DBR1 (debranching RNA lariats 1) - Rat Genome Database

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Gene: DBR1 (debranching RNA lariats 1) Sus scrofa
Analyze
Symbol: DBR1
Name: debranching RNA lariats 1
RGD ID: 14026665
Description: ENCODES a protein that exhibits hydrolase activity (inferred); hydrolase activity, acting on ester bonds (inferred); metal ion binding (inferred); INVOLVED IN mRNA splicing, via spliceosome (ortholog); RNA fragment catabolic process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); ENCEPHALITIS, ACUTE, INFECTION (VIRAL)-INDUCED, SUSCEPTIBILITY TO, 11 (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lariat debranching enzyme
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1378,958,218 - 78,970,137 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11378,958,301 - 78,970,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,477,860 - 86,480,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
DBR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1378,958,218 - 78,970,137 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11378,958,301 - 78,970,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,477,860 - 86,480,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DBR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,160,988 - 138,174,921 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3138,160,988 - 138,174,949 (-)EnsemblGRCh38hg38GRCh38
GRCh373137,879,830 - 137,893,763 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,362,542 - 139,376,463 (-)NCBINCBI36Build 36hg18NCBI36
Build 343139,362,550 - 139,376,471NCBI
Celera3136,304,598 - 136,318,559 (-)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,254,888 - 135,268,849 (-)NCBIHuRef
CHM1_13137,843,634 - 137,857,589 (-)NCBICHM1_1
T2T-CHM13v2.03140,901,580 - 140,915,511 (-)NCBIT2T-CHM13v2.0
Dbr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39999,457,839 - 99,467,060 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl999,457,852 - 99,466,554 (+)EnsemblGRCm39 Ensembl
GRCm38999,575,786 - 99,585,007 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,575,799 - 99,584,501 (+)EnsemblGRCm38mm10GRCm38
MGSCv37999,476,218 - 99,484,762 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36999,385,151 - 99,393,695 (+)NCBIMGSCv36mm8
Celera999,110,559 - 99,119,100 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.86NCBI
Dbr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88109,018,364 - 109,030,092 (+)NCBIGRCr8
mRatBN7.28100,139,039 - 100,150,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,139,034 - 100,151,030 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8105,805,842 - 105,817,525 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08104,005,138 - 104,016,821 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,847,672 - 101,859,355 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,826,690 - 107,838,186 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,826,424 - 107,838,339 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08107,251,356 - 107,262,732 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48104,443,418 - 104,455,249 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera899,539,355 - 99,551,081 (+)NCBICelera
Cytogenetic Map8q31NCBI
DBR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22136,065,814 - 136,082,053 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13136,068,127 - 136,086,788 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03135,188,636 - 135,202,934 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13142,639,712 - 142,653,016 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3142,639,712 - 142,653,016 (-)Ensemblpanpan1.1panPan2
DBR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,375,691 - 34,388,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,376,228 - 34,388,263 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2334,368,284 - 34,380,893 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02334,915,650 - 34,928,302 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2334,915,650 - 34,928,278 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12334,597,534 - 34,610,147 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02334,662,956 - 34,675,492 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02334,913,997 - 34,926,603 (-)NCBIUU_Cfam_GSD_1.0
Dbr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560273,766,245 - 73,776,137 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936540505,619 - 515,964 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936540504,638 - 515,913 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DBR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11552,367,197 - 52,381,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1552,367,357 - 52,380,227 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604125,381,120 - 25,394,996 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dbr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,681,730 - 14,711,368 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473014,682,951 - 14,693,450 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DBR1
165 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000059701   ⟹   ENSSSCP00000056429
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1378,958,218 - 78,970,137 (-)Ensembl
RefSeq Acc Id: XM_021069502   ⟹   XP_020925161
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11378,958,301 - 78,970,250 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020925161   ⟸   XM_021069502
- UniProtKB: A0A287BJ76 (UniProtKB/TrEMBL),   A0A4X1TKA7 (UniProtKB/TrEMBL),   A0A8D1NIX7 (UniProtKB/TrEMBL),   A0A8D0ZY24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000056429   ⟸   ENSSSCT00000059701

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005027879 UniProtKB/TrEMBL
  ENSSSCG00015009412 UniProtKB/TrEMBL
  ENSSSCG00025000983 UniProtKB/TrEMBL
  ENSSSCG00030052713 UniProtKB/TrEMBL
  ENSSSCG00035039804 UniProtKB/TrEMBL
  ENSSSCG00040026014 UniProtKB/TrEMBL
  ENSSSCG00050064586 UniProtKB/TrEMBL
  ENSSSCG00055029109 UniProtKB/TrEMBL
  ENSSSCG00060043754 UniProtKB/TrEMBL
  ENSSSCG00065050807 UniProtKB/TrEMBL
  ENSSSCG00070009577 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059701 ENTREZGENE
  ENSSSCT00000059701.3 UniProtKB/TrEMBL
  ENSSSCT00005044330.1 UniProtKB/TrEMBL
  ENSSSCT00015012403.1 UniProtKB/TrEMBL
  ENSSSCT00025001166.1 UniProtKB/TrEMBL
  ENSSSCT00025001187.1 UniProtKB/TrEMBL
  ENSSSCT00030073509.1 UniProtKB/TrEMBL
  ENSSSCT00035052858.1 UniProtKB/TrEMBL
  ENSSSCT00035052866.1 UniProtKB/TrEMBL
  ENSSSCT00040034754.1 UniProtKB/TrEMBL
  ENSSSCT00040034812.1 UniProtKB/TrEMBL
  ENSSSCT00050087944.1 UniProtKB/TrEMBL
  ENSSSCT00050087949.1 UniProtKB/TrEMBL
  ENSSSCT00055057812.1 UniProtKB/TrEMBL
  ENSSSCT00055057845.1 UniProtKB/TrEMBL
  ENSSSCT00060059341.1 UniProtKB/TrEMBL
  ENSSSCT00060059347.1 UniProtKB/TrEMBL
  ENSSSCT00065069587.1 UniProtKB/TrEMBL
  ENSSSCT00065069596.1 UniProtKB/TrEMBL
  ENSSSCT00070018571.1 UniProtKB/TrEMBL
  ENSSSCT00070018577.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.21.10 UniProtKB/TrEMBL
InterPro Calcineurin-like_PHP_ApaH UniProtKB/TrEMBL
  DBR1_C UniProtKB/TrEMBL
  Dbr1_N UniProtKB/TrEMBL
  Metallo-depent_PP-like UniProtKB/TrEMBL
NCBI Gene DBR1 ENTREZGENE
PANTHER LARIAT DEBRANCHING ENZYME UniProtKB/TrEMBL
  RNA LARIAT DEBRANCHING ENZYME UniProtKB/TrEMBL
Pfam DBR1 UniProtKB/TrEMBL
  Metallophos UniProtKB/TrEMBL
SMART DBR1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56300 UniProtKB/TrEMBL
UniProt A0A287BJ76 ENTREZGENE
  A0A4X1TJY6_PIG UniProtKB/TrEMBL
  A0A4X1TKA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZY24 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1E134_PIG UniProtKB/TrEMBL
  A0A8D1NIX7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BJ76 UniProtKB/TrEMBL
VGNC ID VGNC:87168 ENTREZGENE