rs116879015 Rat Genome Database

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Variant: rs116879015 -  Homo sapiens

RGD ID: 406206875
RS ID: rs116879015
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LOC127829462  SHF  
Reference Nucleotide: G
Variant Nucleotide: ?
Position
Assembly Chr Position
GRCh38 15 45,200,754
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
rs116879015Humantrait in response to ethanol  IAGP 405850206 GWAS_CATALOGPMID:30276832
Data has come from the GWAS Catalog   
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1308769_H GCST006633 Initial alcohol sensitivity 6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals ? NR 0.000002 5.699 rs116879015 N/A trait in response to ethanol (OBA:2040030)
 PMID:30276832

Gene Symbol:SHF
Accession:NM_138356
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:NM_001394048
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:NM_001394047
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:NM_001394046
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:NM_001394045
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:NM_001394043
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:NM_001394041
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:XM_047433286
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:XM_047433285
Location:5UTRS;EXON

Gene Symbol:SHF
Accession:NM_001301170
Location:INTRON

Gene Symbol:SHF
Accession:NM_001301169
Location:INTRON

Gene Symbol:SHF
Accession:NM_001301168
Location:INTRON

Gene Symbol:SHF
Accession:NM_001301171
Location:INTRON

Gene Symbol:SHF
Accession:XM_011522178
Location:INTRON

Gene Symbol:SHF
Accession:XM_017022710
Location:INTRON

Gene Symbol:SHF
Accession:NM_001394042
Location:INTRON

Gene Symbol:SHF
Accession:NM_001394039
Location:INTRON

Gene Symbol:SHF
Accession:NM_001394040
Location:INTRON

Gene Symbol:SHF
Accession:NM_001394038
Location:INTRON

Gene Symbol:SHF
Accession:NM_001394037
Location:INTRON

Gene Symbol:SHF
Accession:NM_001394044
Location:INTRON

Gene Symbol:SHF
Accession:XM_047433284
Location:INTRON

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Database
Acc Id
Source(s)
GWAS Catalog GCST006633 GWAS Catalog