DXRat144 Marker Search Result - Rat Genome Database

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Marker: DXRat144

Symbol: DXRat144
Previously known as: R0325-C07; oxsts11780; 
RGD ID: 42436
Expected Size: 246 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X28,705,502 - 28,705,757 (+)MAPPERmRatBN7.2
Rnor_6.0X30,269,072 - 30,269,326NCBIRnor6.0
Rnor_5.0X30,657,342 - 30,657,596UniSTSRnor5.0
RGSC_v3.4X49,441,524 - 49,441,779RGDRGSC3.4
RGSC_v3.4X49,441,525 - 49,441,779UniSTSRGSC3.4
RGSC_v3.1X49,494,993 - 49,495,248RGD
CeleraX29,068,610 - 29,068,864UniSTS
FHH x ACI MapX13.45RGD
FHH x ACI MapX13.45UniSTS


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCAGGTTCAAGAGGAGACCA
Reverse Primer CCTTCTTCACCTCACTTTCCC
 
Template 
CGAGGATCCCCCTCCAGGTTCAAGAGGAGACCATATGTAAAATGAGTAAGTCAGTGGGAGGTAG
AAGAAGGAATGAATGTACGACTCTGGACTCTATATTTGCAGGTGTGGTACTTGAACCTTCATAC
ATACAAGTATATACATCATACCCATAAAACACACACACACACACACACACACACACACACACAC
ACACACAAATAGAAGAGNCGTGNTTCTAGAGAATCTGTAACAAAGTGGGAAAGTGAGGTGAAGA
AGGAGAGAAGATAAATAGGAGAGGNAGGTGAGACCTAGGCTTGAAGGGGTACCGAGCTCGAATT
ACGTAATCATGGTCATAGACTGTTTCCTGTGTGAAATTGTTATCCGCNCACAATTCCACACAAC
ATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAA
TTGCGTTGCGCNCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT
CGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAG
TGAGACGGGCAACAGCTGATTGCCCTTCCCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCA
CGCTGGTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGTGGTTCGNAATCGGCAAAATCCTTA
TANTCAAAGAATAGCCGAGATGGGTTGAGTGTTGTNCAGTTTGNACAGATCNTTTANGACGTGG
ATCNNCGTCNGGGGAAACGTTNCAGGCGANGCACTNNNNNCNCACCAATCAGTTTTTTGGGGTG
NGGTNGCNNNNNTNAA

Region

Nucleotide Sequences
GenBank Nucleotide CH474014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat


Additional Information

Database Acc Id Source(s)
UniSTS 228416 UniSTS