D18Chm15 Marker Search Result - Rat Genome Database

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Marker: D18Chm15

Symbol: D18Chm15
Previously known as:
RGD ID: 1579086
Expected Size: 220 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,315,590 - 7,315,814 (+)MAPPERmRatBN7.2
Rnor_6.0187,609,343 - 7,609,562NCBIRnor6.0
Rnor_5.0187,542,357 - 7,542,576UniSTSRnor5.0
RGSC_v3.4187,549,729 - 7,549,948UniSTSRGSC3.4
Celera187,329,269 - 7,329,488UniSTS
Cytogenetic Map18 RGD
Is Marker For: Genes:   LOC100359460  


Annotation


References - curated
# Reference Title Reference Citation
1. A loss of genome buffering capacity of Dahl salt-sensitive model to modulate blood pressure as a cause of hypertension. Charron S, etal., Hum Mol Genet. 2005 Dec 15;14(24):3877-84. Epub 2005 Nov 8.
2. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCACAGCTGGCTTTTGTTCTT
Reverse Primer TCCATCCATTTTGCTGACAA
 
Template 
TACCTGCACCCCAACAACTCATATTGCACCATGTAGAACTGTAGACACTAGTCAACAGAGAGAA
ACTTCTAGTTCAGCTTAAGACTGATTTCTCTGTATCTTGTATCCAAACATTGTGGTGTCTTACC
AATTCATTCAGTTAGGCTAACCAAGAAGAATAGCAAAAGCCTGTATTTCTTGGGAGGCTTCATG
ATCAACAACTTTTATTGTGTATCTCACAGCTGGCTTTTGTTCTTTAGGGACCTGTTACTTCCAG
GACAAGAATCAACTAGCCTTGCAGGGTATCTACTGCCAATCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCCTCTCCTCTCCTCTCCTC
TCCTCTCCTCTCCCCCTCAGTGTTTTTTTTTTTGTCAGCAAAATGGATGGATATAAAATTAACT
CGAACAAATCAGTACCTTTCCTCTACTCAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAAT
GACACTCTTCACAATAGTCACAAATAATATAAAATACCTTGGTGTGACTCTAACCAAGCAAGTG
AAAGATCTGTATGACAAAACTTCAAGTCTCTGAAGAAAGAAATCGAGGAAGATCTCAGAAGATG
GAAAGATCTC

Region

Nucleotide Sequences
GenBank Nucleotide CH474065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100359460 UniSTS