EXP)
estrone  (EXP)
ethanol  (EXP,ISO)
ethosuximide  (EXP)
exemestane  (EXP)
farnesol  (ISO)
fenarimol  (EXP,ISO)
fenbuconazole  (EXP)
fentin chloride  (EXP)
fentin hydroxide  (EXP)
fenvalerate  (ISO)
finasteride  (EXP,ISO)
fingolimod hydrochloride  (EXP)
flavanones  (EXP)
flavone  (EXP)
flavones  (EXP)
flavonoids  (EXP,ISO)
fluconazole  (EXP)
fluoxetine  (EXP)
flusilazole  (EXP)
flutamide  (ISO)
fluvoxamine  (EXP)
formestane  (EXP,ISO)
fulvestrant  (EXP)
gallic acid  (ISO)
gamma-hexachlorocyclohexane  (EXP)
Geniposidic acid  (ISO)
genistein  (EXP,ISO)
glyphosate  (EXP,ISO)
heptachlor  (EXP)
herbicide  (EXP,ISO)
hesperetin  (EXP)
hexaconazole  (EXP)
HT-2 toxin  (EXP)
ibuprofen  (EXP)
imidacloprid  (EXP)
indometacin  (EXP,ISO)
iodoacetic acid  (ISO)
iprodione  (EXP)
isoliquiritigenin  (ISO)
ketoconazole  (EXP)
L-ascorbic acid  (EXP)
lamotrigine  (EXP)
lead diacetate  (ISO)
leflunomide  (EXP)
letrozole  (EXP,ISO)
leuprolide  (ISO)
levetiracetam  (EXP)
linuron  (ISO)
lipopolysaccharide  (EXP)
LY294002  (EXP,ISO)
malathion  (ISO)
medroxyprogesterone acetate  (EXP)
melamine  (EXP)
melatonin  (EXP,ISO)
metformin  (ISO)
methadone  (EXP)
methomyl  (EXP)
methotrexate  (EXP,ISO)
methoxychlor  (EXP,ISO)
methylmercury chloride  (EXP)
methylparaben  (EXP)
methyltestosterone  (EXP)
metolachlor  (EXP)
miconazole  (EXP)
microcystin-LR  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monobenzyl phthalate  (EXP,ISO)
Monobutylphthalate  (EXP)
monoethyl phthalate  (EXP,ISO)
mycotoxin  (EXP)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP,ISO)
N-Nitrosopyrrolidine  (EXP)
nandrolone  (EXP)
naphthalene  (EXP,ISO)
nicotine  (EXP,ISO)
Niflumic acid  (EXP)
nimesulide  (EXP,ISO)
Nonylphenol  (EXP)
NS-398  (EXP)
obeticholic acid  (EXP)
ochratoxin A  (EXP)
oleuropein  (EXP)
Oxadiazon  (EXP)
oxcarbazepine  (EXP)
oxiconazole  (EXP)
oxybenzone  (ISO)
ozone  (ISO)
p-tert-Amylphenol  (ISO)
paclitaxel  (EXP)
paracetamol  (EXP,ISO)
parathion-methyl  (EXP)
paroxetine  (EXP)
pasireotide  (ISO)
pentachlorophenol  (EXP)
perflubron  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenanthrene  (EXP)
phenobarbital  (EXP)
phenytoin  (EXP)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
pirimicarb  (EXP)
pirinixic acid  (ISO)
piroxicam  (EXP)
potassium dichromate  (ISO)
prochloraz  (EXP,ISO)
procymidone  (ISO)
profenofos  (ISO)
progesterone  (EXP,ISO)
propamocarb  (EXP)
propazine  (EXP)
propiconazole  (EXP,ISO)
propylparaben  (EXP)
prostaglandin E2  (EXP,ISO)
prostaglandin F2alpha  (ISO)
pyrene  (EXP)
quercetin  (EXP,ISO)
raloxifene  (EXP)
resveratrol  (EXP,ISO)
rolipram  (EXP)
rose bengal  (ISO)
rotenone  (EXP)
rottlerin  (EXP)
rutin  (ISO)
SB-239063  (ISO)
SC-58125  (EXP)
semicarbazide  (ISO)
serpentine asbestos  (EXP)
sertraline  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
simazine  (EXP)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
T-2 toxin  (EXP)
tamoxifen  (EXP)
tebuconazole  (EXP)
terbutylazine  (ISO)
testolactone  (EXP)
testosterone  (EXP,ISO)
testosterone enanthate  (ISO)
thiacloprid  (EXP)
thiamethoxam  (EXP)
tiagabine  (EXP)
titanium dioxide  (ISO)
toxaphene  (EXP)
triadimefon  (EXP)
tributylstannane  (EXP,ISO)
Tributyltin oxide  (EXP)
triclosan  (ISO)
triflusulfuron-methyl  (EXP)
triphenylstannane  (EXP,ISO)
tris(2-butoxyethyl) phosphate  (EXP)
tris(2-chloroethyl) phosphate  (EXP)
troglitazone  (EXP,ISO)
trovafloxacin  (EXP)
U-73122  (EXP)
urethane  (EXP)
valproic acid  (EXP)
vecuronium bromide  (EXP)
vinclozolin  (EXP,ISO)
vitamin E  (ISO)
vorozole  (EXP)
zearalenone  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adrenal gland development  (ISO)
androgen catabolic process  (IDA)
androgen metabolic process  (ISO)
bile acid metabolic process  (ISO)
biphenyl metabolic process  (ISO)
bone development  (ISO)
C21-steroid hormone metabolic process  (ISO)
calcineurin-mediated signaling  (ISO)
cellular response to fibroblast growth factor stimulus  (ISO)
cellular response to follicle-stimulating hormone stimulus  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to gonadotropin stimulus  (ISO)
cellular response to hydrostatic pressure  (ISO)
dibenzo-p-dioxin metabolic process  (ISO)
electron transport chain  (IEA)
estrogen biosynthetic process  (ISO,TAS)
female genitalia development  (ISO)
female gonad development  (IBA,ISO)
granulocyte differentiation  (ISO)
hippocampus development  (ISO)
hypothalamus development  (ISO)
luteinization  (ISO)
male gonad development  (ISO)
mammary gland development  (ISO)
melatonin metabolic process  (ISO)
negative regulation of bone resorption  (ISO)
negative regulation of chronic inflammatory response  (ISO)
negative regulation of macrophage chemotaxis  (ISO)
phthalate metabolic process  (ISO)
positive regulation of estradiol secretion  (IDA)
prostate gland growth  (ISO)
regulation of synapse structure or activity  (ISO)
response to cesium ion  (ISO)
response to drug  (ISO)
response to estradiol  (IBA,ISO)
response to estrogen  (ISO)
response to herbicide  (ISO)
response to ionizing radiation  (ISO)
response to metal ion  (ISO)
response to morphine  (ISO)
response to organic cyclic compound  (ISO)
response to testosterone  (ISO)
steroid biosynthetic process  (TAS)
sterol metabolic process  (TAS)
testosterone biosynthetic process  (ISO)
uterus development  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
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13. Manigrasso MB, etal., Am J Physiol Renal Physiol. 2012 May 1;302(9):F1203-9. doi: 10.1152/ajprenal.00569.2011. Epub 2012 Feb 1.
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20. OMIM Disease Annotation Pipeline
21. Payne AH and Hales DB, Endocr Rev. 2004 Dec;25(6):947-70.
22. Pinilla L, etal., Endocrinology. 2009 Jun;150(6):2889-97. Epub 2009 Feb 19.
23. Pipeline to import KEGG annotations from KEGG into RGD
24. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
25. RGD automated import pipeline for gene-chemical interactions
26. RGD automated import pipeline for human HPO-to-gene-to-disease annotations
27. Riancho JA, etal., J Clin Endocrinol Metab. 2007 Feb;92(2):660-5. Epub 2006 Nov 21.
28. Riancho JA, etal., Osteoarthritis Cartilage. 2010 Jul;18(7):927-33. doi: 10.1016/j.joca.2010.04.002. Epub 2010 Apr 22.
29. Santen RJ, etal., Ann Intern Med. 1982 Jan;96(1):94-101.
30. Soljancic A, etal., Am J Physiol Regul Integr Comp Physiol. 2013 Apr 3.
31. Streng T, etal., J Urol. 2002 Jul;168(1):298-302.
32. Ugur PK, etal., Eur J Pharmacol. 2010 Nov 27.
33. Wang H, etal., Mol Hum Reprod. 2011 Jun;17(6):386-91. doi: 10.1093/molehr/gar007. Epub 2011 Jan 31.
34. Wu IC, etal., Neoplasia. 2011 Apr;13(4):386-92. doi: 10.1593/neo.101722.
35. Xia X, etal., Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2013 Jan;38(1):54-9. doi: 10.3969/j.issn.1672-7347.2013.01.010.
36. Xiong DH, etal., J Bone Miner Res. 2006 Nov;21(11):1678-95.
Additional References at PubMed
PMID:1371509   PMID:1372568   PMID:1472013   PMID:1724289   PMID:1825497   PMID:2040633   PMID:2171939   PMID:2541021   PMID:2691883   PMID:2808431   PMID:2848247   PMID:2973313  
PMID:3018730   PMID:3390233   PMID:3653507   PMID:3964273   PMID:7682836   PMID:7690033   PMID:8090165   PMID:8117272   PMID:8143890   PMID:8170477   PMID:8248245   PMID:8265607  
PMID:8477708   PMID:8530621   PMID:9177373   PMID:9211678   PMID:9528941   PMID:9696881   PMID:10566648   PMID:10837748   PMID:11076863   PMID:11140838   PMID:11181459   PMID:11216915  
PMID:11232039   PMID:11256614   PMID:11344237   PMID:11469726   PMID:11571725   PMID:11595700   PMID:11756225   PMID:11826265   PMID:11850203   PMID:11850205   PMID:11850206   PMID:11850208  
PMID:11850209   PMID:11850210   PMID:11850219   PMID:11850220   PMID:11850221   PMID:11850222   PMID:11850224   PMID:11850225   PMID:11850230   PMID:11850233   PMID:11850235   PMID:11897504  
PMID:11903314   PMID:11904449   PMID:11925378   PMID:11927588   PMID:11935306   PMID:11997208   PMID:12036913   PMID:12053085   PMID:12154211   PMID:12160997   PMID:12161013   PMID:12161505  
PMID:12164325   PMID:12204674   PMID:12213901   PMID:12351690   PMID:12370109   PMID:12385014   PMID:12428207   PMID:12451990   PMID:12462076   PMID:12462077   PMID:12466340   PMID:12477932  
PMID:12489562   PMID:12517592   PMID:12592380   PMID:12602902   PMID:12606587   PMID:12618873   PMID:12620480   PMID:12639945   PMID:12690088   PMID:12705475   PMID:12720534   PMID:12734209  
PMID:12736278   PMID:12759877   PMID:12768436   PMID:12788892   PMID:12839940   PMID:12843146   PMID:12846271   PMID:12864794   PMID:12914527   PMID:12917334   PMID:12944421   PMID:14508827  
PMID:14517714   PMID:14580722   PMID:14593077   PMID:14602139   PMID:14631363   PMID:14634838   PMID:14714492   PMID:14715870   PMID:14744739   PMID:14747179   PMID:14973387   PMID:14981949  
PMID:14990865   PMID:15046111   PMID:15072827   PMID:15072828   PMID:15074077   PMID:15079018   PMID:15083376   PMID:15083377   PMID:15083380   PMID:15083381   PMID:15126575   PMID:15128046  
PMID:15132727   PMID:15177662   PMID:15181061   PMID:15183689   PMID:15199113   PMID:15207764   PMID:15229337   PMID:15241822   PMID:15298966   PMID:15319333   PMID:15330195   PMID:15358790  
PMID:15364411   PMID:15449726   PMID:15489336   PMID:15582747   PMID:15613678   PMID:15640252   PMID:15668497   PMID:15677755   PMID:15688015   PMID:15695318   PMID:15748828   PMID:15774541  
PMID:15788666   PMID:15794932   PMID:15800924   PMID:15802318   PMID:15840311   PMID:15862960   PMID:15862961   PMID:15862962   PMID:15955695   PMID:16019206   PMID:16020944   PMID:16024248  
PMID:16039845   PMID:16045239   PMID:16086586   PMID:16103457   PMID:16109840   PMID:16128984   PMID:16146740   PMID:16199862   PMID:16202920   PMID:16213843   PMID:16232327   PMID:16244490  
PMID:16251630   PMID:16251760   PMID:16260521   PMID:16269961   PMID:16287071   PMID:16302261   PMID:16303757   PMID:16306085   PMID:16322405   PMID:16344016   PMID:16344560   PMID:16381901  
PMID:16392624   PMID:16395678   PMID:16402077   PMID:16406421   PMID:16418790   PMID:16424004   PMID:16426763   PMID:16467490   PMID:16473000   PMID:16498360   PMID:16498361   PMID:16498363  
PMID:16498364   PMID:16541304   PMID:16556483   PMID:16566930   PMID:16595205   PMID:16604491   PMID:16608396   PMID:16621515   PMID:16634644   PMID:16641167   PMID:16648498   PMID:16684355  
PMID:16691199   PMID:16723309   PMID:16730930   PMID:16733710   PMID:16739881   PMID:16741831   PMID:16751776   PMID:16767510   PMID:16782804   PMID:16793950   PMID:16798289   PMID:16850246  
PMID:16894362   PMID:16895991   PMID:16896040   PMID:16930994   PMID:16949385   PMID:16949391   PMID:16964243   PMID:16977255   PMID:16997132   PMID:17004113   PMID:17065579   PMID:17066438  
PMID:17119036   PMID:17158756   PMID:17167982   PMID:17176215   PMID:17187946   PMID:17216495   PMID:17219197   PMID:17325027   PMID:17331471   PMID:17336977   PMID:17359589   PMID:17372263  
PMID:17391072   PMID:17400043   PMID:17404019   PMID:17405842   PMID:17415442   PMID:17482958   PMID:17507620   PMID:17507624   PMID:17517397   PMID:17562079   PMID:17574328   PMID:17584767  
PMID:17588204   PMID:17589376   PMID:17595315   PMID:17615053   PMID:17646720   PMID:17657731   PMID:17661084   PMID:17662285   PMID:17678915   PMID:17681675   PMID:17682677   PMID:17687621  
PMID:17704407   PMID:17766065   PMID:17827443   PMID:17893373   PMID:17953943   PMID:17962916   PMID:17975727   PMID:17979523   PMID:17989043   PMID:17989068   PMID:18030614   PMID:18048499  
PMID:18049890   PMID:18086758   PMID:18157729   PMID:18159088   PMID:18163429   PMID:18181018   PMID:18182446   PMID:18199708   PMID:18201819   PMID:18245543   PMID:18274619   PMID:18281655  
PMID:18299793   PMID:18305346   PMID:18426832   PMID:18437511   PMID:18445666   PMID:18467089   PMID:18483177   PMID:18483761   PMID:18491956   PMID:18501301   PMID:18505907   PMID:18510611  
PMID:18512790   PMID:18559914   PMID:18568448   PMID:18593984   PMID:18595017   PMID:18601603   PMID:18614276   PMID:18614591   PMID:18617186   PMID:18622258   PMID:18629629   PMID:18636124  
PMID:18667686   PMID:18676680   PMID:18767927   PMID:18817841   PMID:18818748   PMID:18820009   PMID:18822378   PMID:18847535   PMID:18930188   PMID:18941892   PMID:18941913   PMID:18955734  
PMID:18962445   PMID:18980759   PMID:19015200   PMID:19019335   PMID:19022561   PMID:19064562   PMID:19064572   PMID:19064581   PMID:19083124   PMID:19093296   PMID:19107851   PMID:19116238  
PMID:19124504   PMID:19124506   PMID:19129847   PMID:19137777   PMID:19152063   PMID:19158807   PMID:19159688   PMID:19170196   PMID:19172223   PMID:19174490   PMID:19185610   PMID:19194457  
PMID:19240151   PMID:19282383   PMID:19299445   PMID:19324338   PMID:19340622   PMID:19366906   PMID:19389254   PMID:19415745   PMID:19419293   PMID:19438456   PMID:19445691   PMID:19453261  
PMID:19469636   PMID:19470632   PMID:19478482   PMID:19491387   PMID:19493871   PMID:19500729   PMID:19505920   PMID:19514368   PMID:19527514   PMID:19549443   PMID:19551860   PMID:19555469  
PMID:19556341   PMID:19558171   PMID:19570444   PMID:19573564   PMID:19574343   PMID:19577618   PMID:19589174   PMID:19591804   PMID:19598235   PMID:19604497   PMID:19625176   PMID:19630952  
PMID:19639193   PMID:19692168   PMID:19776291   PMID:19782135   PMID:19789370   PMID:19800002   PMID:19800101   PMID:19805543   PMID:19808095   PMID:19815003   PMID:19818337   PMID:19879925  
PMID:19883757   PMID:19896534   PMID:19906189   PMID:19906814   PMID:19913121   PMID:19921206   PMID:19933466   PMID:19952760   PMID:19956635   PMID:19969081   PMID:20004389   PMID:20015405  
PMID:20026603   PMID:20030115   PMID:20048079   PMID:20052540   PMID:20053928   PMID:20060879   PMID:20064870   PMID:20072949   PMID:20133979   PMID:20140262   PMID:20144226   PMID:20148360  
PMID:20164038   PMID:20164294   PMID:20173016   PMID:20184498   PMID:20186154   PMID:20189936   PMID:20193327   PMID:20200332   PMID:20211687   PMID:20214802   PMID:20231365   PMID:20300828  
PMID:20305046   PMID:20346360   PMID:20351196   PMID:20381444   PMID:20385561   PMID:20430378   PMID:20432167   PMID:20453000   PMID:20505544   PMID:20526739   PMID:20539301   PMID:20546829  
PMID:20586553   PMID:20588246   PMID:20588308   PMID:20628086   PMID:20628746   PMID:20634197   PMID:20655525   PMID:20668023   PMID:20688833   PMID:20716560   PMID:20729390   PMID:20734064  
PMID:20797716   PMID:20819792   PMID:20881004   PMID:20881960   PMID:20932310   PMID:20937744   PMID:20960227   PMID:21125383   PMID:21154336   PMID:21170323   PMID:21188138   PMID:21198743  
PMID:21217768   PMID:21251330   PMID:21269619   PMID:21296134   PMID:21300759   PMID:21319151   PMID:21319995   PMID:21320735   PMID:21377485   PMID:21392518   PMID:21392519   PMID:21392520  
PMID:21414724   PMID:21479914   PMID:21511357   PMID:21622727   PMID:21676395   PMID:21757507   PMID:21771722   PMID:21807013   PMID:21873635   PMID:21939764   PMID:21948762   PMID:21952832  
PMID:21972004   PMID:22057025   PMID:22079757   PMID:22089263   PMID:22104650   PMID:22106445   PMID:22119029   PMID:22130322   PMID:22160249   PMID:22169755   PMID:22185650   PMID:22217837  
PMID:22237979   PMID:22300440   PMID:22315456   PMID:22320986   PMID:22331461   PMID:22335023   PMID:22384274   PMID:22407818   PMID:22426781   PMID:22448795   PMID:22492871   PMID:22508516  
PMID:22511967   PMID:22578533   PMID:22633539   PMID:22634420   PMID:22638611   PMID:22675492   PMID:22731640   PMID:22759564   PMID:22773874   PMID:22843875   PMID:22848710   PMID:22887836  
PMID:22889864   PMID:22902617   PMID:22915343   PMID:22982181   PMID:23001776   PMID:23029457   PMID:23085504   PMID:23090135   PMID:23093430   PMID:23110082   PMID:23116507   PMID:23122578  
PMID:23129173   PMID:23178495   PMID:23229009   PMID:23239821   PMID:23252370   PMID:23253631   PMID:23340254   PMID:23342035   PMID:23350368   PMID:23400010   PMID:23438603   PMID:23456168  
PMID:23461365   PMID:23518928   PMID:23540392   PMID:23584792   PMID:23599027   PMID:23625277   PMID:23625281   PMID:23635391   PMID:23660593   PMID:23661022   PMID:23669293   PMID:23700878  
PMID:23727336   PMID:23729401   PMID:23736221   PMID:23747729   PMID:23748068   PMID:23809139   PMID:23846226   PMID:23873111   PMID:23893151   PMID:23932299   PMID:24037887   PMID:24049095  
PMID:24064691   PMID:24065098   PMID:24157654   PMID:24242679   PMID:24285681   PMID:24324964   PMID:24347287   PMID:24349198   PMID:24402127   PMID:24411031   PMID:24430361   PMID:24448104  
PMID:24485503   PMID:24556528   PMID:24582702   PMID:24590773   PMID:24612204   PMID:24621381   PMID:24645879   PMID:24654751   PMID:24705274   PMID:24803183   PMID:24803578   PMID:24836190  
PMID:24855493   PMID:24861259   PMID:24997347   PMID:25088806   PMID:25124466   PMID:25158681   PMID:25203739   PMID:25252141   PMID:25301327   PMID:25374239   PMID:25410472   PMID:25425647  
PMID:25429064   PMID:25476497   PMID:25481307   PMID:25522654   PMID:25634217   PMID:25647083   PMID:25697985   PMID:25773531   PMID:25793413   PMID:25935582   PMID:26002733   PMID:26020632  
PMID:26049585   PMID:26058395   PMID:26059638   PMID:26087061   PMID:26096372   PMID:26166720   PMID:26191232   PMID:26199450   PMID:26209254   PMID:26228318   PMID:26242176   PMID:26252353  
PMID:26277097   PMID:26323233   PMID:26345775   PMID:26394174   PMID:26415088   PMID:26426292   PMID:26472556   PMID:26482249   PMID:26562495   PMID:26574572   PMID:26631403   PMID:26706698  
PMID:26897397   PMID:26899323   PMID:26921336   PMID:26996624   PMID:27012050   PMID:27019440   PMID:27029552   PMID:27032764   PMID:27067638   PMID:27086564   PMID:27102200   PMID:27145040  
PMID:27165202   PMID:27167072   PMID:27224263   PMID:27289045   PMID:27320036   PMID:27323034   PMID:27324053   PMID:27365044   PMID:27583919   PMID:27602955   PMID:27610593   PMID:27616271  
PMID:27702664   PMID:27778160   PMID:27825388   PMID:27833918   PMID:27900579   PMID:27920344   PMID:27965096   PMID:28024269   PMID:28065637   PMID:28089731   PMID:28112739   PMID:28178648  
PMID:28337664   PMID:28364779   PMID:28410957   PMID:28489882   PMID:28514442   PMID:28559115   PMID:28571770   PMID:28614857   PMID:28619249   PMID:28660501   PMID:28822806   PMID:28888137  
PMID:28951168   PMID:28980890   PMID:28992603   PMID:29050673   PMID:29104246   PMID:29104286   PMID:29228205   PMID:29285776   PMID:29303414   PMID:29329467   PMID:29363090   PMID:29401621  
PMID:29474975   PMID:29564739   PMID:29629743   PMID:29701941   PMID:29855605   PMID:29873201   PMID:29921733   PMID:30044146   PMID:30107717   PMID:30152543   PMID:30159783   PMID:30217785  
PMID:30232779   PMID:30284180   PMID:30353958   PMID:30358714   PMID:30409902   PMID:30442903   PMID:30530883   PMID:30657548   PMID:30658838   PMID:30686017   PMID:30688541   PMID:30855728  
PMID:30878995   PMID:30967597   PMID:30986648   PMID:31006191   PMID:31067541   PMID:31082724   PMID:31179796   PMID:31276164   PMID:31278540   PMID:31371045   PMID:31421163   PMID:31454668  
PMID:31499120   PMID:31518674   PMID:31553790   PMID:31652308   PMID:31669572   PMID:31730745   PMID:31895872   PMID:31989268   PMID:32060549   PMID:32070153   PMID:32219443   PMID:32240464  
PMID:32345338   PMID:32385792   PMID:32460723   PMID:32632513   PMID:32786398   PMID:33153202   PMID:33197426   PMID:33435208   PMID:33836687  


Genomics

Candidate Gene Status
CYP19A1 is a candidate Gene for QTL BW440_H
Comparative Map Data
CYP19A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1551,208,057 - 51,338,601 (-)EnsemblGRCh38hg38GRCh38
GRCh381551,208,057 - 51,338,596 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371551,500,254 - 51,630,793 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361549,288,961 - 49,418,086 (-)NCBINCBI36hg18NCBI36
Celera1528,393,650 - 28,524,194 (-)NCBI
Cytogenetic Map15q21.2NCBI
HuRef1528,330,314 - 28,460,872 (-)NCBIHuRef
CHM1_11551,618,344 - 51,748,904 (-)NCBICHM1_1
Cyp19a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39954,073,221 - 54,175,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl954,073,221 - 54,175,394 (-)Ensembl
GRCm38954,165,937 - 54,268,164 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl954,165,937 - 54,268,110 (-)EnsemblGRCm38mm10GRCm38
MGSCv37954,013,744 - 54,041,249 (-)NCBIGRCm37mm9NCBIm37
MGSCv36953,964,074 - 53,991,581 (-)NCBImm8
Celera951,408,025 - 51,435,376 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.49NCBI
Cyp19a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2854,553,165 - 54,580,758 (-)NCBI
Rnor_6.0 Ensembl858,744,849 - 58,772,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0858,744,849 - 58,772,408 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0857,321,085 - 57,348,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1857,671,013 - 57,691,109 (-)NCBI
Celera854,044,272 - 54,071,684 (-)NCBICelera
Cytogenetic Map8q24NCBI
LOC102023780
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554093,266,233 - 3,313,142 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554093,198,622 - 3,313,072 (+)NCBIChiLan1.0ChiLan1.0
CYP19A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11548,486,688 - 48,616,347 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1548,486,688 - 48,521,554 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01530,152,924 - 30,282,854 (-)NCBIMhudiblu_PPA_v0panPan3
CYP19A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13016,954,020 - 17,056,728 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3016,957,215 - 16,988,353 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3016,883,348 - 16,914,898 (-)NCBI
ROS_Cfam_1.03017,098,681 - 17,221,672 (-)NCBI
UMICH_Zoey_3.13017,024,100 - 17,055,822 (-)NCBI
UNSW_CanFamBas_1.03017,141,587 - 17,173,348 (-)NCBI
UU_Cfam_GSD_1.03017,248,285 - 17,280,035 (-)NCBI
LOC101954950
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864095,258,165 - 95,328,751 (-)NCBI
SpeTri2.0NW_00493647113,107,603 - 13,136,910 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP19A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1120,367,667 - 120,695,899 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11120,596,235 - 120,627,806 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CYP19A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12632,074,260 - 32,164,926 (+)NCBI
ChlSab1.1 Ensembl2632,132,425 - 32,164,277 (+)Ensembl
Vero_WHO_p1.0NW_023666048109,028,218 - 109,061,355 (-)NCBI
LOC101702005
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247319,053,644 - 9,100,212 (+)NCBI

Position Markers
RH69825  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,594,365 - 51,594,587UniSTSGRCh37
Build 361549,381,657 - 49,381,879RGDNCBI36
Celera1528,487,766 - 28,487,988RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,424,621 - 28,424,843UniSTS
GeneMap99-GB4 RH Map15177.86UniSTS
SHGC-34187  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,587,383 - 51,587,484UniSTSGRCh37
Build 361549,374,675 - 49,374,776RGDNCBI36
Celera1528,480,782 - 28,480,883RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,417,640 - 28,417,741UniSTS
Stanford-G3 RH Map151399.0UniSTS
GeneMap99-GB4 RH Map15180.38UniSTS
Whitehead-RH Map15148.7UniSTS
NCBI RH Map15259.6UniSTS
GeneMap99-G3 RH Map151399.0UniSTS
RH17833  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,587,405 - 51,587,642UniSTSGRCh37
Build 361549,374,697 - 49,374,934RGDNCBI36
Celera1528,480,804 - 28,481,041RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,417,662 - 28,417,899UniSTS
GeneMap99-GB4 RH Map15178.2UniSTS
RH77832  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,567,029 - 51,567,222UniSTSGRCh37
Build 361549,354,321 - 49,354,514RGDNCBI36
Celera1528,460,430 - 28,460,623RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,397,208 - 28,397,401UniSTS
GeneMap99-GB4 RH Map15179.76UniSTS
NCBI RH Map15263.1UniSTS
RH15683  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,501,151 - 51,501,294UniSTSGRCh37
Build 361549,288,443 - 49,288,586RGDNCBI36
Celera1528,394,547 - 28,394,690RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,331,210 - 28,331,353UniSTS
GeneMap99-GB4 RH Map15180.5UniSTS
NCBI RH Map15260.8UniSTS
RH93865  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,551,109 - 51,551,272UniSTSGRCh37
Build 361549,338,401 - 49,338,564RGDNCBI36
Celera1528,444,511 - 28,444,674RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,381,296 - 28,381,459UniSTS
GeneMap99-GB4 RH Map15180.43UniSTS
RH68609  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,575,941 - 51,576,186UniSTSGRCh37
Build 361549,363,233 - 49,363,478RGDNCBI36
Celera1528,469,342 - 28,469,587RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,406,122 - 28,406,367UniSTS
RH98549  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,502,224 - 51,502,359UniSTSGRCh37
Build 361549,289,516 - 49,289,651RGDNCBI36
Celera1528,395,620 - 28,395,755RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,332,283 - 28,332,418UniSTS
GeneMap99-GB4 RH Map15178.75UniSTS
RH92302  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,547,708 - 51,547,787UniSTSGRCh37
Build 361549,335,000 - 49,335,079RGDNCBI36
Celera1528,441,109 - 28,441,188RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,377,894 - 28,377,973UniSTS
GeneMap99-GB4 RH Map15177.86UniSTS
G54032  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,502,747 - 51,502,900UniSTSGRCh37
Build 361549,290,039 - 49,290,192RGDNCBI36
Celera1528,396,143 - 28,396,296RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,332,806 - 28,332,959UniSTS
RH121140  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,562,755 - 51,563,072UniSTSGRCh37
Build 361549,350,047 - 49,350,364RGDNCBI36
Celera1528,456,157 - 28,456,474RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,392,939 - 28,393,256UniSTS
TNG Radiation Hybrid Map1516340.0UniSTS
G62528  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,548,189 - 51,548,460UniSTSGRCh37
Build 361549,335,481 - 49,335,752RGDNCBI36
Celera1528,441,590 - 28,441,861RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,378,375 - 28,378,646UniSTS
TNG Radiation Hybrid Map1516349.0UniSTS
GDB:212661  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,519,803 - 51,519,976UniSTSGRCh37
Build 361549,307,095 - 49,307,268RGDNCBI36
Celera1528,413,199 - 28,413,375RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,349,885 - 28,350,058UniSTS
SHGC-132074  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,502,607 - 51,502,881UniSTSGRCh37
Build 361549,289,899 - 49,290,173RGDNCBI36
Celera1528,396,003 - 28,396,277RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,332,666 - 28,332,940UniSTS
TNG Radiation Hybrid Map1516368.0UniSTS
SHGC-144488  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,588,201 - 51,588,478UniSTSGRCh37
Build 361549,375,493 - 49,375,770RGDNCBI36
Celera1528,481,600 - 28,481,877RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,418,458 - 28,418,735UniSTS
TNG Radiation Hybrid Map1516314.0UniSTS
SHGC-145291  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,632,491 - 51,632,776UniSTSGRCh37
Build 361549,419,783 - 49,420,068RGDNCBI36
Celera1528,525,890 - 28,526,175RGD
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map15q21.2UniSTS
HuRef1528,462,568 - 28,462,853UniSTS
TNG Radiation Hybrid Map1516307.0UniSTS
D18S1229  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,502,648 - 51,502,773UniSTSGRCh37
GRCh371551,502,342 - 51,502,477UniSTSGRCh37
Build 361549,289,634 - 49,289,769RGDNCBI36
Celera1528,395,738 - 28,395,873RGD
Celera1528,396,044 - 28,396,169UniSTS
Cytogenetic Map15q21.1UniSTS
HuRef1528,332,401 - 28,332,536UniSTS
HuRef1528,332,707 - 28,332,832UniSTS
TNG Radiation Hybrid Map1516368.0UniSTS
Stanford-G3 RH Map151461.0UniSTS
NCBI RH Map15266.5UniSTS
GeneMap99-G3 RH Map151461.0UniSTS
SGC35215  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,595,770 - 51,595,920UniSTSGRCh37
Build 361549,383,062 - 49,383,212RGDNCBI36
Celera1528,489,171 - 28,489,321RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,426,026 - 28,426,176UniSTS
GeneMap99-GB4 RH Map15181.49UniSTS
Whitehead-RH Map15149.5UniSTS
A004G01  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,598,662 - 51,598,837UniSTSGRCh37
Build 361549,385,954 - 49,386,129RGDNCBI36
Celera1528,492,063 - 28,492,238RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,428,918 - 28,429,093UniSTS
GeneMap99-GB4 RH Map15180.5UniSTS
NCBI RH Map15258.5UniSTS
G67138  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,502,327 - 51,502,935UniSTSGRCh37
Build 361549,289,619 - 49,290,227RGDNCBI36
Celera1528,395,723 - 28,396,331RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,332,386 - 28,332,994UniSTS
G67130  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,528,797 - 51,529,238UniSTSGRCh37
Build 361549,316,089 - 49,316,530RGDNCBI36
Celera1528,422,196 - 28,422,637RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,358,882 - 28,359,323UniSTS
G67131  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,519,848 - 51,520,312UniSTSGRCh37
Build 361549,307,140 - 49,307,604RGDNCBI36
Celera1528,413,244 - 28,413,711RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,349,930 - 28,350,394UniSTS
G67132  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,514,505 - 51,514,781UniSTSGRCh37
Build 361549,301,797 - 49,302,073RGDNCBI36
Celera1528,407,901 - 28,408,177RGD
Cytogenetic Map15q21.1UniSTS
G67133  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,510,530 - 51,510,859UniSTSGRCh37
Build 361549,297,822 - 49,298,151RGDNCBI36
Celera1528,403,926 - 28,404,255RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,340,589 - 28,340,918UniSTS
G67134  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,507,753 - 51,508,209UniSTSGRCh37
Build 361549,295,045 - 49,295,501RGDNCBI36
Celera1528,401,149 - 28,401,605RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,337,812 - 28,338,268UniSTS
G67135  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,507,097 - 51,507,567UniSTSGRCh37
Build 361549,294,389 - 49,294,859RGDNCBI36
Celera1528,400,493 - 28,400,963RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,337,156 - 28,337,626UniSTS
G67136  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,504,392 - 51,504,859UniSTSGRCh37
Build 361549,291,684 - 49,292,151RGDNCBI36
Celera1528,397,788 - 28,398,255RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,334,451 - 28,334,918UniSTS
G67128  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,610,590 - 51,611,076UniSTSGRCh37
Build 361549,397,882 - 49,398,368RGDNCBI36
Celera1528,503,991 - 28,504,477RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,440,672 - 28,441,158UniSTS
G67129  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,610,922 - 51,611,342UniSTSGRCh37
Build 361549,398,214 - 49,398,634RGDNCBI36
Celera1528,504,323 - 28,504,743RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,441,004 - 28,441,424UniSTS
G67137  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,502,834 - 51,503,310UniSTSGRCh37
Build 361549,290,126 - 49,290,602RGDNCBI36
Celera1528,396,230 - 28,396,706RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,332,893 - 28,333,369UniSTS
G67126  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,535,368 - 51,535,864UniSTSGRCh37
Build 361549,322,660 - 49,323,156RGDNCBI36
Celera1528,428,768 - 28,429,264RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,365,553 - 28,366,049UniSTS
G67127  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,534,955 - 51,535,443UniSTSGRCh37
Build 361549,322,247 - 49,322,735RGDNCBI36
Celera1528,428,355 - 28,428,843RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,365,140 - 28,365,628UniSTS
G67172  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,534,901 - 51,535,363UniSTSGRCh37
Build 361549,322,193 - 49,322,655RGDNCBI36
Celera1528,428,301 - 28,428,763RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,365,086 - 28,365,548UniSTS
RH17900  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,610,620 - 51,610,740UniSTSGRCh37
Build 361549,397,912 - 49,398,032RGDNCBI36
Celera1528,504,021 - 28,504,141RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,440,702 - 28,440,822UniSTS
GeneMap99-GB4 RH Map15180.43UniSTS
NCBI RH Map15258.5UniSTS
L77297  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,548,260 - 51,548,336UniSTSGRCh37
Build 361549,335,552 - 49,335,628RGDNCBI36
Celera1528,441,661 - 28,441,737RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,378,446 - 28,378,522UniSTS
WI-11891  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,500,288 - 51,500,389UniSTSGRCh37
Build 361549,287,580 - 49,287,681RGDNCBI36
Celera1528,393,684 - 28,393,785RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,330,348 - 28,330,449UniSTS
GeneMap99-GB4 RH Map15177.64UniSTS
Whitehead-RH Map15149.5UniSTS
D15S1206  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,572,793 - 51,572,992UniSTSGRCh37
Build 361549,360,085 - 49,360,284RGDNCBI36
Celera1528,466,194 - 28,466,393RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,402,974 - 28,403,173UniSTS
Whitehead-RH Map15146.2UniSTS
Whitehead-YAC Contig Map15 UniSTS
WI-2834  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,572,793 - 51,573,016UniSTSGRCh37
Build 361549,360,085 - 49,360,308RGDNCBI36
Celera1528,466,194 - 28,466,417RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,402,974 - 28,403,197UniSTS
Whitehead-RH Map15147.9UniSTS
NCBI RH Map15258.5UniSTS
RH77814  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,587,423 - 51,587,567UniSTSGRCh37
Build 361549,374,715 - 49,374,859RGDNCBI36
Celera1528,480,822 - 28,480,966RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,417,680 - 28,417,824UniSTS
GeneMap99-GB4 RH Map15178.75UniSTS
STS-T97650  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,606,076 - 51,606,184UniSTSGRCh37
Build 361549,393,368 - 49,393,476RGDNCBI36
Celera1528,499,477 - 28,499,585RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,436,332 - 28,436,440UniSTS
GeneMap99-GB4 RH Map15177.75UniSTS
D15S1265  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,598,679 - 51,598,808UniSTSGRCh37
Build 361549,385,971 - 49,386,100RGDNCBI36
Celera1528,492,080 - 28,492,209RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,428,935 - 28,429,064UniSTS
SHGC-34077  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,594,361 - 51,594,490UniSTSGRCh37
Build 361549,381,653 - 49,381,782RGDNCBI36
Celera1528,487,762 - 28,487,891RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,424,617 - 28,424,746UniSTS
Stanford-G3 RH Map151378.0UniSTS
GeneMap99-GB4 RH Map15180.43UniSTS
Whitehead-RH Map15147.9UniSTS
NCBI RH Map15258.5UniSTS
GeneMap99-G3 RH Map151378.0UniSTS
RH44625  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,595,781 - 51,595,917UniSTSGRCh37
Build 361549,383,073 - 49,383,209RGDNCBI36
Celera1528,489,182 - 28,489,318RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,426,037 - 28,426,173UniSTS
GeneMap99-GB4 RH Map15179.49UniSTS
NCBI RH Map15264.2UniSTS
STS-T49215  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,504,503 - 51,504,675UniSTSGRCh37
Build 361549,291,795 - 49,291,967RGDNCBI36
Celera1528,397,899 - 28,398,071RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,334,562 - 28,334,734UniSTS
GeneMap99-GB4 RH Map15177.08UniSTS
RH48681  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,549,722 - 51,549,891UniSTSGRCh37
Build 361549,337,014 - 49,337,183RGDNCBI36
Celera1528,443,123 - 28,443,292RGD
Cytogenetic Map15q21.1UniSTS
HuRef1528,379,908 - 28,380,077UniSTS
GeneMap99-GB4 RH Map15180.38UniSTS
NCBI RH Map15259.6UniSTS
CYP19-3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371551,503,214 - 51,504,677UniSTSGRCh37
Celera1528,396,610 - 28,398,073UniSTS
HuRef1528,333,273 - 28,334,736UniSTS
D18S1229  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15q21.1UniSTS
TNG Radiation Hybrid Map1516368.0UniSTS
Stanford-G3 RH Map151414.0UniSTS
NCBI RH Map15261.2UniSTS
GeneMap99-G3 RH Map151414.0UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR19B2hsa-miR-19b-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI23438603
MIR19B1hsa-miR-19b-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI23438603
MIRLET7F1hsa-let-7f-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI22407818
MIRLET7F1hsa-let-7f-5pOncomiRDBexternal_infoNANA22407818
MIRLET7F2hsa-let-7f-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI22407818
MIRLET7F2hsa-let-7f-5pOncomiRDBexternal_infoNANA22407818
MIR106Ahsa-miR-106a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI23438603

Predicted Target Of
Summary Value
Count of predictions:4393
Count of miRNA genes:1231
Interacting mature miRNAs:1547
Transcripts:ENST00000260433, ENST00000396402, ENST00000396404, ENST00000405011, ENST00000405913, ENST00000439712, ENST00000453807, ENST00000478421, ENST00000490076, ENST00000492852, ENST00000557858, ENST00000557934, ENST00000558066, ENST00000558328, ENST00000559646, ENST00000559653, ENST00000559878, ENST00000559980, ENST00000561066, ENST00000561075
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 35 39 16 18 16 164 1 63 14 18 82 84 5
Low 178 909 621 74 338 28 1921 203 653 17 576 671 47 717 1195
Below cutoff 2145 1930 748 293 1159 178 2140 1923 2532 182 704 753 123 405 1486

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC012169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC020891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF419337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF419338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH001446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY957953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG621764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ024157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D14473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA853862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ118405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ578731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ596808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J04127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L21982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC136851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M18856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M22246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M28420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M74714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF112253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH325004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S41951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S52034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S52789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S52793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S52794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S58866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S71536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S85075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S85356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles