AU049654 Marker Search Result - Rat Genome Database

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Marker: AU049654

Symbol: AU049654
Previously known as:
RGD ID: 5090275
Expected Size: 151 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21117,014,818 - 17,014,969 (+)MAPPERmRatBN7.2
Rnor_6.01116,858,308 - 16,858,458NCBIRnor6.0
Rnor_5.01120,512,955 - 20,513,105UniSTSRnor5.0
RGSC_v3.41117,226,292 - 17,226,442UniSTSRGSC3.4
Celera1117,005,683 - 17,005,833UniSTS
Cytogenetic Map11q11UniSTS
Is Marker For: Genes:   Cxadr  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GCAATGATTCTGTCGGTCTCT
Reverse Primer CTGTTGGAGGCTAGCGTGAG
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
619794CxadrCXADR, Ig-like cell adhesion molecule111698286417030078Rat

Nucleotide Sequences
GenBank Nucleotide AU049654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 89843 UniSTS