GWAS1522087_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1522087_H (phosphatidylethanolamine measurement QTL GWAS1522087 (human)) Homo sapiens

Symbol: GWAS1522087_H
Name: phosphatidylethanolamine measurement QTL GWAS1522087 (human)
RGD ID: 597426013
Trait: choline measurement
LOD Score: Not Available
P Value: 1.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,386,313 - 58,386,314RGD_MAPPER_PIPELINEGRCh38
GRCh371558,678,512 - 58,678,513RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs10468017)
Human AssemblyChrPosition (strand)Source
GRCh381558,386,313 - 58,386,314RGD_MAPPER_PIPELINE


1 to 10 of 196 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596969876GWAS1089395_Homega-6 polyunsaturated fatty acid measurement QTL GWAS1089395 (human)2e-13phospholipid measurement, intermediate density lipoprotein measurement155838631358386314Human
597452191GWAS1548265_Hintermediate density lipoprotein measurement QTL GWAS1548265 (human)5e-14intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155838631358386314Human
596969875GWAS1089394_Hfree cholesterol measurement QTL GWAS1089394 (human)6e-18free cholesterol measurement155838631358386314Human
597502869GWAS1598943_H1-stearoyl-2-oleoyl-GPE (18:0/18:1) measurement QTL GWAS1598943 (human)4e-531-stearoyl-2-oleoyl-GPE (18:0/18:1) measurement155838631358386314Human
597502871GWAS1598945_H1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) measurement QTL GWAS1598945 (human)1e-1021-palmitoyl-2-linoleoyl-GPE (16:0/18:2) measurement155838631358386314Human
597428625GWAS1524699_Hphosphatidylethanolamine measurement QTL GWAS1524699 (human)5e-16phosphatidylethanolamine measurement155838631358386314Human
597376907GWAS1472981_Hmetabolic syndrome QTL GWAS1472981 (human)6e-08metabolic syndrome155838631358386314Human
596969351GWAS1088870_Hvery low density lipoprotein cholesterol measurement QTL GWAS1088870 (human)1e-14very low density lipoprotein cholesterol measurement155838631358386314Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407150161GWAS799137_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS799137 (human)1e-10lipid measurement, intermediate density lipoprotein measurement155838631358386314Human

1 to 10 of 196 rows


1 to 20 of 166 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1522087_H GCST90060274 Phosphatidylethanolamine_36:3_[M-H]1- levels 13,814 British ancestry individuals T NR 1E-17 17 rs10468017 0.0960269 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1113073_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.715 4E-23 22.398 rs10468017 0.05 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1113074_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 4E-27 26.398 rs10468017 0.051 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1678499_H GCST90428432 Stem cell factor levels 74,780 European ancestry individuals ? 0.306589999999999 3E-8 7.523 rs10468017 0.03393467 kit ligand measurement (EFO:0010612)
 PMID:39794498
GWAS1635918_H GCST90479631 high density lipoprotein cholesterol (HDLC, maximum, inv-norm transformed) 113,085 African American or Afro-Caribbean individuals, 54,914 Hispanic or Latin American individuals, 6,005 East Asian ancestry individuals, 404,121 European ancestry individuals C 0.7468 1E-323 323 rs10468017 0.1374 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1650841_H GCST90475338 hematocrit (maximum, inv-norm transformed) 407,836 European ancestry individuals C 0.7143 4E-11 10.398 rs10468017 0.01856 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1738412_H GCST90091640 Fasting phospholipid levels in very small VLDL null T 0.295905748 4E-15 14.398 rs10468017 0.175423 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1738448_H GCST90091635 Fasting total cholesterol in very small VLDL null T 0.295905748 1E-14 14 rs10468017 0.172103 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1738457_H GCST90091639 Fasting very small VLDL particle concentration null T 0.295905748 1E-13 13 rs10468017 0.165281 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1738563_H GCST90091636 Fasting cholesterol esters in very small VLDL null T 0.295905748 3E-14 13.523 rs10468017 0.169186 esterified cholesterol measurement (EFO:0008589)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739036_H GCST90091777 Postprandial free cholesterol in very small VLDL null T 0.299324822 5E-13 12.302 rs10468017 0.167478 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739098_H GCST90091637 Fasting free cholesterol in very small VLDL null T 0.295905748 2E-14 13.699 rs10468017 0.170628 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739129_H GCST90091778 Postprandial total lipids in very small VLDL null T 0.299324822 6E-11 10.222 rs10468017 0.151977 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739137_H GCST90091779 Postprandial very small VLDL particle concentration null T 0.299324822 2E-10 9.699 rs10468017 0.146823 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739228_H GCST90091780 Postprandial phospholipid levels in very small VLDL null T 0.299324822 4E-12 11.398 rs10468017 0.160951 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
None Available GCST90091638 Fasting total lipids in very small VLDL null T 0.295905748 3E-14 13.523 rs10468017 0.169067 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1748720_H GCST90093021 Free cholesterol to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.704314 4E-95 94.398 rs10468017 0.0907263 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749534_H GCST90093027 Triglycerides to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.704314 9E-49 48.046 rs10468017 0.0643345 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1755908_H GCST90302147 Phospholipids to total lipids ratio in very large VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 110,896 European ancestry individuals T 0.2975 6E-25 24.222 rs10468017 0.0488 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1756373_H GCST90302171 Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 110,896 European ancestry individuals T 0.2985 2E-21 20.699 rs10468017 0.0435 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:38448586
1 to 20 of 166 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90060274 GWAS Catalog
  GCST90091752 GWAS Catalog
  GCST90093019 GWAS Catalog

Note Type Note Reference