GWAS1541549_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1541549_H (cholesterol:total lipids ratio, low density lipoprotein cholesterol measurement QTL GWAS1541549 (human)) Homo sapiens

Symbol: GWAS1541549_H
Name: cholesterol:total lipids ratio, low density lipoprotein cholesterol measurement QTL GWAS1541549 (human)
RGD ID: 597445475
Trait: cholesterol:total lipids ratio, low density lipoprotein cholesterol measurement
Measurement Type: blood low density lipoprotein cholesterol level   (CMO:0000053)    
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,290,341 - 58,290,342RGD_MAPPER_PIPELINEGRCh38
GRCh371558,582,540 - 58,582,541RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1541549_HHumanblood low density lipoprotein cholesterol level  IAGPrs1973688405850206 GWAS_CATALOGPMID:35213538

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1541549_HHumancholesterol:total lipids ratio  IAGPrs1973688405850206 GWAS_CATALOGPMID:35213538
GWAS1541549_HHumanlow density lipoprotein cholesterol measurement  IAGPrs1973688405850206 GWAS_CATALOGPMID:35213538

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1973688)
Human AssemblyChrPosition (strand)Source
GRCh381558,290,341 - 58,290,342RGD_MAPPER_PIPELINE


1 to 10 of 63 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597443484GWAS1539558_Hfree cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1539558 (human)4e-58free cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155829034158290342Human
597445149GWAS1541223_Hfree cholesterol measurement QTL GWAS1541223 (human)2e-141-stearoyl-2-arachidonoyl-GPE (18:0/20:4) measurementblood cholesterol level (CMO:0002280)155829034158290342Human
597449246GWAS1545320_Hphospholipid measurement, intermediate density lipoprotein measurement QTL GWAS1545320 (human)2e-30phospholipid measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155829034158290342Human
597444763GWAS1540837_Hsphingomyelin measurement QTL GWAS1540837 (human)2e-20sphingomyelin measurement155829034158290342Human
597449627GWAS1545701_Homega-6 polyunsaturated fatty acid measurement QTL GWAS1545701 (human)1e-171-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) measurement155829034158290342Human
597443732GWAS1539806_Hcholine measurement QTL GWAS1539806 (human)2e-36choline measurement155829034158290342Human
597442070GWAS1538144_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1538144 (human)1e-15phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155829034158290342Human
597435414GWAS1531488_Hfree cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1531488 (human)4e-85free cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155829034158290342Human
597441937GWAS1538011_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1538011 (human)3e-37free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155829034158290342Human
597444626GWAS1540700_Hfatty acid measurement QTL GWAS1540700 (human)5e-09fatty acid measurement155829034158290342Human

1 to 10 of 63 rows


1 to 20 of 112 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1541549_H GCST90092905 Cholesterol to total lipids ratio in medium LDL 115,082 European ancestry individuals C 0.717503 1E-8 8 rs1973688 0.0263396 cholesterol:total lipids ratio (EFO:0020943)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1748073_H GCST90093025 Phospholipids to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.717414 9E-15 14.046 rs1973688 0.0357619 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748605_H GCST90093027 Triglycerides to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.717414 3E-11 10.523 rs1973688 0.0296884 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748629_H GCST90093051 Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals C 0.7172 2E-24 23.699 rs1973688 0.0473634 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1748719_H GCST90093021 Free cholesterol to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.717414 2E-19 18.699 rs1973688 0.0401151 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749702_H GCST90093000 Concentration of VLDL particles 115,082 European ancestry individuals C 0.717503 8E-15 14.097 rs1973688 0.0354654 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749832_H GCST90092976 Phospholipid levels in small VLDL 115,082 European ancestry individuals C 0.717503 3E-9 8.523 rs1973688 0.0272648 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1750192_H GCST90093035 Concentration of very small VLDL particles 115,082 European ancestry individuals C 0.717503 9E-63 62.046 rs1973688 0.075588 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1750209_H GCST90093049 Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals C 0.7172 6E-26 25.222 rs1973688 0.048584 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
None Available GCST90092974 Total lipid levels in small VLDL 115,082 European ancestry individuals C 0.717503 3E-11 10.523 rs1973688 0.0301781 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757053_H GCST90092975 Concentration of small VLDL particles 115,082 European ancestry individuals C 0.717503 1E-11 11 rs1973688 0.0308236 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757475_H GCST90092927 Triglycerides to total lipids ratio in medium VLDL 115,082 European ancestry individuals C 0.717503 2E-11 10.699 rs1973688 0.0290263 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757573_H GCST90093041 Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals C 0.7172 2E-18 17.699 rs1973688 0.0405776 cholesterol:total lipids ratio (EFO:0020943)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1757676_H GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.717503 6E-12 11.222 rs1973688 0.0316342 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757687_H GCST90092970 Cholesteryl ester levels in small VLDL 115,082 European ancestry individuals C 0.717503 4E-14 13.398 rs1973688 0.0348172 cholesteryl ester measurement (EFO:0010351)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757763_H GCST90093043 Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals C 0.7172 3E-12 11.523 rs1973688 0.0324904 cholesteryl esters:total lipids ratio (EFO:0020944)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1757848_H GCST90093030 Cholesteryl ester levels in very small VLDL 115,082 European ancestry individuals C 0.717503 4E-48 47.398 rs1973688 0.0647111 cholesteryl ester measurement (EFO:0010351)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758262_H GCST90092978 Triglyceride levels in small VLDL 115,082 European ancestry individuals C 0.717503 2E-8 7.699 rs1973688 0.0249051 triglyceride measurement (EFO:0004530)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758293_H GCST90093032 Free cholesterol levels in very small VLDL 115,082 European ancestry individuals C 0.717503 4E-61 60.398 rs1973688 0.0742391 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758586_H GCST90092972 Free cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.717503 4E-8 7.398 rs1973688 0.0252793 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
1 to 20 of 112 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90092905 GWAS Catalog

Note Type Note Reference