GWAS800776_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS800776_H (very low density lipoprotein cholesterol measurement QTL GWAS800776 (human)) Homo sapiens

Symbol: GWAS800776_H
Name: very low density lipoprotein cholesterol measurement QTL GWAS800776 (human)
RGD ID: 407151800
Trait: total cholesterol measurement, high density lipoprotein cholesterol measurement
LOD Score: Not Available
P Value: 1.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,386,313 - 58,386,314RGD_MAPPER_PIPELINEGRCh38
GRCh371558,678,512 - 58,678,513RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs10468017)
Human AssemblyChrPosition (strand)Source
GRCh381558,386,313 - 58,386,314RGD_MAPPER_PIPELINE


1 to 10 of 196 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596969876GWAS1089395_Homega-6 polyunsaturated fatty acid measurement QTL GWAS1089395 (human)2e-13phospholipid measurement, intermediate density lipoprotein measurement155838631358386314Human
597452191GWAS1548265_Hintermediate density lipoprotein measurement QTL GWAS1548265 (human)5e-14intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155838631358386314Human
596969875GWAS1089394_Hfree cholesterol measurement QTL GWAS1089394 (human)6e-18free cholesterol measurement155838631358386314Human
597502869GWAS1598943_H1-stearoyl-2-oleoyl-GPE (18:0/18:1) measurement QTL GWAS1598943 (human)4e-531-stearoyl-2-oleoyl-GPE (18:0/18:1) measurement155838631358386314Human
597502871GWAS1598945_H1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) measurement QTL GWAS1598945 (human)1e-1021-palmitoyl-2-linoleoyl-GPE (16:0/18:2) measurement155838631358386314Human
597428625GWAS1524699_Hphosphatidylethanolamine measurement QTL GWAS1524699 (human)5e-16phosphatidylethanolamine measurement155838631358386314Human
597376907GWAS1472981_Hmetabolic syndrome QTL GWAS1472981 (human)6e-08metabolic syndrome155838631358386314Human
596969351GWAS1088870_Hvery low density lipoprotein cholesterol measurement QTL GWAS1088870 (human)1e-14very low density lipoprotein cholesterol measurement155838631358386314Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407150161GWAS799137_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS799137 (human)1e-10lipid measurement, intermediate density lipoprotein measurement155838631358386314Human

1 to 10 of 196 rows


1 to 20 of 166 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1113073_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.715 4E-23 22.398 rs10468017 0.05 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1113074_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 4E-27 26.398 rs10468017 0.051 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1678499_H GCST90428432 Stem cell factor levels 74,780 European ancestry individuals ? 0.306589999999999 3E-8 7.523 rs10468017 0.03393467 kit ligand measurement (EFO:0010612)
 PMID:39794498
GWAS1635918_H GCST90479631 high density lipoprotein cholesterol (HDLC, maximum, inv-norm transformed) 113,085 African American or Afro-Caribbean individuals, 54,914 Hispanic or Latin American individuals, 6,005 East Asian ancestry individuals, 404,121 European ancestry individuals C 0.7468 1E-323 323 rs10468017 0.1374 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1650841_H GCST90475338 hematocrit (maximum, inv-norm transformed) 407,836 European ancestry individuals C 0.7143 4E-11 10.398 rs10468017 0.01856 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1738412_H GCST90091640 Fasting phospholipid levels in very small VLDL null T 0.295905748 4E-15 14.398 rs10468017 0.175423 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1738448_H GCST90091635 Fasting total cholesterol in very small VLDL null T 0.295905748 1E-14 14 rs10468017 0.172103 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1738457_H GCST90091639 Fasting very small VLDL particle concentration null T 0.295905748 1E-13 13 rs10468017 0.165281 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1738563_H GCST90091636 Fasting cholesterol esters in very small VLDL null T 0.295905748 3E-14 13.523 rs10468017 0.169186 esterified cholesterol measurement (EFO:0008589)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739036_H GCST90091777 Postprandial free cholesterol in very small VLDL null T 0.299324822 5E-13 12.302 rs10468017 0.167478 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739098_H GCST90091637 Fasting free cholesterol in very small VLDL null T 0.295905748 2E-14 13.699 rs10468017 0.170628 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739129_H GCST90091778 Postprandial total lipids in very small VLDL null T 0.299324822 6E-11 10.222 rs10468017 0.151977 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739137_H GCST90091779 Postprandial very small VLDL particle concentration null T 0.299324822 2E-10 9.699 rs10468017 0.146823 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1739228_H GCST90091780 Postprandial phospholipid levels in very small VLDL null T 0.299324822 4E-12 11.398 rs10468017 0.160951 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
None Available GCST90091638 Fasting total lipids in very small VLDL null T 0.295905748 3E-14 13.523 rs10468017 0.169067 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:34610981
GWAS1748720_H GCST90093021 Free cholesterol to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.704314 4E-95 94.398 rs10468017 0.0907263 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1749534_H GCST90093027 Triglycerides to total lipids ratio in very large VLDL 114,160 European ancestry individuals C 0.704314 9E-49 48.046 rs10468017 0.0643345 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1755908_H GCST90302147 Phospholipids to total lipids ratio in very large VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 110,896 European ancestry individuals T 0.2975 6E-25 24.222 rs10468017 0.0488 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1756373_H GCST90302171 Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 110,896 European ancestry individuals T 0.2985 2E-21 20.699 rs10468017 0.0435 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:38448586
GWAS1757199_H GCST90093002 Average diameter for VLDL particles 115,082 European ancestry individuals C 0.704063 5E-178 177.302 rs10468017 0.120101 VLDL particle size (OBA:2050114)
 PMID:35213538
1 to 20 of 166 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90091635 GWAS Catalog
  GCST90091662 GWAS Catalog

Note Type Note Reference