Symbol:
Dbr1
Name:
debranching RNA lariats 1
RGD ID:
1598038
Description:
Predicted to enable RNA lariat debranching enzyme activity. Predicted to be involved in RNA fragment catabolic process and RNA splicing, via transesterification reactions. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Human ortholog(s) of this gene implicated in brain disease. Orthologous to human DBR1 (debranching RNA lariats 1); INTERACTS WITH bisphenol A; cadmium dichloride; Cuprizon.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
debranching enzyme homolog 1; debranching enzyme homolog 1 (S. cerevisiae); lariat debranching enzyme; LOC315950; LOC681234; similar to debranching enzyme homolog 1
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
DBR1 (debranching RNA lariats 1)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Dbr1 (debranching RNA lariats 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
DBR1 (debranching RNA lariats 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
DBR1 (debranching RNA lariats 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Dbr1 (debranching RNA lariats 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
DBR1 (debranching RNA lariats 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
DBR1 (debranching RNA lariats 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Dbr1 (debranching RNA lariats 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
DBR1 (debranching RNA lariats 1)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Dbr1 (debranching RNA lariats 1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
dbr1 (debranching RNA lariats 1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
DBR1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
dbr-1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|SonicParanoid)
Drosophila melanogaster (fruit fly):
ldbr
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
dbr1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 8 109,018,364 - 109,030,092 (+) NCBI GRCr8 mRatBN7.2 8 100,139,039 - 100,150,768 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 8 100,139,034 - 100,151,030 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 8 105,805,842 - 105,817,525 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 8 104,005,138 - 104,016,821 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 8 101,847,672 - 101,859,355 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 8 107,826,690 - 107,838,186 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 8 107,826,424 - 107,838,339 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 8 107,251,356 - 107,262,732 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 8 104,443,418 - 104,455,249 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 8 99,539,355 - 99,551,081 (+) NCBI Celera Cytogenetic Map 8 q31 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Dbr1 Rat 1,2-dimethylhydrazine increases expression ISO RGD:1619922 6480464 1,2-Dimethylhydrazine results in increased expression of DBR1 mRNA CTD PMID:22206623 Dbr1 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO RGD:1619922 6480464 Tetrachlorodibenzodioxin affects the expression of DBR1 mRNA CTD PMID:21570461 Dbr1 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression ISO RGD:1323625 6480464 Tetrachlorodibenzodioxin results in decreased expression of DBR1 mRNA CTD PMID:29704546 Dbr1 Rat acrylamide decreases expression ISO RGD:1323625 6480464 Acrylamide results in decreased expression of DBR1 mRNA CTD PMID:32763439 Dbr1 Rat aflatoxin B1 increases expression ISO RGD:1619922 6480464 Aflatoxin B1 results in increased expression of DBR1 mRNA CTD PMID:19770486 Dbr1 Rat arsane multiple interactions ISO RGD:1323625 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of DBR1 more ... CTD PMID:39836092 Dbr1 Rat arsenic atom multiple interactions ISO RGD:1323625 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of DBR1 more ... CTD PMID:39836092 Dbr1 Rat benzo[a]pyrene multiple interactions ISO RGD:1619922 6480464 Benzo(a)pyrene promotes the reaction [AHR protein binds to DBR1 promoter] CTD PMID:19654925 Dbr1 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of DBR1 mRNA CTD PMID:25181051|PMID:34947998 Dbr1 Rat bisphenol A decreases expression ISO RGD:1619922 6480464 bisphenol A results in decreased expression of DBR1 mRNA CTD PMID:33221593 Dbr1 Rat cadmium dichloride increases expression EXP 6480464 Cadmium Chloride results in increased expression of DBR1 mRNA CTD PMID:31077537 Dbr1 Rat cadmium dichloride decreases expression ISO RGD:1323625 6480464 Cadmium Chloride results in decreased expression of DBR1 mRNA CTD PMID:38568856 Dbr1 Rat cadmium dichloride multiple interactions EXP 6480464 [Cadmium Chloride co-treated with diallyl disulfide] results in increased expression of DBR1 mRNA CTD PMID:31077537 Dbr1 Rat chlorpyrifos decreases expression ISO RGD:1619922 6480464 Chlorpyrifos results in decreased expression of DBR1 mRNA CTD PMID:37019170 Dbr1 Rat copper(II) sulfate decreases expression ISO RGD:1323625 6480464 Copper Sulfate results in decreased expression of DBR1 mRNA CTD PMID:19549813 Dbr1 Rat Cuprizon decreases expression EXP 6480464 Cuprizone results in decreased expression of DBR1 mRNA CTD PMID:26577399 Dbr1 Rat Cuprizon increases expression EXP 6480464 Cuprizone results in increased expression of DBR1 mRNA CTD PMID:27523638 Dbr1 Rat cyclosporin A decreases expression ISO RGD:1323625 6480464 Cyclosporine results in decreased expression of DBR1 mRNA CTD PMID:25562108 Dbr1 Rat diallyl disulfide multiple interactions EXP 6480464 [Cadmium Chloride co-treated with diallyl disulfide] results in increased expression of DBR1 mRNA CTD PMID:31077537 Dbr1 Rat Dibutyl phosphate affects expression ISO RGD:1323625 6480464 di-n-butylphosphoric acid affects the expression of DBR1 mRNA CTD PMID:37042841 Dbr1 Rat dibutyl phthalate decreases expression ISO RGD:1619922 6480464 Dibutyl Phthalate results in decreased expression of DBR1 mRNA CTD PMID:21266533 Dbr1 Rat dorsomorphin multiple interactions ISO RGD:1323625 6480464 [NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Dbr1 Rat enzyme inhibitor multiple interactions ISO RGD:1323625 6480464 [Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation more ... CTD PMID:23301498 Dbr1 Rat epoxiconazole decreases expression ISO RGD:1619922 6480464 epoxiconazole results in decreased expression of DBR1 mRNA CTD PMID:35436446 Dbr1 Rat ethanol increases expression ISO RGD:1619922 6480464 Ethanol results in increased expression of DBR1 mRNA CTD PMID:30319688 Dbr1 Rat formaldehyde increases expression ISO RGD:1323625 6480464 Formaldehyde results in increased expression of DBR1 mRNA CTD PMID:23649840 Dbr1 Rat FR900359 decreases phosphorylation ISO RGD:1323625 6480464 FR900359 results in decreased phosphorylation of DBR1 protein CTD PMID:37730182 Dbr1 Rat ivermectin decreases expression ISO RGD:1323625 6480464 Ivermectin results in decreased expression of DBR1 protein CTD PMID:32959892 Dbr1 Rat leflunomide decreases expression ISO RGD:1323625 6480464 leflunomide results in decreased expression of DBR1 mRNA CTD PMID:28988120 Dbr1 Rat methyl methanesulfonate increases expression ISO RGD:1323625 6480464 Methyl Methanesulfonate results in increased expression of DBR1 mRNA CTD PMID:23649840 Dbr1 Rat methylisothiazolinone increases expression ISO RGD:1323625 6480464 2-methyl-4-isothiazolin-3-one results in increased expression of DBR1 mRNA CTD PMID:31629900 Dbr1 Rat okadaic acid increases expression ISO RGD:1323625 6480464 Okadaic Acid results in increased expression of DBR1 mRNA CTD PMID:38832940 Dbr1 Rat p-chloromercuribenzoic acid decreases expression ISO RGD:1323625 6480464 p-Chloromercuribenzoic Acid results in decreased expression of DBR1 mRNA CTD PMID:26272509 Dbr1 Rat p-chloromercuribenzoic acid multiple interactions ISO RGD:1323625 6480464 [NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Dbr1 Rat quercetin decreases expression ISO RGD:1323625 6480464 Quercetin results in decreased expression of DBR1 mRNA CTD PMID:21632981 Dbr1 Rat resveratrol decreases expression EXP 6480464 resveratrol results in decreased expression of DBR1 mRNA CTD PMID:25905778 Dbr1 Rat resveratrol multiple interactions ISO RGD:1323625 6480464 [Plant Extracts co-treated with Resveratrol] results in increased expression of DBR1 mRNA CTD PMID:23557933 Dbr1 Rat Salinomycin decreases expression ISO RGD:1323625 6480464 salinomycin results in decreased expression of DBR1 mRNA CTD PMID:19682730 Dbr1 Rat SB 431542 multiple interactions ISO RGD:1323625 6480464 [NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Dbr1 Rat senecionine increases expression ISO RGD:1619922 6480464 senecionine results in increased expression of DBR1 protein CTD PMID:35357534 Dbr1 Rat sodium arsenite decreases expression ISO RGD:1323625 6480464 sodium arsenite results in decreased expression of DBR1 mRNA CTD PMID:38568856 Dbr1 Rat sodium arsenite multiple interactions ISO RGD:1323625 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of DBR1 more ... CTD PMID:39836092 Dbr1 Rat thioacetamide increases expression EXP 6480464 Thioacetamide results in increased expression of DBR1 mRNA CTD PMID:34492290 Dbr1 Rat thiram increases expression ISO RGD:1323625 6480464 Thiram results in increased expression of DBR1 mRNA CTD PMID:38568856 Dbr1 Rat triptonide increases expression ISO RGD:1619922 6480464 triptonide results in increased expression of DBR1 mRNA CTD PMID:33045310 Dbr1 Rat tungsten increases expression ISO RGD:1619922 6480464 Tungsten results in increased expression of DBR1 mRNA CTD PMID:30912803
Dbr1 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 8 109,018,364 - 109,030,092 (+) NCBI GRCr8 mRatBN7.2 8 100,139,039 - 100,150,768 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 8 100,139,034 - 100,151,030 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 8 105,805,842 - 105,817,525 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 8 104,005,138 - 104,016,821 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 8 101,847,672 - 101,859,355 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 8 107,826,690 - 107,838,186 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 8 107,826,424 - 107,838,339 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 8 107,251,356 - 107,262,732 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 8 104,443,418 - 104,455,249 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 8 99,539,355 - 99,551,081 (+) NCBI Celera Cytogenetic Map 8 q31 NCBI
DBR1 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 3 138,160,988 - 138,174,921 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 3 138,160,988 - 138,174,949 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 3 137,879,830 - 137,893,763 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 3 139,362,542 - 139,376,463 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 3 139,362,550 - 139,376,471 NCBI Celera 3 136,304,598 - 136,318,559 (-) NCBI Celera Cytogenetic Map 3 q22.3 NCBI HuRef 3 135,254,888 - 135,268,849 (-) NCBI HuRef CHM1_1 3 137,843,634 - 137,857,589 (-) NCBI CHM1_1 T2T-CHM13v2.0 3 140,901,580 - 140,915,511 (-) NCBI T2T-CHM13v2.0
Dbr1 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 9 99,457,839 - 99,467,060 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 9 99,457,852 - 99,466,554 (+) Ensembl GRCm39 Ensembl GRCm38 9 99,575,786 - 99,585,007 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 9 99,575,799 - 99,584,501 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 9 99,476,218 - 99,484,762 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 9 99,385,151 - 99,393,695 (+) NCBI MGSCv36 mm8 Celera 9 99,110,559 - 99,119,100 (+) NCBI Celera Cytogenetic Map 9 E3.3 NCBI cM Map 9 51.86 NCBI
DBR1 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 2 136,065,814 - 136,082,053 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 3 136,068,127 - 136,086,788 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 3 135,188,636 - 135,202,934 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 3 142,639,712 - 142,653,016 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 3 142,639,712 - 142,653,016 (-) Ensembl panpan1.1 panPan2
DBR1 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 23 34,375,691 - 34,388,317 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 23 34,376,228 - 34,388,263 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 23 34,368,284 - 34,380,893 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 23 34,915,650 - 34,928,302 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 23 34,915,650 - 34,928,278 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 23 34,597,534 - 34,610,147 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 23 34,662,956 - 34,675,492 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 23 34,913,997 - 34,926,603 (-) NCBI UU_Cfam_GSD_1.0
Dbr1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
DBR1 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 13 78,958,218 - 78,970,137 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 13 78,958,301 - 78,970,250 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 13 86,477,860 - 86,480,220 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
DBR1 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 15 52,367,197 - 52,381,076 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 15 52,367,357 - 52,380,227 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666041 25,381,120 - 25,394,996 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Dbr1 (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 127 Count of miRNA genes: 100 Interacting mature miRNAs: 106 Transcripts: ENSRNOT00000019769 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
1300177 Cm2 Cardiac mass QTL 2 3.65 heart mass (VT:0007028) heart weight (CMO:0000017) 8 54259986 100382532 Rat 1549909 Stresp11 Stress response QTL 11 6.83 0.0019 stress-related behavior trait (VT:0010451) number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960) 8 73473045 118473045 Rat 1554321 Bmd3 Bone mineral density QTL 3 7.9 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 8 40952565 123900184 Rat 9590292 Uminl3 Urine mineral level QTL 3 3.62 0.001 urine mineral amount (VT:0015086) urine electrolyte level (CMO:0000593) 8 71888757 116888757 Rat 1578769 Uae31 Urinary albumin excretion QTL 31 3.3 0.001 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 8 30848154 101699754 Rat 738011 Anxrr9 Anxiety related response QTL 9 6.1 exploratory behavior trait (VT:0010471) number of entries into a discrete space in an experimental apparatus (CMO:0000960) 8 93535351 123900184 Rat 8693654 Alc32 Alcohol consumption QTL 32 2 0.755 drinking behavior trait (VT:0001422) calculated ethanol drink intake rate (CMO:0001615) 8 88612425 107550209 Rat 1358912 Bw51 Body weight QTL 51 2.95 body mass (VT:0001259) body weight (CMO:0000012) 8 51351728 107062046 Rat 1578765 Klgr1 Kidney lesion grade QTL 1 3.3 0.0001 kidney morphology trait (VT:0002135) organ lesion measurement (CMO:0000677) 8 30848154 101699754 Rat 738014 Anxrr15 Anxiety related response QTL 15 3.6 0.005 locomotor behavior trait (VT:0001392) amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) 8 95718998 123900184 Rat 1300171 Bp184 Blood pressure QTL 184 3.66 arterial blood pressure trait (VT:2000000) blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) 8 70513503 118219066 Rat 1578755 Pur5 Proteinuria QTL 5 3.3 0.0001 urine total protein amount (VT:0000032) urine total protein excretion rate (CMO:0000756) 8 30848154 101699754 Rat 2313400 Anxrr25 Anxiety related response QTL 25 aggression-related behavior trait (VT:0015014) tameness/aggressiveness composite score (CMO:0002136) 8 89265192 114019816 Rat 2303171 Bp331 Blood pressure QTL 331 5.57 0.005 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 61290298 119084929 Rat 631210 Bw3 Body weight QTL3 5.9 mesenteric fat pad mass (VT:0010427) mesenteric fat pad weight to body weight ratio (CMO:0000654) 8 69349194 112783834 Rat 1358903 Bp252 Blood pressure QTL 252 7 0.0001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 93965141 123900184 Rat 8694446 Bw170 Body weight QTL 170 12.07 0.001 retroperitoneal fat pad mass (VT:0010430) retroperitoneal fat pad weight to body weight ratio (CMO:0000635) 8 71888757 116888757 Rat 631650 Stl6 Serum triglyceride level QTL 6 4 0.0019 blood triglyceride amount (VT:0002644) plasma triglyceride level (CMO:0000548) 8 10378157 112202585 Rat 631653 Bp125 Blood pressure QTL 125 3.3 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 66142385 111142385 Rat 1581557 Eae16 Experimental allergic encephalomyelitis QTL 16 3.8 nervous system integrity trait (VT:0010566) experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) 8 8462195 110921472 Rat 724539 Cm19 Cardiac mass QTL 19 2.6 heart mass (VT:0007028) calculated heart weight (CMO:0000073) 8 100149864 120994388 Rat 70197 BpQTLcluster8 Blood pressure QTL cluster 8 3.482 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 46531639 119088626 Rat 2316950 Scl66 Serum cholesterol level QTL 66 4.1 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 8 30848259 105647037 Rat 2300182 Bmd56 Bone mineral density QTL 56 5.4 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 8 95718998 123900184 Rat 2300181 Bmd55 Bone mineral density QTL 55 5.7 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 8 76468691 121468691 Rat 1358893 Bp263 Blood pressure QTL 263 5.01 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 93965141 123900184 Rat 8694200 Abfw4 Abdominal fat weight QTL 4 9.07 0.001 visceral adipose mass (VT:0010063) abdominal fat pad weight to body weight ratio (CMO:0000095) 8 71888757 116888757 Rat 8694392 Bw161 Body weight QTL 161 8.06 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 8 71888757 116888757 Rat 61437 Cia6 Collagen induced arthritis QTL 6 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 8 82460758 122812818 Rat
BF397095
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 8 100,150,660 - 100,150,856 (+) MAPPER mRatBN7.2 Rnor_6.0 8 107,838,079 - 107,838,274 NCBI Rnor6.0 Rnor_5.0 8 107,262,625 - 107,262,820 UniSTS Rnor5.0 RGSC_v3.4 8 104,455,142 - 104,455,337 UniSTS RGSC3.4 Celera 8 99,550,974 - 99,551,169 UniSTS RH 3.4 Map 8 1040.59 UniSTS Cytogenetic Map 8 q31 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000019769 ⟹ ENSRNOP00000019769
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 8 100,139,034 - 100,151,030 (+) Ensembl Rnor_6.0 Ensembl 8 107,826,424 - 107,838,339 (+) Ensembl
RefSeq Acc Id:
NM_001109437 ⟹ NP_001102907
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 8 109,018,364 - 109,030,092 (+) NCBI mRatBN7.2 8 100,139,039 - 100,150,768 (+) NCBI Rnor_6.0 8 107,826,690 - 107,838,186 (+) NCBI Rnor_5.0 8 107,251,356 - 107,262,732 (+) NCBI RGSC_v3.4 8 104,443,418 - 104,455,249 (+) RGD Celera 8 99,539,355 - 99,551,081 (+) RGD
Sequence:
TGGCGGGATACGGGCGGGCGGCTTGTCCGCTCTTCTCTGCTGTTCTGCCCGGGCTGCAGGTGCTCGAGGGCGTTGCGTTGGAGTTCCGTGGCCCAACGTCACGATGCGGGTGGCTGTGGCCGGCTGCT GCCACGGCGAGCTGGACAAGATCTACGAGACTCTGGCGCTAGCGGAGCGGCGCGGCCCGGGACCGGTGGATCTCCTTCTGTGCTGTGGCGACTTCCAGGCGGTGCGCAATGAGGCCGACCTGCGCTGC ATGGCCGTGCCGCCCAAATACCGCCACATGCAGACCTTCTACCGATACTACTCTGGAGAGAAAAAGGCCCCGGTTCTCACCATCTTCATTGGAGGAAACCATGAAGCTTCAAACCATTTGCAAGAGTT ACCCTATGGTGGCTGGGTGGCGCCAAATATTTACTATTTAGGTTTGGCTGGTGTTGTCAAATACCGAGGAGTAAGGATTGGTGGCATCTCTGGCATATTTAAATCTCATGACTATCGAAAAGGTCATT TTGAGTGTCCCCCTTATAATTCGTCTACCATAAGGAGTATATATCATGTGAGAAATATAGAGGTCTACAAATTAAAACAGTTAAAGCAGCCTGTACATATATTCTTATCTCATGATTGGCCAAGAAAT ATATATCATTATGGAAATAAGAAGCAACTTCTTAAGACCAAATCTTTTTTCCGCCAAGAGGTGGAAAATAGCACACTAGGAAGTCCCGCTGCCTCGGAGCTGCTAGAGCACCTAAAGCCCGCATACTG GTTCTCGGCACACCTACACGTGAAGTTTGCGGCCTTGATGCAGCATCAGGCCACAGATAAAGAACAAGCAGGCAAGGAAACCAAGTTTTTAGCCTTGGACAAGTGCTTGCCACACAGAGACTTTCTTC AGGTGTTAGAGATAGAACATGACCCCAGTGCTCCTGAGTACTTAGAGTACGACGTTGAATGGCTTGCTGTCCTCAGGGCCACTGATGACCTGATGAATGTGACTGGGGGCCTATGGAATATGCCTGAA AACAATGGTCTGCATACAAGGTGGGATTATAGTGCAACCGAAGAAGCCATGAAAGACGTAATGGAGAAATTGAACCATGACCCCAGAATCCCCTGTAACTTCAGCATGACAGCTGCTTGTTATGATCC TAGTAAGCCACAGACACAAGTGCAGCTGGTGCACAGGATCAGTCCGCAGACTACTAAATTCTGTGCCCAGCTTGGCATCACAGACATTAACGTCATGATTCAGAAGGCCAAGGAAGAGCATCATCTGT GTGGTGAATATGTACAGCAGGGTGATCTGGGGACTGATGACTCTGAGGAGGACCGGAGTGAATACAACACAGACACGTCTGCCCTGTCCTCCATTAATCCAGATGAAATAATGTTGGATGAGGAAGAG GAAGAGGAGGAAGCTGTAAGTACCCATAGTGACATGAACACGCCTTCTGTGGAACCTTCTTCTGATCAAGCTTCTGACCTCTCCACAAGCTTTTCTGACATCAGGAACTTACCAAGTTCCATGTTTGT GTCTTCTGATGATGCCTCCCGTTCTCCAGCTAGTGAGGAGGGGAAATCTGGTGAAACTGTAGAGTGTGGGGATGAAAAAGACTTGGTTGAGTTTTCAGTGAAGAGGCTTAGTAATGAACACGAACCTG AACAAAGGAAGAGGATAAAGAGGAGGAACCAGGCCATCTACGCTGCAGTGGATGACGAGGATGCCAACGATGAGTAGGACAGAGGACTTGATGTGGTAAATACAGATGTATGATTTCAAGACCCGATT TTTAGCACAGAATTTCTGATTTAATGACTGGACTTTGTAATAATGAAATGATGGAATTTTGGTTATATGTTCTGTATTTAGGTGTATGTTTATATGATTCAGATATATACTTATTAAAATTTCATATG AAATTTGAAAAAAAAAAAAAAA
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RefSeq Acc Id:
NP_001102907 ⟸ NM_001109437
- UniProtKB:
B2RYJ2 (UniProtKB/TrEMBL), A6I2E0 (UniProtKB/TrEMBL), F7FLJ5 (UniProtKB/TrEMBL)
- Sequence:
MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSGEKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRIGGISGIFK SHDYRKGHFECPPYNSSTIRSIYHVRNIEVYKLKQLKQPVHIFLSHDWPRNIYHYGNKKQLLKTKSFFRQEVENSTLGSPAASELLEHLKPAYWFSAHLHVKFAALMQHQATDKEQAGKETKFLALDK CLPHRDFLQVLEIEHDPSAPEYLEYDVEWLAVLRATDDLMNVTGGLWNMPENNGLHTRWDYSATEEAMKDVMEKLNHDPRIPCNFSMTAACYDPSKPQTQVQLVHRISPQTTKFCAQLGITDINVMIQ KAKEEHHLCGEYVQQGDLGTDDSEEDRSEYNTDTSALSSINPDEIMLDEEEEEEEAVSTHSDMNTPSVEPSSDQASDLSTSFSDIRNLPSSMFVSSDDASRSPASEEGKSGETVECGDEKDLVEFSVK RLSNEHEPEQRKRIKRRNQAIYAAVDDEDANDE
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Ensembl Acc Id:
ENSRNOP00000019769 ⟸ ENSRNOT00000019769
RGD ID: 13696212
Promoter ID: EPDNEW_R6737
Type: multiple initiation site
Name: Dbr1_1
Description: debranching RNA lariats 1
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 8 107,826,682 - 107,826,742 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2013-09-16
Dbr1
debranching RNA lariats 1
Dbr1
debranching enzyme homolog 1 (S. cerevisiae)
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2009-06-15
Dbr1
debranching enzyme homolog 1 (S. cerevisiae)
Dbr1_predicted
debranching enzyme homolog 1 (S. cerevisiae) (predicted)
Data merged from RGD:1311917
1643240
APPROVED
2008-03-05
Dbr1
debranching enzyme homolog 1 (S. cerevisiae)
LOC681234
similar to debranching enzyme homolog 1
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-01-09
LOC681234
similar to debranching enzyme homolog 1
LOC683696
similar to debranching enzyme homolog 1
Data merged from RGD:1584458
1643240
APPROVED
2006-11-20
LOC681234
similar to debranching enzyme homolog 1
Symbol and Name status set to provisional
70820
PROVISIONAL
2006-11-19
LOC683696
similar to debranching enzyme homolog 1
Symbol and Name status set to provisional
70820
PROVISIONAL
2005-01-12
Dbr1_predicted
debranching enzyme homolog 1 (S. cerevisiae) (predicted)
Symbol and Name status set to approved
70820
APPROVED