GWAS1757848_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1757848_H (cholesteryl ester measurement, blood VLDL cholesterol amount QTL GWAS1757848 (human)) Homo sapiens

Symbol: GWAS1757848_H
Name: cholesteryl ester measurement, blood VLDL cholesterol amount QTL GWAS1757848 (human)
RGD ID: 598038549
Trait: blood lipid amount   (VT:0003949)    
LOD Score: Not Available
P Value: 4.0E-48
Variance: Not Available
Position No map positions available.
Population Stats: Not Available




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1757848_HHumanblood lipid amount  IAGPrs1973688405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1757848_HHumanblood VLDL cholesterol amount  IAGPrs1973688405850206 GWAS_CATALOGPMID:35213538
GWAS1757848_HHumancholesteryl ester measurement  IAGPrs1973688405850206 GWAS_CATALOGPMID:35213538

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1973688)
Human AssemblyChrPosition (strand)Source
GRCh381558,290,341 - 58,290,342RGD_MAPPER_PIPELINE



1 to 20 of 112 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1757848_H GCST90093030 Cholesteryl ester levels in very small VLDL 115,082 European ancestry individuals C 0.717503 4E-48 47.398 rs1973688 0.0647111 cholesteryl ester measurement (EFO:0010351)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748073_H GCST90093025 Phospholipids to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.717414 9E-15 14.046 rs1973688 0.0357619 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748605_H GCST90093027 Triglycerides to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.717414 3E-11 10.523 rs1973688 0.0296884 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748629_H GCST90093051 Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals C 0.7172 2E-24 23.699 rs1973688 0.0473634 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1748719_H GCST90093021 Free cholesterol to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.717414 2E-19 18.699 rs1973688 0.0401151 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749702_H GCST90093000 Concentration of VLDL particles 115,082 European ancestry individuals C 0.717503 8E-15 14.097 rs1973688 0.0354654 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749832_H GCST90092976 Phospholipid levels in small VLDL 115,082 European ancestry individuals C 0.717503 3E-9 8.523 rs1973688 0.0272648 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1750192_H GCST90093035 Concentration of very small VLDL particles 115,082 European ancestry individuals C 0.717503 9E-63 62.046 rs1973688 0.075588 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1750209_H GCST90093049 Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals C 0.7172 6E-26 25.222 rs1973688 0.048584 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
None Available GCST90092974 Total lipid levels in small VLDL 115,082 European ancestry individuals C 0.717503 3E-11 10.523 rs1973688 0.0301781 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757053_H GCST90092975 Concentration of small VLDL particles 115,082 European ancestry individuals C 0.717503 1E-11 11 rs1973688 0.0308236 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757475_H GCST90092927 Triglycerides to total lipids ratio in medium VLDL 115,082 European ancestry individuals C 0.717503 2E-11 10.699 rs1973688 0.0290263 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757573_H GCST90093041 Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals C 0.7172 2E-18 17.699 rs1973688 0.0405776 cholesterol:total lipids ratio (EFO:0020943)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1757676_H GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.717503 6E-12 11.222 rs1973688 0.0316342 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757687_H GCST90092970 Cholesteryl ester levels in small VLDL 115,082 European ancestry individuals C 0.717503 4E-14 13.398 rs1973688 0.0348172 cholesteryl ester measurement (EFO:0010351)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757763_H GCST90093043 Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals C 0.7172 3E-12 11.523 rs1973688 0.0324904 cholesteryl esters:total lipids ratio (EFO:0020944)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1758262_H GCST90092978 Triglyceride levels in small VLDL 115,082 European ancestry individuals C 0.717503 2E-8 7.699 rs1973688 0.0249051 triglyceride measurement (EFO:0004530)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758293_H GCST90093032 Free cholesterol levels in very small VLDL 115,082 European ancestry individuals C 0.717503 4E-61 60.398 rs1973688 0.0742391 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758586_H GCST90092972 Free cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.717503 4E-8 7.398 rs1973688 0.0252793 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758603_H GCST90093034 Total lipid levels in very small VLDL 115,082 European ancestry individuals C 0.717503 2E-70 69.699 rs1973688 0.0798324 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
1 to 20 of 112 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90093030 GWAS Catalog

Note Type Note Reference