S100a7a (S100 calcium binding protein A7A)

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Gene: S100a7a (S100 calcium binding protein A7A) Rattus norvegicus

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Symbol:

S100a7a

Name:

S100 calcium binding protein A7A

RGD ID:

1593779

Description:

Predicted to enable several functions, including calcium-dependent protein binding activity; chemoattractant activity; and identical protein binding activity. Predicted to be involved in positive chemotaxis. Predicted to act upstream of or within inflammatory response. Predicted to be located in cytosol. Predicted to be active in cytoplasm and extracellular space. Orthologous to human S100A7A (S100 calcium binding protein A7A); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 4-aminopyridine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC685479; protein S100-A15A; S100 calcium binding protein A15; S100a15; similar to S100 calcium binding protein A15

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,448,983 - 178,453,424 (+)	NCBI		GRCr8
mRatBN7.2	2	176,151,405 - 176,155,846 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	176,151,288 - 176,156,441 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,291,695 - 183,296,136 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,313,951 - 181,318,392 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,913,781 - 175,918,222 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	190,058,093 - 190,063,132 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	190,058,093 - 190,062,534 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,492,452 - 209,496,893 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,946,273 - 182,950,714 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	170,084,151 - 170,088,592 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

polycystic ovary syndrome (ISO)

psoriasis (ISS)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4-aminopyridine (EXP)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

epoxiconazole (ISO)

glyphosate (ISO)

hydroquinone (ISO)

nevirapine (EXP)

nickel atom (ISO)

ozone (ISO)

perfluorobutyric acid (ISO)

perfluorohexanesulfonic acid (ISO)

perfluoropentanoic acid (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

trichloroethene (EXP)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

inflammatory response (ISO)

positive chemotaxis (IEA)

Cellular Component

cytoplasm (IBA)

cytosol (ISO)

extracellular space (IBA,ISO)

Molecular Function

calcium ion binding (IBA)

calcium-dependent protein binding (IBA)

chemoattractant activity (IBA,ISO)

identical protein binding (ISO)

protein binding (ISO)

transition metal ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21148126

Genomics

Comparative Map Data

S100a7a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,448,983 - 178,453,424 (+)	NCBI		GRCr8
mRatBN7.2	2	176,151,405 - 176,155,846 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	176,151,288 - 176,156,441 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,291,695 - 183,296,136 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,313,951 - 181,318,392 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,913,781 - 175,918,222 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	190,058,093 - 190,063,132 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	190,058,093 - 190,062,534 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,492,452 - 209,496,893 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,946,273 - 182,950,714 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	170,084,151 - 170,088,592 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

S100A7A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,416,520 - 153,423,222 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,416,520 - 153,423,222 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	153,388,996 - 153,395,698 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	151,655,624 - 151,662,325 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	150,202,072 - 150,208,776	NCBI
Celera	1	126,460,255 - 126,466,956 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	124,752,411 - 124,759,112 (+)	NCBI		HuRef
CHM1_1	1	154,784,713 - 154,791,415 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	152,553,744 - 152,560,447 (+)	NCBI		T2T-CHM13v2.0

S100a7a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,561,609 - 90,565,437 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,561,324 - 90,565,976 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	90,651,925 - 90,658,130 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,654,017 - 90,658,669 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	90,458,224 - 90,462,052 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,740,229 - 90,744,057 (+)	NCBI		MGSCv36	mm8
Celera	3	90,695,739 - 90,699,559 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.82	NCBI

LOC102156046
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,503,226 - 43,537,485 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,996,095 - 43,030,358 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,452,867 - 43,487,148 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	7	43,155,134 - 43,189,463 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	43,208,988 - 43,243,276 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,492,651 - 43,526,916 (+)	NCBI		UU_Cfam_GSD_1.0

S100A7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	96,176,718 - 96,178,694 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	105,122,497 - 105,125,378 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Variants

Variants in S100a7a
1 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	86
Count of miRNA genes:	70
Interacting mature miRNAs:	75
Transcripts:	ENSRNOT00000051365
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Markers in Region

D2Rat110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	176,150,360 - 176,150,588 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	190,057,049 - 190,057,276	NCBI	Rnor6.0
Rnor_5.0	2	209,491,408 - 209,491,635	UniSTS	Rnor5.0
RGSC_v3.4	2	182,945,228 - 182,945,456	RGD	RGSC3.4
RGSC_v3.4	2	182,945,229 - 182,945,456	UniSTS	RGSC3.4
RGSC_v3.1	2	182,895,334 - 182,895,562	RGD
Celera	2	170,083,109 - 170,083,334	UniSTS
SHRSP x BN Map	2	70.0898	RGD
SHRSP x BN Map	2	70.0898	UniSTS
Cytogenetic Map	2	q34	UniSTS

RH128552

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	176,156,127 - 176,156,308 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	190,062,816 - 190,062,996	NCBI	Rnor6.0
Rnor_5.0	2	209,497,175 - 209,497,355	UniSTS	Rnor5.0
RGSC_v3.4	2	182,950,996 - 182,951,176	UniSTS	RGSC3.4
Celera	2	170,088,874 - 170,089,054	UniSTS
RH 3.4 Map	2	1166.7	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
4	2	6	9	6	16	4	6	20	13	2	1	20	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000051365 ⟹ ENSRNOP00000043898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	176,151,288 - 176,156,441 (+)	Ensembl
Rnor_6.0 Ensembl	2	190,058,093 - 190,062,534 (+)	Ensembl

RefSeq Acc Id:

NM_001109471 ⟹ NP_001102941

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,448,983 - 178,453,424 (+)	NCBI
mRatBN7.2	2	176,151,405 - 176,155,846 (+)	NCBI
Rnor_6.0	2	190,058,093 - 190,062,534 (+)	NCBI
Rnor_5.0	2	209,492,452 - 209,496,893 (+)	NCBI
RGSC_v3.4	2	182,946,273 - 182,950,714 (+)	RGD
Celera	2	170,084,151 - 170,088,592 (+)	RGD

Sequence:

show sequence

CCTGGTGGAAGTTCCCCTGTTCAGAAGTCTGCCTTTTATCTGATTTCCAGGATCATATAGAGGC
TGGGCTGTGGATGAAGAGCAGCCCTGCATTGAGAGCAACAGACTCTCCACTGTCCCAGAGCCTC
CTCATCTACTCTGCAGATTTGCCTGTACCCTGAAGGGTCCATCGGTCATGCCAGACACACCAGT
AGAGGACTCCCTTTTCCAAATCATACACTGCTTTCATCACTATGCTGCCCGGGAAGGGGACAAG
GAGACCTTGTCCCTGGAGGAGCTGAAAGCCCTGCTCTTGGATAGTGTGCCTCGCTTCATGGACA
CCCTGGGCCGCAGGCAGCCATACTACATCACAGAGCTCTTCCGGGCGGCTGACAAAAACAAGGA
CAACCAGATCTGCTTCGATGAGTTCCTGTACATCTTGGGCAAACTGGTGAAGGACTATCATCTT
CAGTTTCACCGGCAGTTGTGCACACACTACTGCACCCAGCACAACCTCTACTAAAGGGGGACAG
GCAGTCTCTCATCACCAGAACTTGTTCCTGGAGACATGGCCTGACTAAGAACAGCTTACAGAAC
TTAGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102941	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00537	(Get FASTA)	NCBI Sequence Viewer
	EDM00538	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043898.3

RefSeq Acc Id:	NP_001102941 ⟸ NM_001109471
- UniProtKB:	D3ZDM0 (UniProtKB/TrEMBL), A6J6Q2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPDTPVEDSLFQIIHCFHHYAAREGDKETLSLEELKALLLDSVPRFMDTLGRRQPYYITELFRA ADKNKDNQICFDEFLYILGKLVKDYHLQFHRQLCTHYCTQHNLY hide sequence

Ensembl Acc Id:

ENSRNOP00000043898 ⟸ ENSRNOT00000051365

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZDM0-F1-model_v2	AlphaFold	D3ZDM0	1-108	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1593779	AgrOrtholog
BioCyc Gene	G2FUF-52325	BioCyc
Ensembl Genes	ENSRNOG00000033352	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000051365.4	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-like_dom	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_Ca-bd	UniProtKB/TrEMBL
	S-100_dom	UniProtKB/TrEMBL
	S100_Ca-bd_sub	UniProtKB/TrEMBL
KEGG Report	rno:685479	UniProtKB/TrEMBL
NCBI Gene	685479	ENTREZGENE
PANTHER	PTHR11639:SF29	UniProtKB/TrEMBL
	S100 CALCIUM-BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	efhand	UniProtKB/TrEMBL
	S_100	UniProtKB/TrEMBL
PhenoGen	S100a7a	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000033352	RatGTEx
SMART	EFh	UniProtKB/TrEMBL
	S_100	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A6J6Q2	ENTREZGENE, UniProtKB/TrEMBL
	D3ZDM0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	S100a7a	S100 calcium binding protein A7A	LOC685479	similar to S100 calcium binding protein A15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC685479	similar to S100 calcium binding protein A15	LOC686730	similar to S100 calcium binding protein A15	Data merged from RGD:1593731	1643240	APPROVED
2006-11-20	LOC685479	similar to S100 calcium binding protein A15			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC686730	similar to S100 calcium binding protein A15			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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