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QTL: GWAS1308769_H (trait in response to ethanol QTL GWAS1308769 (human)) Homo sapiens

Symbol:

GWAS1308769_H

Name:

trait in response to ethanol QTL GWAS1308769 (human)

RGD ID:

597212695

Trait:

trait in response to ethanol

LOD Score:

Not Available

P Value:

2.0E-6

Variance:

Not Available

Position

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh38	15	45,200,754 - 45,200,755	RGD_MAPPER_PIPELINE	GRCh38
GRCh37	15	45,492,952 - 45,492,953	RGD_MAPPER_PIPELINE	GRCh37

Population Stats:

Not Available

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GWAS1308769_H	Human	trait in response to ethanol		IAGP	rs116879015	405850206		GWAS_CATALOG	PMID:30276832

#	Reference Title	Reference Citation
1.	RGD GWAS Catalog Import Pipeline	RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
1602197	SHF	Src homology 2 domain containing F	15	45167214	45201116	Human
155751686	LOC127829462	H3K27ac hESC enhancer GRCh37_chr15:45493041-45493550	15	45200686	45201355	Human

Peak: (rs116879015)

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	45,200,754 - 45,200,755	RGD_MAPPER_PIPELINE

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2289410	BW327_H	Body weight QTL 327 (human)	3.32	0.0001	Body fat amount		15	19980129	45980129	Human
1643273	BW330_H	Body Weight QTL 330 (human)	1.05	0.014	Body weight	body mass index	15	26866719	52866719	Human
2289430	BMD7_H	Bone mineral density QTL 7 (human)	3.32	0.0001	Bone mineral density		15	19980129	45980129	Human
1559411	SCL107_H	Serum cholesterol level QTL 107 (human)	3.88		Lipid level	triglyceride	15	26543552	52543552	Human
2299958	PRSTS330_H	Prostate tumor susceptibility QTL 330 (human)	1.02	0.0151	Prostate tumor susceptibility		15	34790230	60790230	Human
1643523	BW284_H	Body Weight QTL 284 (human)	1.95	0.0013	Body weight		15	21792889	47792889	Human
1559354	LDLPS4_H	Low density lipoprotein particle size QTL 4 (human)	2.2	0.019	LDL particle size		15	34790230	60790230	Human
2289420	BW314_H	Body weight QTL 314 (human)	2.72	0.0003	Body weight	lean mass	15	19980129	45980129	Human
597212695	GWAS1308769_H	trait in response to ethanol QTL GWAS1308769 (human)		0.000002	trait in response to ethanol		15	45200754	45200755	Human

Data has come from the GWAS Catalog		Download
The highlighted row represents the current QTL

QTL	GWAS Catalog Study	Disease Trait	Study Size	Risk Allele	Risk Allele Frequency	P Value	P Value MLOG	Peak Marker	Reported Odds Ratio or Beta-coefficient	Ontology Accession	PubMed
GWAS1308769_H	GCST006633	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	?	NR	0.000002	5.699	rs116879015	N/A	trait in response to ethanol (OBA:2040030)	PMID:30276832

Database	Acc Id	Source(s)
GWAS Catalog	GCST006633	GWAS Catalog

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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QTL: GWAS1308769_H (trait in response to ethanol QTL GWAS1308769 (human)) Homo sapiens