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Gene: Tafa4 (TAFA chemokine like family member 4) Rattus norvegicus

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Symbol:

Tafa4

Name:

TAFA chemokine like family member 4

RGD ID:

1597443

Description:

Predicted to enable receptor ligand activity. Predicted to be involved in several processes, including macrophage chemotaxis; phagocytosis; and superoxide anion generation. Predicted to act upstream of or within regulation of membrane potential and regulation of sensory perception of pain. Predicted to be active in extracellular space; glutamatergic synapse; and synaptic vesicle membrane. Orthologous to human TAFA4 (TAFA chemokine like family member 4); INTERACTS WITH 1-naphthyl isothiocyanate; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

chemokine-like protein TAFA-4; Fam19a4; family with sequence similarity 19 (chemokine (C-C motif)-like), member A4; family with sequence similarity 19 member A4, C-C motif chemokine like; family with sequence similarity 19, member A4; LOC689043; similar to TAFA4 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	130,994,166 - 131,228,032 (-)	NCBI		GRCr8
mRatBN7.2	4	129,437,466 - 129,671,320 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	129,437,467 - 129,671,249 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	134,863,098 - 135,096,081 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	130,644,141 - 130,877,121 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	129,262,104 - 129,495,081 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	129,196,658 - 129,430,438 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	129,196,659 - 129,430,251 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	193,702,284 - 193,933,576 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	131,539,009 - 131,783,777 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	118,319,911 - 118,547,558 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tafa4	Rat	Breast Neoplasms		ISO	TAFA4 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:15818620

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tafa4	Rat	1-naphthyl isothiocyanate	increases expression	EXP		6480464	1-Naphthylisothiocyanate results in increased expression of TAFA4 mRNA	CTD	PMID:30723492
Tafa4	Rat	17beta-hydroxy-5alpha-androstan-3-one	increases expression	ISO	TAFA4 (Homo sapiens)	6480464	Dihydrotestosterone results in increased expression of TAFA4 mRNA	CTD	PMID:29581250
Tafa4	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	TAFA4 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in decreased expression of TAFA4 mRNA	CTD	PMID:20106945 and PMID:21632981
Tafa4	Rat	3-chloropropane-1,2-diol	decreases expression	EXP		6480464	alpha-Chlorohydrin results in decreased expression of TAFA4 mRNA	CTD	PMID:28522335
Tafa4	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of TAFA4 mRNA	CTD	PMID:24780913
Tafa4	Rat	aflatoxin B1	decreases expression	ISO	TAFA4 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased expression of TAFA4 mRNA	CTD	PMID:21641981
Tafa4	Rat	benzo[a]pyrene	decreases expression	ISO	TAFA4 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of TAFA4 mRNA	CTD	PMID:20106945 and PMID:21632981
Tafa4	Rat	benzo[a]pyrene	increases methylation	ISO	TAFA4 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of TAFA4 exon and Benzo(a)pyrene results in increased methylation of TAFA4 promoter	CTD	PMID:27901495
Tafa4	Rat	benzo[a]pyrene	decreases methylation	ISO	Tafa4 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased methylation of FAM19A4 5' UTR more ...	CTD	PMID:27901495
Tafa4	Rat	benzo[a]pyrene	affects methylation	ISO	TAFA4 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of FAM19A4 5' UTR	CTD	PMID:27901495
Tafa4	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	TAFA4 (Homo sapiens)	6480464	Diethylhexyl Phthalate results in increased expression of TAFA4 mRNA	CTD	PMID:31163220
Tafa4	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	Tafa4 (Mus musculus)	6480464	Diethylhexyl Phthalate results in increased expression of FAM19A4 mRNA	CTD	PMID:34319233
Tafa4	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of TAFA4 mRNA	CTD	PMID:25181051
Tafa4	Rat	bisphenol A	decreases methylation	ISO	TAFA4 (Homo sapiens)	6480464	bisphenol A results in decreased methylation of TAFA4 gene	CTD	PMID:31601247
Tafa4	Rat	CGP 52608	multiple interactions	ISO	TAFA4 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to FAM19A4 gene]	CTD	PMID:28238834
Tafa4	Rat	cyclosporin A	decreases expression	ISO	TAFA4 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of TAFA4 mRNA	CTD	PMID:25562108
Tafa4	Rat	dorsomorphin	multiple interactions	ISO	TAFA4 (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Tafa4	Rat	entinostat	increases expression	ISO	TAFA4 (Homo sapiens)	6480464	entinostat results in increased expression of TAFA4 mRNA	CTD	PMID:26272509
Tafa4	Rat	entinostat	multiple interactions	ISO	TAFA4 (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TAFA4 mRNA	CTD	PMID:27188386
Tafa4	Rat	ethanol	increases expression	ISO	TAFA4 (Homo sapiens)	6480464	Ethanol results in increased expression of TAFA4 mRNA	CTD	PMID:31059573
Tafa4	Rat	fonofos	increases methylation	ISO	TAFA4 (Homo sapiens)	6480464	Fonofos results in increased methylation of TAFA4 promoter	CTD	PMID:22847954
Tafa4	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of TAFA4 gene	CTD	PMID:35440735
Tafa4	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of TAFA4 mRNA	CTD	PMID:30723492
Tafa4	Rat	parathion	increases methylation	ISO	TAFA4 (Homo sapiens)	6480464	Parathion results in increased methylation of TAFA4 promoter	CTD	PMID:22847954
Tafa4	Rat	quercetin	decreases expression	ISO	TAFA4 (Homo sapiens)	6480464	Quercetin results in decreased expression of TAFA4 mRNA	CTD	PMID:21632981
Tafa4	Rat	SB 431542	multiple interactions	ISO	TAFA4 (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Tafa4	Rat	sodium arsenite	decreases expression	ISO	Tafa4 (Mus musculus)	6480464	sodium arsenite results in decreased expression of TAFA4 mRNA	CTD	PMID:37682722
Tafa4	Rat	terbufos	increases methylation	ISO	TAFA4 (Homo sapiens)	6480464	terbufos results in increased methylation of TAFA4 promoter	CTD	PMID:22847954
Tafa4	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of TAFA4 mRNA	CTD	PMID:30723492 and PMID:31150632
Tafa4	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of TAFA4 mRNA	CTD	PMID:34492290
Tafa4	Rat	titanium dioxide	decreases expression	ISO	Tafa4 (Mus musculus)	6480464	titanium dioxide results in decreased expression of TAFA4 mRNA	CTD	PMID:35295148
Tafa4	Rat	trichostatin A	increases expression	ISO	TAFA4 (Homo sapiens)	6480464	trichostatin A results in increased expression of TAFA4 mRNA	CTD	PMID:24935251
Tafa4	Rat	triclosan	decreases expression	ISO	TAFA4 (Homo sapiens)	6480464	Triclosan results in decreased expression of TAFA4 mRNA	CTD	PMID:30510588
Tafa4	Rat	valproic acid	affects expression	ISO	TAFA4 (Homo sapiens)	6480464	Valproic Acid affects the expression of TAFA4 mRNA	CTD	PMID:25979313
Tafa4	Rat	valproic acid	increases expression	ISO	TAFA4 (Homo sapiens)	6480464	Valproic Acid results in increased expression of TAFA4 mRNA	CTD	PMID:23179753 more ...
Tafa4	Rat	valproic acid	multiple interactions	ISO	TAFA4 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TAFA4 mRNA	CTD	PMID:27188386
Tafa4	Rat	valproic acid	increases expression	EXP		6480464	Valproic Acid results in increased expression of TAFA4 mRNA	CTD	PMID:35594946

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tafa4	Rat	macrophage chemotaxis	involved_in	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	macrophage chemotaxis	involved_in	IBA	MGI:2444563 and PANTHER:PTN000788808	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Tafa4	Rat	macrophage chemotaxis	involved_in	ISO	Tafa4 (Mus musculus)	1624291	PMID:25109685	RGD	PMID:25109685
Tafa4	Rat	phagocytosis	involved_in	ISO	Tafa4 (Mus musculus)	1624291	PMID:25109685	RGD	PMID:25109685
Tafa4	Rat	phagocytosis	involved_in	IBA	MGI:2444563 and PANTHER:PTN000788808	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Tafa4	Rat	phagocytosis	involved_in	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	regulation of membrane potential	acts_upstream_of_or_within	ISO	Tafa4 (Mus musculus)	1624291	PMID:24139797	RGD	PMID:24139797
Tafa4	Rat	regulation of membrane potential	acts_upstream_of_or_within	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	regulation of sensory perception of pain	acts_upstream_of_or_within	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	regulation of sensory perception of pain	acts_upstream_of_or_within	ISO	Tafa4 (Mus musculus)	1624291	PMID:24139797	RGD	PMID:24139797
Tafa4	Rat	regulation of signaling receptor activity	involved_in	ISO	Tafa4 (Mus musculus)	1624291	PMID:25109685	RGD	PMID:25109685
Tafa4	Rat	signal transduction	involved_in	IEA	GO:0048018	1600115	GO_REF:0000108	GOC	GO_REF:0000108
Tafa4	Rat	superoxide anion generation	involved_in	ISO	Tafa4 (Mus musculus)	1624291	PMID:25109685	RGD	PMID:25109685
Tafa4	Rat	superoxide anion generation	involved_in	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tafa4	Rat	extracellular space	located_in	ISO	TAFA4 (Homo sapiens)	1624291	PMID:29453251	RGD	PMID:29453251
Tafa4	Rat	extracellular space	located_in	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	extracellular space	located_in	ISO	Tafa4 (Mus musculus)	1624291	PMID:25109685	RGD	PMID:25109685
Tafa4	Rat	extracellular space	located_in	IEA	UniProtKB:Q96LR4 and ensembl:ENSP00000295569	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	extracellular space	is_active_in	IBA	MGI:2443695 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Tafa4	Rat	glutamatergic synapse	is_active_in	ISO	Tafa4 (Mus musculus)	1624291	PMID:32306148	RGD	PMID:32306148
Tafa4	Rat	glutamatergic synapse	is_active_in	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Tafa4	Rat	synaptic vesicle membrane	is_active_in	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	synaptic vesicle membrane	is_active_in	ISO	Tafa4 (Mus musculus)	1624291	PMID:32306148	RGD	PMID:32306148

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tafa4	Rat	protein binding	enables	ISO	TAFA4 (Homo sapiens)	1624291	UniProtKB:Q92624 and PMID:25416956	RGD	PMID:25416956
Tafa4	Rat	receptor ligand activity	enables	IBA	MGI:2443695 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Tafa4	Rat	receptor ligand activity	enables	IEA	UniProtKB:Q7TPG5 and ensembl:ENSMUSP00000086710	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Tafa4	Rat	receptor ligand activity	enables	ISO	Tafa4 (Mus musculus)	1624291	PMID:25109685	RGD	PMID:25109685

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:24139797	PMID:25109685

Tafa4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	130,994,166 - 131,228,032 (-)	NCBI		GRCr8
mRatBN7.2	4	129,437,466 - 129,671,320 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	129,437,467 - 129,671,249 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	134,863,098 - 135,096,081 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	130,644,141 - 130,877,121 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	129,262,104 - 129,495,081 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	129,196,658 - 129,430,438 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	129,196,659 - 129,430,251 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	193,702,284 - 193,933,576 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	131,539,009 - 131,783,777 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	118,319,911 - 118,547,558 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

TAFA4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	68,731,766 - 68,932,547 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	68,731,766 - 68,953,297 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	68,780,917 - 68,981,698 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	68,863,607 - 69,064,401 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	68,863,607 - 69,064,401	NCBI
Celera	3	68,709,246 - 68,909,796 (-)	NCBI		Celera
Cytogenetic Map	3	p14.1	NCBI
HuRef	3	68,782,334 - 68,982,838 (-)	NCBI		HuRef
CHM1_1	3	68,723,972 - 68,924,498 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	68,769,008 - 68,969,284 (-)	NCBI		T2T-CHM13v2.0

Tafa4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	96,808,167 - 97,037,452 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	96,808,164 - 97,037,374 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	96,831,206 - 97,060,411 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	96,831,203 - 97,060,413 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	96,781,203 - 97,010,405 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	96,796,672 - 97,025,874 (-)	NCBI		MGSCv36	mm8
Celera	6	98,692,988 - 98,920,973 (-)	NCBI		Celera
Cytogenetic Map	6	D3	NCBI
cM Map	6	44.8	NCBI

Tafa4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	18,920,551 - 19,083,915 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	18,920,551 - 19,083,792 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAFA4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	68,686,850 - 68,888,064 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	68,691,637 - 68,891,542 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	68,666,666 - 68,867,917 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	70,034,273 - 70,234,376 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	70,035,940 - 70,186,928 (-)	Ensembl	panpan1.1		panPan2

TAFA4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	22,843,151 - 22,963,722 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	22,837,094 - 22,962,831 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	22,771,694 - 22,937,923 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	22,822,741 - 22,993,879 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	22,822,709 - 22,993,874 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	22,516,744 - 22,689,385 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	22,860,046 - 23,027,518 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	22,930,485 - 23,095,589 (+)	NCBI		UU_Cfam_GSD_1.0

TAFA4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	50,142,700 - 50,353,424 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	50,142,679 - 50,353,448 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	55,225,682 - 55,435,345 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TAFA4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	29,764,294 - 29,957,792 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	136,834,713 - 137,029,530 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tafa4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624773	3,207,120 - 3,495,438 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624773	3,207,277 - 3,495,379 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Tafa4
921 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	710
Count of miRNA genes:	299
Interacting mature miRNAs:	382
Transcripts:	ENSRNOT00000067881
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	96731383	141731383	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	107346299	152346299	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	92406430	137406430	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	117737142	152833657	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	108206096	153206096	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	113634167	149763391	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	88883695	133883695	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
12798527	Anxrr58	Anxiety related response QTL 58	4.11	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	121020385	148834277	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	88883695	133883695	Rat

D4Got150

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	129,667,204 - 129,667,292 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	129,426,207 - 129,426,294	NCBI	Rnor6.0
Rnor_5.0	4	193,929,532 - 193,929,619	UniSTS	Rnor5.0
RGSC_v3.4	4	131,779,732 - 131,779,820	RGD	RGSC3.4
RGSC_v3.4	4	131,779,733 - 131,779,820	UniSTS	RGSC3.4
RGSC_v3.1	4	132,024,574 - 132,024,661	RGD
Celera	4	118,543,514 - 118,543,601	UniSTS
RH 3.4 Map	4	794.3	UniSTS
RH 3.4 Map	4	794.3	RGD
RH 2.0 Map	4	869.5	RGD
Cytogenetic Map	4	q34	UniSTS

AU047656

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	129,444,645 - 129,444,831 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	129,203,609 - 129,203,794	NCBI	Rnor6.0
Rnor_5.0	4	193,709,177 - 193,709,362	UniSTS	Rnor5.0
RGSC_v3.4	4	131,548,570 - 131,548,755	UniSTS	RGSC3.4
Celera	4	118,327,101 - 118,327,286	UniSTS
Cytogenetic Map	4	q34	UniSTS

AU047640

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	131,001,287 - 131,001,547 (+)	Marker Load Pipeline
mRatBN7.2	4	129,444,589 - 129,444,848 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	129,203,553 - 129,203,811	NCBI	Rnor6.0
Rnor_5.0	4	193,709,121 - 193,709,379	UniSTS	Rnor5.0
RGSC_v3.4	4	131,548,514 - 131,548,772	UniSTS	RGSC3.4
Celera	4	118,327,045 - 118,327,303	UniSTS
Cytogenetic Map	4	q34	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	8	104	43	41	25	15	25	5	68	30	93	4	49	16


RefSeq Transcripts	NM_001134700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC160856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067881 ⟹ ENSRNOP00000061075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	129,437,467 - 129,671,249 (-)	Ensembl
Rnor_6.0 Ensembl	4	129,196,659 - 129,430,251 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111225 ⟹ ENSRNOP00000077857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	129,437,703 - 129,671,249 (-)	Ensembl

RefSeq Acc Id:

NM_001134700 ⟹ NP_001128172

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	130,994,166 - 131,227,940 (-)	NCBI
mRatBN7.2	4	129,437,466 - 129,671,249 (-)	NCBI
Rnor_6.0	4	129,196,658 - 129,430,251 (-)	NCBI
Rnor_5.0	4	193,702,284 - 193,933,576 (-)	NCBI
RGSC_v3.4	4	131,539,009 - 131,783,777 (-)	RGD
Celera	4	118,319,911 - 118,547,558 (-)	RGD

Sequence:

show sequence

CTCCTTTAAAACACCGCGCTTCCCACGGTCTCTTCGGCTTCTCTTTGCAGCAGCACCGGAACTTTTCCCACTTTTGGCCGTACTAAGAGGGCGATGGGCTGTTCCAGAGGCTCTTGTGGGCAAGCGGC
CAGCTGAGCATCCTTTGGCTTCAGTGCTGTGATCAGCGTTCGTTCTGGACTCCCGGATCTGACTCGGCTACTCTTTCTAGACTAACAGGTCTTCCAAGCCCCAGTAGTTTTGTGGAGCTGCAGATATG
GTTGGTCCCAGCTACAAAGGGACGTTCACGGTCACTCTCCAGGATCTTCTTGAGTAACAGTGTTTGACTGGAACCACGGACTGTGAACTCTCCAAGGATGAGAGTCTGCACTAAGTGGGTGCTGCTGT
CTCACTGGCTGGTTCTGGCCTACATGTTAATGGTCTGCTGTAAGCTGATGTCCGCCTCGAGCCAGCACCTCCGGGGACATGCAGGTCACCATGTGATCAAGCAAGGTACGTGTGAGGTGGTCGCTGTG
CACCGCTGCTGCAATAAGAACCGCATAGAGGAGCGCTCTCAGACGGTCAAGTGTTCCTGCTTCCCAGGTCAGGTGGCTGGCACAACTCGGGCACAGCCTTCTTGTGTTGAAGCTTCCATTGTGATTGA
GAAGTGGTGGTGCCACATGGATCCTTGCTTGGAAGGAGAGGACTGTAAAGTGCTTCCGGACTCCTCTGGTTGGTCCTGTAGCAGTGGCAATAAAGTCAAAACCACAAAGGTGACCCGGTAGCAGACAC
AGAAGTGTTTGACTCCGAGGGGCATCAGGATGCAGAGCTGTGCTGTGTGGATTACCAGACGAGTGAGAGCTCAACCTCGGAACTCCCTCAGGAGTTCGTAGCTGCAGTATGAGCATTGTAGAAAGTGG
CATTTACATGACTGTCCCTGGTTCTCTGCTCCGTGATCTCATCAAACTGAACTACTGCTGCAGGTGACCACTCAACTGACGTGCTACCTGGACCTCCAAAGGAGCCCAGCACAAGACATGCTGGAGGG
GACATCGGAGGTGCCAATGTGGAGCAGTGCTGGGAGAGCCTGGCTCTTCTCATTCTCCTTTTCCCAAGGAACATGGACAGGAAGCACAAAGGGACCCAGGCTGTTCCTTTAATTGTGTCCTTTAGACA
TTGTGCAGAAGGCATGACGGGAGTCTAAATGACAGAAGACTTGGCTCACATACGTGTGTTATAGATTAAAGAACTCAAATTATCTGGTGCAGGAAATTCATTATATGAACTTTGGAGAGTGGAAGGAC
TCGTTGGGTTACTATGTGTGCATTTGGATTTTTTACTTTTGATAACTTCACATGTTTATCCTCTTAGTTCCATTCCTACTTTAGCGGAGATGCAGCAGAAGCTTTTTAACCCTGGTACACTGGCGGCT
GAGTTCTAAGGAAAGCATAGTAGCACCAGGGTTTTATAACCAAAGCTTTCTCATGACATATTCACAAAGGAACTTAAACCTGCTGGAGTTTTTATGGCTTGAGAGTAACCAGATAGGAAGATCATTTA
AGACATAGGACAGTCTCTGTTTAGAGGAAGGGTGATTTCTTAGATCCACTTTATGCCAATTCTATGGAAATATTTGAATTATCTCCTAGAAGGAGTCTTTAAATGCTAACTATTCACATTACAGTTGA
TGCGAGCCTAACAGGGACCCTTCTGTACCCACTTGTCAGCTTTCTTACTTCTTTAAATGCTTAGTAAAACCTCAGTCATCTCCCCTCCTATTTTGGTGATTTCATAGATTACTGCCATGCAGAAACAT
AAGAAACAGAGAAACTGGCCCAGGTTTGAAATGAGACGTTATTCATGTACTCGAATCTGTAATGTGGGATTGATTGTATGTATTAAGAAATGTTGACAGTATACTTGCTACACCGACTGTCTGTCCTT
TCGAAATTACAAGGAAAGATCGGTTCTATTATGTTGTCTACAGTGCTGTCAATTATTTGATTTTATTCTCACAGAAGAAGTGGAAATGGGTGCTACCTATTTATTGCTTAGACTTTGACTTAAATTTG
ACTGACTGGGTGCCTAACCAGAATAGTTATTCTCATGTGACTAAGTAAAATGTCACTCTGTTGATGGCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017592897 ⟹ XP_017448386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	131,010,381 - 131,208,221 (-)	NCBI
mRatBN7.2	4	129,453,689 - 129,652,819 (-)	NCBI
Rnor_6.0	4	129,196,659 - 129,411,513 (-)	NCBI

Sequence:

show sequence

GCCTTTAAAACTGTGGATGGCCTGAAGTCACGAAACTGACAGTATTGATGTAAAACTCCCTTAGAATCTTAAGAAACCGAGGCTTTGTGCACCATTAAGTGTTTTGGAACTTAGTGGATTTTTACATA
TGCTCATAGCCTGAATCCATGAAGTAGAAGTTTGAAGTTCCCCTATCCACATAGGTCCCTTGTTCCCCTCTTCTCCTCATACCCACTCCTCTCAGGTGACTTGACTAGCATTCTCTGAAGAGCTTTCT
TCTTTCTCTGAAGCTGGATTTAAATGGAAACTCAGAGTGTGTATTCTTCTCCAAGGTTTAGGATCAAGTCTGTTGCCTGGGGCAGGTCTTCATGATCACTGTGTGGGCTTCTACAGTATGAAGAGTTC
ACTCCAACCCACCCTGTGTTAAGTGTGGGAGGGCTGTTGTTCCTTCTAGGTTTGGCTGCTGTGCATAAAGAAAGCTTCTATGAACACTCTCATGCTTGTTTGGTCGATGTGAGCATGCGTTTCTGTAG
CATGGCTTTGCTTTTGAAGGTAATTGTGAGTCAGGTCTACAACTTGCCGGAAGTAATAAATGATAAAAAAAAGAGGACCACAGTAGCCATGGGCTTATTGTGTGTCAAGGATTGTTCCAGATCTTTCC
ATCTCTTCCCCTGTTCCATGGGGATGGGTGGGATTACTGTGCACACAGTGGGGGATGTGAGGTGAAGAAGCTTGCCAAGAGCATCTTTGAAACTTTGATCAGATTAGTAACAAGCAATTTCTCCAAGT
GATTGCCACGCCACAGGACCTCGTGCCAGGAAGAGGGTACGGGAGGAGCAATCAGGAGTGGAGACTGCACTCTGGCAGCTCTTACCCTTTCAGCTGGGGTTGGAACCCAGGCTGCGTGGCTTCGAAGG
CTCTGCTTTAACCTCTGGACTAAATGAATCTGCCTTTTGCAGACACCTCCAGCCCGTCGTATCCAGCAAGCCTGTCTCTGTCTCTCCAACGCTGAGGTTGTAGTTATGAACTGTCATCCCTTGCTTCC
CAGGTTGGCAGTGTTGCCTTCTCCGTTTCCGCTTCCGGTTTCCAGCGGCCATCTTTATTTGGCTGCCCTGCCCCACTAACAGGTGTAAAGGGTGCAGAAAACTGCCTATGGAGAGGCCTGCCTGGATT
GACAGGCTGGCTTCTGTCCCTGCAACTCTCGGCAGACAAGGAAGCTCCTTGGTCAGTCCTCATCCACAGGCAGAGATACCATCAGGTCTTCCAAGCCCCAGTAGTTTTGTGGAGCTGCAGATATGGTT
GGTCCCAGCTACAAAGGGACGTTCACGGTCACTCTCCAGGATCTTCTTGAGTAACAGTGTTTGACTGGAACCACGGACTGTGAACTCTCCAAGGGTTAAGAATTGAGAGTGCTACAACTTGGGTTGGT
AGGGCCTTAGAAGCCAGCCAATGGTGGGGGCATCTCCATGGAGCTGCTGTTACCTGGTCCTCAGAGTTCCAGGAGCAATTTTTCAAGGAAATAGATTCAAGGATGAGAGTCTGCACTAAGTGGGTGCT
GCTGTCTCACTGGCTGGTTCTGGCCTACATGTTAATGGTCTGCTGTAAGCTGATGTCCGCCTCGAGCCAGCACCTCCGGGGACATGCAGGTCACCATGTGATCAAGCAAGGTACGTGTGAGGTGGTCG
CTGTGCACCGCTGCTGCAATAAGAACCGCATAGAGGAGCGCTCTCAGACGGTCAAGTGTTCCTGCTTCCCAGGTCAGGTGGCTGGCACAACTCGGGCACAGCCTTCTTGTGTTGAAGCTTCCATTGTG
ATTGAGAAGTGGTGGTGCCACATGGATCCTTGCTTGGAAGGAGAGGACTGTAAAGTGCTTCCGGACTCCTCTGGTTGGTCCTGTAGCAGTGGCAATAAAGTCAAAACCACAAAGGTGACCCGGTAGCA
GACACAGAAGTGTTTGACTCCGAGGGGCATCAGGATGCAGAGCTGTGCTGTGTGGATTACCAGACGAGTGAGAGCTCAACCTCGGAACTCCCTCAGGAGTTCGTAGCTGCAGTATGAGCATTGTAGAA
AGTGGCATTTACATGACTGTCCCTGGTTCTCTGCTCCGTGATCTCATCAAACTGAACTACTGCTGCAGGTGACCACTCAACTGACGTGCTACCTGGACCTCCAAAGGAGCCCAGCACAAGACATGCTG
GAGGGGACATCGGAGGTGCCAATGTGGAGCAGTGCTGGGAGAGCCTGGCTCTTCTCATTCTCCTTTTCCCAAGGAACATGGACAGGAAGCACAAAGGGACCCAGGCTGTTCCTTTAATTGTGTCCTTT
AGACATTGTGCAGAAGGCATGACGGGAGTCTAAATGACAGAAGACTTGGCTCACATACGTGTGTTATAGATTAAAGAACTCAAATTATCTGGTGCAGGAAATTCATTATATGAACTTTGGAGAGTGGA
AGGACTCGTTGGGTTACTATGTGTGCATTTGGATTTTTTACTTTTGATAACTTCACATGTTTATCCTCTTAGTTCCATTCCTACTTTAGCGGAGATGCAGCAGAAGCTTTTTAACCCTGGTACACTGG
CGGCTGAGTTCTAAGGAAAGCATAGTAGCACCAGGGTTTTATAACCAAAGCTTTCTCATGACATATTCACAAAGGAACTTAAACCTGCTGGAGTTTTTATGGCTTGAGAGTAACCAGATAGGAAGATC
ATTTAAGACATAGGACAGTCTCTGTTTAGAGGAAGGGTGATTTCTTAGATCCACTTTATGCCAATTCTATGGAAATATTTGAATTATCTCCTAGAAGGAGTCTTTAAATGCTAACTATTCACATTACA
GTTGATGCGAGCCTAACAGGGACCCTTCTGTACCCACTTGTCAGCTTTCTTACTTCTTTAAATGCTTAGTAAAACCTCAGTCATCTCCCCTCCTATTTTGGTGATTTCATAGATTACTGCCATGCAGA
AACATAAGAAACAGAGAAACTGGCCCAGGTTTGAAATGAGACGTTATTCATGTACTCGAATCTGTAATGTGGGATTGATTGTATGTATTAAGAAATGTTGACAGTATACTTGCTACACCGACTGTCTG
TCCTTTCGAAATTACAAGGAAAGATCGGTTCTATTATGTTGTCTACAGTGCTGTCAATTATTTGATTTTATTCTCACAGAAGAAGTGGAAATGGGTGCTACCTATTTATTGCTTAGACTTTGACTTAA
ATTTGACTGACTGGGTGCCTAACCAGAATAGTTATTCTCATGTGACTAAGTAAAATGTCACTCTGTTGATGGC

hide sequence

RefSeq Acc Id:

XM_017592898 ⟹ XP_017448387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	130,994,166 - 131,208,220 (-)	NCBI
mRatBN7.2	4	129,453,689 - 129,652,819 (-)	NCBI
Rnor_6.0	4	129,196,659 - 129,411,513 (-)	NCBI

Sequence:

show sequence

GCCTTTAAAACTGTGGATGGCCTGAAGTCACGAAACTGACAGTATTGATGTAAAACTCCCTTAGAATCTTAAGAAACCGAGGCTTTGTGCACCATTAAGTGTTTTGGAACTTAGTGGATTTTTACATA
TGCTCATAGCCTGAATCCATGAAGTAGAAGTTTGAAGTTCCCCTATCCACATAGGTCCCTTGTTCCCCTCTTCTCCTCATACCCACTCCTCTCAGGTGACTTGACTAGCATTCTCTGAAGAGCTTTCT
TCTTTCTCTGAAGCTGGATTTAAATGGAAACTCAGAGTGTGTATTCTTCTCCAAGGTTTAGGATCAAGTCTGTTGCCTGGGGCAGGTCTTCATGATCACTGTGTGGGCTTCTACAGTATGAAGAGTTC
ACTCCAACCCACCCTGTGTTAAGTGTGGGAGGGCTGTTGTTCCTTCTAGGTTTGGCTGCTGTGCATAAAGAAAGCTTCTATGAACACTCTCATGCTTGTTTGGTCGATGTGAGCATGCGTTTCTGTAG
CATGGCTTTGCTTTTGAAGGTAATTGTGAGTCAGGTCTACAACTTGCCGGAAGTAATAAATGATAAAAAAAAGAGGACCACAGTAGCCATGGGCTTATTGTGTGTCAAGGATTGTTCCAGATCTTTCC
ATCTCTTCCCCTGTTCCATGGGGATGGGTGGGATTACTGTGCACACAGTGGGGGATGTGAGGTGAAGAAGCTTGCCAAGAGCATCTTTGAAACTTTGATCAGATTAGTAACAAGCAATTTCTCCAAGT
GATTGCCACGCCACAGGACCTCGTGCCAGGAAGAGGGTACGGGAGGAGCAATCAGGAGTGGAGACTGCACTCTGGCAGCTCTTACCCTTTCAGCTGGGGTTGGAACCCAGGCTGCGTGGCTTCGAAGG
CTCTGCTTTAACCTCTGGACTAAATGAATCTGCCTTTTGCAGACACCTCCAGCCCGTCGTATCCAGCAAGCCTGTCTCTGTCTCTCCAACGCTGAGGTTGTAGTTATGAACTGTCATCCCTTGCTTCC
CAGGTTGGCAGTGTTGCCTTCTCCGTTTCCGCTTCCGGTTTCCAGCGGCCATCTTTATTTGGCTGCCCTGCCCCACTAACAGGTGTAAAGGGTGCAGAAAACTGCCTATGGAGAGGCCTGCCTGGATT
GACAGGCTGGCTTCTGTCCCTGCAACTCTCGGCAGACAAGGAAGCTCCTTGGTCAGTCCTCATCCACAGGCAGAGATACCATCAGACAGGTCTTCCAAGCCCCAGTAGTTTTGTGGAGCTGCAGATAT
GGTTGGTCCCAGCTACAAAGGGACGTTCACGGTCACTCTCCAGGATCTTCTTGAGTAACAGTGTTTGACTGGAACCACGGACTGTGAACTCTCCAAGGGTTAAGAATTGAGAGTGCTACAACTTGGGT
TGGTAGGGCCTTAGAAGCCAGCCAATGGTGGGGGCATCTCCATGGAGCTGCTGTTACCTGGTCCTCAGAGTTCCAGGAGCAATTTTTCAAGGAAATAGATTCAAGGATGAGAGTCTGCACTAAGTGGG
TGCTGCTGTCTCACTGGCTGGTTCTGGCCTACATGTTAATGGTCTGCTGTAAGCTGATGTCCGCCTCGAGCCAGCACCTCCGGGGACATGCAGGTCACCATGTGATCAAGCAAGGTACGTGTGAGGTG
GTCGCTGTGCACCGCTGCTGCAATAAGAACCGCATAGAGGAGCGCTCTCAGACGGTCAAGTGTTCCTGCTTCCCAGGTCAGGTGGCTGGCACAACTCGGGCACAGCCTTCTTGTGTTGAAGCTTCCAT
TGTGATTGAGAAGTGGTGGTGCCACATGGATCCTTGCTTGGAAGGAGAGGACTGTAAAGTGCTTCCGGACTCCTCTGGTTGGTCCTGTAGCAGTGGCAATAAAGTCAAAACCACAAAGGTGACCCGGT
AGCAGACACAGAAGTGTTTGACTCCGAGGGGCATCAGGATGCAGAGCTGTGCTGTGTGGATTACCAGACGAGTGAGAGCTCAACCTCGGAACTCCCTCAGGAGTTCGTAGCTGCAGTATGAGCATTGT
AGAAAGTGGCATTTACATGACTGTCCCTGGTTCTCTGCTCCGTGATCTCATCAAACTGAACTACTGCTGCAGGTGACCACTCAACTGACGTGCTACCTGGACCTCCAAAGGAGCCCAGCACAAGACAT
GCTGGAGGGGACATCGGAGGTGCCAATGTGGAGCAGTGCTGGGAGAGCCTGGCTCTTCTCATTCTCCTTTTCCCAAGGAACATGGACAGGAAGCACAAAGGGACCCAGGCTGTTCCTTTAATTGTGTC
CTTTAGACATTGTGCAGAAGGCATGACGGGAGTCTAAATGACAGAAGACTTGGCTCACATACGTGTGTTATAGATTAAAGAACTCAAATTATCTGGTGCAGGAAATTCATTATATGAACTTTGGAGAG
TGGAAGGACTCGTTGGGTTACTATGTGTGCATTTGGATTTTTTACTTTTGATAACTTCACATGTTTATCCTCTTAGTTCCATTCCTACTTTAGCGGAGATGCAGCAGAAGCTTTTTAACCCTGGTACA
CTGGCGGCTGAGTTCTAAGGAAAGCATAGTAGCACCAGGGTTTTATAACCAAAGCTTTCTCATGACATATTCACAAAGGAACTTAAACCTGCTGGAGTTTTTATGGCTTGAGAGTAACCAGATAGGAA
GATCATTTAAGACATAGGACAGTCTCTGTTTAGAGGAAGGGTGATTTCTTAGATCCACTTTATGCCAATTCTATGGAAATATTTGAATTATCTCCTAGAAGGAGTCTTTAAATGCTAACTATTCACAT
TACAGTTGATGCGAGCCTAACAGGGACCCTTCTGTACCCACTTGTCAGCTTTCTTACTTCTTTAAATGCTTAGTAAAACCTCAGTCATCTCCCCTCCTATTTTGGTGATTTCATAGATTACTGCCATG
CAGAAACATAAGAAACAGAGAAACTGGCCCAGGTTTGAAATGAGACGTTATTCATGTACTCGAATCTGTAATGTGGGATTGATTGTATGTATTAAGAAATGTTGACAGTATACTTGCTACACCGACTG
TCTGTCCTTTCGAAATTACAAGGAAAGATCGGTTCTATTATGTTGTCTACAGTGCTGTCAATTATTTGATTTTATTCTCACAGAAGAAGTGGAAATGGGTGCTACCTATTTATTGCTTAGACTTTGAC
TTAAATTTGACTGACTGGGTGCCTAACCAGAATAGTTATTCTCATGTGACTAAGTAAAATGTCACTCTGTTGATGGC

hide sequence

RefSeq Acc Id:

XM_039108378 ⟹ XP_038964306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	131,010,381 - 131,228,032 (-)	NCBI
mRatBN7.2	4	129,453,689 - 129,671,320 (-)	NCBI

RefSeq Acc Id:

XM_063286713 ⟹ XP_063142783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	130,994,166 - 131,228,011 (-)	NCBI

RefSeq Acc Id:

XM_063286714 ⟹ XP_063142784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	130,994,166 - 131,208,221 (-)	NCBI

RefSeq Acc Id:

XM_063286715 ⟹ XP_063142785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	130,994,166 - 131,228,011 (-)	NCBI


Protein RefSeqs	NP_001128172	(Get FASTA)	NCBI Sequence Viewer
	XP_017448386	(Get FASTA)	NCBI Sequence Viewer
	XP_017448387	(Get FASTA)	NCBI Sequence Viewer
	XP_038964306	(Get FASTA)	NCBI Sequence Viewer
	XP_063142783	(Get FASTA)	NCBI Sequence Viewer
	XP_063142784	(Get FASTA)	NCBI Sequence Viewer
	XP_063142785	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI60856	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061075
	ENSRNOP00000061075.1
	ENSRNOP00000077857.1

RefSeq Acc Id:	NP_001128172 ⟸ NM_001134700
- Peptide Label:	precursor
- UniProtKB:	B1H244 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRVCTKWVLLSHWLVLAYMLMVCCKLMSASSQHLRGHAGHHVIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIEKWWCHMDPCLEGEDCKVLPDSSGWSCSSGNKV KTTKVTR hide sequence

RefSeq Acc Id:	XP_017448386 ⟸ XM_017592897
- Peptide Label:	isoform X1
- Sequence:	show sequence MRVCTKWVLLSHWLVLAYMLMVCCKLMSASSQHLRGHAGHHVIKQGTCEVVAVHRCCNKNRIEE RSQTVKCSCFPGQVAGTTRAQPSCVEASIVIEKWWCHMDPCLEGEDCKVLPDSSGWSCSSGNKVKTTKVTR hide sequence

RefSeq Acc Id:	XP_017448387 ⟸ XM_017592898
- Peptide Label:	isoform X2
- UniProtKB:	B1H244 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRVCTKWVLLSHWLVLAYMLMVCCKLMSASSQHLRGHAGHHVIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIEKWWCHMDPCLEGEDCKVLPDSSGWSCSSGNKV KTTKVTR hide sequence

Ensembl Acc Id:

ENSRNOP00000061075 ⟸ ENSRNOT00000067881

RefSeq Acc Id:	XP_038964306 ⟸ XM_039108378
- Peptide Label:	isoform X1

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1H244-F1-model_v2	AlphaFold	B1H244	1-135	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-43609	BioCyc
Ensembl Genes	ENSRNOG00000005830	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067881	ENTREZGENE
	ENSRNOT00000067881.2	UniProtKB/TrEMBL
	ENSRNOT00000111225.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8364977	IMAGE-MGC_LOAD
InterPro	Chemokine-like_FAM19A2	UniProtKB/TrEMBL
	TAFA_chemokine-like	UniProtKB/TrEMBL
KEGG Report	rno:689043	UniProtKB/TrEMBL
MGC_CLONE	MGC:187609	IMAGE-MGC_LOAD
NCBI Gene	689043	ENTREZGENE
PANTHER	CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER	UniProtKB/TrEMBL
	CHEMOKINE-LIKE PROTEIN TAFA-4	UniProtKB/TrEMBL
Pfam	TAFA	UniProtKB/TrEMBL
PhenoGen	Tafa4	PhenoGen
RatGTEx	ENSRNOG00000005830	RatGTEx
UniProt	A0A8I5Y9S7_RAT	UniProtKB/TrEMBL
	B1H244	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-10	Tafa4	TAFA chemokine like family member 4	Fam19a4	family with sequence similarity 19 member A4, C-C motif chemokine like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-06-01	Fam19a4	family with sequence similarity 19 member A4, C-C motif chemokine like	Fam19a4	family with sequence similarity 19 (chemokine (C-C motif)-like), member A4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-15	Fam19a4	family with sequence similarity 19 (chemokine (C-C motif)-like), member A4	LOC689043	similar to TAFA4 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC689043	similar to TAFA4 protein	LOC687122	similar to TAFA4 protein	Data merged from RGD:1588964	1643240	APPROVED
2006-11-20	LOC689043	similar to TAFA4 protein			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687122	similar to TAFA4 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD