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Gene: Asb5 (ankyrin repeat and SOCS box-containing 5) Rattus norvegicus

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Symbol:

Asb5

Name:

ankyrin repeat and SOCS box-containing 5

RGD ID:

1565973

Description:

Predicted to be involved in positive regulation of protein catabolic process and protein ubiquitination. Predicted to be located in membrane. Orthologous to human ASB5 (ankyrin repeat and SOCS box containing 5); INTERACTS WITH 1,3-dinitrobenzene; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ankyrin repeat and SOCS box protein 5; hypothetical protein LOC361187; LOC361187; MGC114420; similar to ankyrin repeat and SOCs box-containing protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	43,970,940 - 44,038,318 (-)	NCBI		GRCr8
mRatBN7.2	16	37,237,869 - 37,305,207 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	37,235,405 - 37,278,109 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	42,589,415 - 42,628,946 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	45,950,226 - 45,989,759 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	41,331,215 - 41,370,715 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	39,985,233 - 40,050,663 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	39,985,234 - 40,025,401 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	39,760,399 - 39,826,806 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	16	35,364,045 - 35,403,104 (-)	NCBI		Celera
Cytogenetic Map	16	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Asb5	Rat	Neurodevelopmental Disorders		ISO	ASB5 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Asb5	Rat	1,2-dichloroethane	decreases expression	ISO	Asb5 (Mus musculus)	6480464	ethylene dichloride results in decreased expression of ASB5 mRNA	CTD	PMID:28960355
Asb5	Rat	1,3-dinitrobenzene	decreases expression	EXP		6480464	3-dinitrobenzene results in decreased expression of ASB5 mRNA	CTD	PMID:21983209
Asb5	Rat	1-naphthyl isothiocyanate	increases expression	EXP		6480464	1-Naphthylisothiocyanate results in increased expression of ASB5 mRNA	CTD	PMID:30723492
Asb5	Rat	17beta-estradiol	decreases expression	ISO	Asb5 (Mus musculus)	6480464	Estradiol results in decreased expression of ASB5 mRNA	CTD	PMID:19484750
Asb5	Rat	17beta-estradiol	decreases expression	EXP		6480464	Estradiol results in decreased expression of ASB5 mRNA	CTD	PMID:32145629
Asb5	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of ASB5 mRNA	CTD	PMID:32109520
Asb5	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of ASB5 mRNA	CTD	PMID:33387578
Asb5	Rat	2,3,7,8-Tetrachlorodibenzofuran	decreases expression	EXP		6480464	2 more ...	CTD	PMID:32109520
Asb5	Rat	4,4'-diaminodiphenylmethane	decreases expression	ISO	Asb5 (Mus musculus)	6480464	4 and 4'-diaminodiphenylmethane results in decreased expression of ASB5 mRNA	CTD	PMID:18648102
Asb5	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of ASB5 mRNA	CTD	PMID:24780913
Asb5	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of ASB5 mRNA	CTD	PMID:30047161
Asb5	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of ASB5 mRNA	CTD	PMID:28959563
Asb5	Rat	alpha-Zearalanol	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of ASB5 mRNA	CTD	PMID:35163327
Asb5	Rat	alpha-Zearalanol	decreases expression	EXP		6480464	Zeranol results in decreased expression of ASB5 mRNA	CTD	PMID:35163327
Asb5	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of ASB5 mRNA	CTD	PMID:30047161
Asb5	Rat	arsenous acid	decreases expression	ISO	ASB5 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of ASB5 mRNA	CTD	PMID:20458559
Asb5	Rat	benzo[a]pyrene	increases expression	ISO	ASB5 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of ASB5 mRNA	CTD	PMID:22316170
Asb5	Rat	benzo[a]pyrene	decreases methylation	ISO	ASB5 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of ASB5 promoter	CTD	PMID:27901495
Asb5	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ASB5 mRNA	CTD	PMID:25181051 and PMID:32145629
Asb5	Rat	bisphenol A	increases expression	ISO	Asb5 (Mus musculus)	6480464	bisphenol A results in increased expression of ASB5 mRNA	CTD	PMID:38074096
Asb5	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ASB5 mRNA	CTD	PMID:34947998
Asb5	Rat	cadmium dichloride	decreases methylation	EXP		6480464	Cadmium Chloride results in decreased methylation of ASB5 promoter	CTD	PMID:22457795
Asb5	Rat	CGP 52608	multiple interactions	ISO	ASB5 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to ASB5 gene]	CTD	PMID:28238834
Asb5	Rat	chlorpyrifos	decreases expression	ISO	Asb5 (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of ASB5 mRNA	CTD	PMID:37019170
Asb5	Rat	diarsenic trioxide	decreases expression	ISO	ASB5 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of ASB5 mRNA	CTD	PMID:20458559
Asb5	Rat	furan	decreases methylation	EXP		6480464	furan results in decreased methylation of ASB5 gene	CTD	PMID:22079235
Asb5	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of ASB5 mRNA	CTD	PMID:25539665
Asb5	Rat	indole-3-methanol	affects expression	EXP		6480464	indole-3-carbinol affects the expression of ASB5 mRNA	CTD	PMID:21396975
Asb5	Rat	indole-3-methanol	multiple interactions	EXP		6480464	[indole-3-carbinol co-treated with Diethylnitrosamine] results in increased expression of ASB5 mRNA	CTD	PMID:22129741
Asb5	Rat	manganese(II) chloride	decreases expression	EXP		6480464	manganese chloride results in decreased expression of ASB5 mRNA	CTD	PMID:28801915
Asb5	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of ASB5 mRNA	CTD	PMID:30047161
Asb5	Rat	methylisothiazolinone	increases expression	ISO	ASB5 (Homo sapiens)	6480464	2-methyl-4-isothiazolin-3-one results in increased expression of ASB5 mRNA	CTD	PMID:31629900
Asb5	Rat	N-methyl-4-phenylpyridinium	decreases expression	EXP		6480464	1-Methyl-4-phenylpyridinium results in decreased expression of ASB5 mRNA	CTD	PMID:28801915
Asb5	Rat	N-nitrosodiethylamine	multiple interactions	EXP		6480464	[indole-3-carbinol co-treated with Diethylnitrosamine] results in increased expression of ASB5 mRNA	CTD	PMID:22129741
Asb5	Rat	okadaic acid	increases expression	ISO	ASB5 (Homo sapiens)	6480464	Okadaic Acid results in increased expression of ASB5 mRNA	CTD	PMID:38832940
Asb5	Rat	p-toluidine	increases expression	EXP		6480464	4-toluidine results in increased expression of ASB5 mRNA	CTD	PMID:27638505
Asb5	Rat	perfluorooctanoic acid	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of ASB5 mRNA	CTD	PMID:35163327
Asb5	Rat	pioglitazone	multiple interactions	ISO	Asb5 (Mus musculus)	6480464	[N-nitroso-tris-chloroethylurea co-treated with pioglitazone] results in decreased expression of ASB5 mRNA	CTD	PMID:27935865
Asb5	Rat	sodium arsenite	decreases expression	ISO	Asb5 (Mus musculus)	6480464	sodium arsenite results in decreased expression of ASB5 mRNA	CTD	PMID:37682722
Asb5	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of ASB5 mRNA	CTD	PMID:30047161
Asb5	Rat	T-2 toxin	increases expression	EXP		6480464	T-2 Toxin results in increased expression of ASB5 mRNA	CTD	PMID:26141394
Asb5	Rat	thapsigargin	decreases expression	ISO	Asb5 (Mus musculus)	6480464	Thapsigargin results in decreased expression of ASB5 protein	CTD	PMID:24648495
Asb5	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of ASB5 mRNA	CTD	PMID:23411599
Asb5	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of ASB5 mRNA	CTD	PMID:34492290
Asb5	Rat	triazines	multiple interactions	ISO	Asb5 (Mus musculus)	6480464	Triazines inhibits the reaction [IDH2 protein mutant form results in decreased expression of ASB5 mRNA]	CTD	PMID:27469509
Asb5	Rat	triphenyl phosphate	increases expression	EXP		6480464	triphenyl phosphate results in increased expression of ASB5 mRNA	CTD	PMID:30589522
Asb5	Rat	valproic acid	decreases methylation	ISO	ASB5 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of ASB5 gene	CTD	PMID:29154799
Asb5	Rat	valproic acid	affects expression	ISO	Asb5 (Mus musculus)	6480464	Valproic Acid affects the expression of ASB5 mRNA	CTD	PMID:17292431
Asb5	Rat	valproic acid	increases expression	ISO	ASB5 (Homo sapiens)	6480464	Valproic Acid results in increased expression of ASB5 mRNA	CTD	PMID:23179753

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Asb5	Rat	intracellular signal transduction	involved_in	IEA	InterPro:IPR036036	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Asb5	Rat	positive regulation of protein catabolic process	involved_in	IBA	PANTHER:PTN000651312 and UniProtKB:Q96DX5	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Asb5	Rat	protein ubiquitination	involved_in	IEA	UniPathway:UPA00143	1600115	GO_REF:0000041	UniProt	GO_REF:0000041
Asb5	Rat	protein ubiquitination	involved_in	IBA	PANTHER:PTN000651312 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Asb5	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Asb5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	43,970,940 - 44,038,318 (-)	NCBI		GRCr8
mRatBN7.2	16	37,237,869 - 37,305,207 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	37,235,405 - 37,278,109 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	42,589,415 - 42,628,946 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	45,950,226 - 45,989,759 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	41,331,215 - 41,370,715 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	39,985,233 - 40,050,663 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	39,985,234 - 40,025,401 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	39,760,399 - 39,826,806 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	16	35,364,045 - 35,403,104 (-)	NCBI		Celera
Cytogenetic Map	16	p11	NCBI

ASB5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	176,213,673 - 176,277,524 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	176,213,673 - 176,277,571 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	177,134,824 - 177,190,373 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	177,371,822 - 177,427,269 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	177,509,976 - 177,565,424	NCBI
Celera	4	174,462,813 - 174,518,217 (-)	NCBI		Celera
Cytogenetic Map	4	q34.2	NCBI
HuRef	4	172,885,504 - 172,941,331 (-)	NCBI		HuRef
CHM1_1	4	177,111,529 - 177,166,815 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	179,552,031 - 179,616,715 (-)	NCBI		T2T-CHM13v2.0

Asb5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	55,003,366 - 55,040,877 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	54,982,615 - 55,040,910 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	54,550,331 - 54,587,842 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	54,529,580 - 54,587,875 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	55,635,684 - 55,673,189 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	56,049,028 - 56,086,533 (+)	NCBI		MGSCv36	mm8
Celera	8	57,263,821 - 57,301,277 (+)	NCBI		Celera
Cytogenetic Map	8	B1.3	NCBI
cM Map	8	29.27	NCBI

Asb5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	31,498,275 - 31,537,662 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	31,498,343 - 31,537,605 (+)	NCBI	ChiLan1.0	ChiLan1.0

ASB5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	173,912,097 - 173,984,679 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	174,293,792 - 174,366,287 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	168,395,946 - 168,460,887 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	180,630,051 - 180,685,113 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	180,629,905 - 180,692,422 (-)	Ensembl	panpan1.1		panPan2

ASB5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	53,299,076 - 53,351,339 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	53,298,516 - 53,349,421 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	48,801,206 - 48,853,327 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	55,614,666 - 55,666,541 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	55,616,233 - 55,666,570 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	53,508,244 - 53,560,277 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	54,104,508 - 54,156,142 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	54,342,862 - 54,394,856 (+)	NCBI		UU_Cfam_GSD_1.0

Asb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	26,396,842 - 26,488,966 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936516	6,811,130 - 6,903,045 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936516	6,811,144 - 6,903,258 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ASB5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	38,710,179 - 38,790,460 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	38,710,183 - 38,766,769 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	44,412,392 - 44,472,241 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ASB5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	122,284,195 - 122,373,998 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	122,285,865 - 122,344,277 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	102,363,315 - 102,424,794 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Asb5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	7,242,382 - 7,311,303 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624769	7,244,995 - 7,317,038 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Asb5
198 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	73
Count of miRNA genes:	48
Interacting mature miRNAs:	65
Transcripts:	ENSRNOT00000066639
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	35288870	80288870	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	21735975	66735975	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	25152793	70152793	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	24325513	69325513	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	31951520	60148445	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

RH140219

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	37,238,461 - 37,239,930 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	39,985,821 - 39,987,289	NCBI	Rnor6.0
Rnor_5.0	16	39,760,987 - 39,762,455	UniSTS	Rnor5.0
Celera	16	35,364,633 - 35,366,101	UniSTS

RH141255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	37,238,427 - 37,239,885 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	39,985,787 - 39,987,244	NCBI	Rnor6.0
Rnor_5.0	16	39,760,953 - 39,762,410	UniSTS	Rnor5.0
Celera	16	35,364,599 - 35,366,056	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001044247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC098935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066639 ⟹ ENSRNOP00000061114

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	37,237,872 - 37,278,109 (-)	Ensembl
Rnor_6.0 Ensembl	16	39,985,234 - 40,025,401 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089665 ⟹ ENSRNOP00000074476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	37,235,405 - 37,250,858 (-)	Ensembl
Rnor_6.0 Ensembl	16	39,985,515 - 39,996,338 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103090 ⟹ ENSRNOP00000088645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	37,237,874 - 37,277,270 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116663 ⟹ ENSRNOP00000086492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	37,235,405 - 37,256,886 (-)	Ensembl

RefSeq Acc Id:

NM_001044247 ⟹ NP_001037712

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 44,010,437 (-)	NCBI
mRatBN7.2	16	37,237,874 - 37,277,373 (-)	NCBI
Rnor_6.0	16	39,985,233 - 40,025,401 (-)	NCBI
Rnor_5.0	16	39,760,399 - 39,826,806 (-)	NCBI
Celera	16	35,364,045 - 35,403,104 (-)	RGD

Sequence:

show sequence

CGGAACAGAGCCAGACACAGTTGATACTTGGCGGGACCTAACACCAGGGCAGATTCCTCTGCAGCAATGTCGGTGTTAGAAGAAAGCCGGCCATTTGCTCAACAGCTATCTAATGTCTATTTTACGAT
ACTCTCCCTTTTCTGTTTTAAACTTTTTGTGAAAATCAGCCTCGCCATCCTTAGTCATTTCTACATCGTGAAAGGCAACCGAAAGGAAGCTGCGAGGATAGCCGCTGAGTTTTATGGAGTAAGCCAAG
GACAAGGATCCTGGGCAGATCGATCACCACTGCATGAAGCTGCAAGTCAAGGTCGTCTTCTTGCTCTGAGGACATTATTATCACAAGGTTATAACGTAAATGCAGTAACTATAGACCATGTCACTCCA
CTCCATGAAGCCTGCCTGGGTGACCATGTGGCATGTGCAAGGACTCTCCTGGAAGCTGGAGCTAATGCAAACGCAATCACAATAGATGGCGTGACTCCCTTGTTCAACGCATGCTCACAAGGCAGTGC
AAGCTGTGCAGAGCTCCTTTTGGAGTATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACATGAGGCTGCCAGCAAAGGTCACCATGAATGTCTCAACGTTTTGATAGCCTGGGGCG
TAGACATTGACCAAGACATTCCTCACTTGGGGACTCCTCTTTATGTAGCTTGTGCTGATGTACACAAGGGCAAGTACTGGGACACTCCCTTGCATGCTGCTGCTCAACAGCCCAGTACCGAAATTGTG
AACTTATTGATAGAATTTGGAGCGGACATCAATGCCAAGAACACAGAACTTTTGCGGCCTGTCGACCTGGTGACATCTAACAGTGCTGTAGAAAGAATACTTCTTCAACATGAAGCTACTCCAAGCTC
TCTTTGCCAACTCTGCCGACTCTGCATCCGCAACTACATAGGAAGACAAAGGTTGCATCTTATCCCCCAGATGCAGTTACCAACATTGCTTCAGAATTTCTTACAGTATCGATAACACAGAAAATGGT
TTCACTTTCTTGAGGATTCAAAATTTTCTATTTCATTTTCTTTTTAAAATATAGAATGATAAGGGTGATGGTATGTATAAGTTCACCCAGGACAGCCATAAAATCTCAGTGGATTTTCATCTGAAGAA
TATTCATGGGTAGTGTTTATCAATTTTTATGGTCTTTGGATTATGTTTAAAATATCTATACCATCTTAGCATTCTTGGTGTATCTTCTTGATTTAAAGGAAAGATTAAAATTTATCCATTTTATGTTT
TTTTATTATAGTGTGGGAAACAAAATTGCATAGTTTTGCTAAACATTTAGTCGAATTATAAATTTCATCCTGTGTTACTTTTTGAATGATCTGTAGTCTCAAGTAATGGGTTAACTGTAATTTTAGCT
AGTTATTGATTACCTCTGTGTTTTTAATATTGACATAAAATTAGAGCAACTAATATGCTTTTTGAAATAAAGATGACTCATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001399413 ⟹ NP_001386342

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 44,010,437 (-)	NCBI
mRatBN7.2	16	37,237,874 - 37,277,373 (-)	NCBI

RefSeq Acc Id:

NM_001399414 ⟹ NP_001386343

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 44,010,437 (-)	NCBI
mRatBN7.2	16	37,237,874 - 37,277,373 (-)	NCBI

RefSeq Acc Id:

XM_008771248 ⟹ XP_008769470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 43,985,001 (-)	NCBI
mRatBN7.2	16	37,237,869 - 37,251,988 (-)	NCBI
Rnor_6.0	16	39,985,233 - 39,999,674 (-)	NCBI

Sequence:

show sequence

AAAATTGTATTTAAACACTAGGCTGCATTCTTTTCTAACACTCATTTTAATCCCATGAAAGAGGTGGAGATATTGAAGCATTTGCAGTTATAAAAACCTGACTCTCAGGTGCTAACGTCCAAAGGTCA
CATTGGTAGCTACATATGTACGCTTGATTTTAAAAGCACGACTATCTTATCTGATGTCCAAGATCAGAATAATAGTGTGGAAGCACCATTGATCTGTAGTGGTTAACTGGTATGGTTAAGATTATCTC
CCTCAAATTAAAACTTTTTCCTGAAAATGATCTTCAAATTCATTTCTCTTGATTTTGTGATATTTATAGCAAAAAAAAAACAAAAAACAAAAAATTGATCAGGTAAGACATTGAACATTTGGCTCATT
TCCTTAGGATAAACTGTAACAGATTTCGTCTTTTTTTTTTTTTCTTAGCTTTTCTATTTCTGTCCAACCCCGTAGGCACAGGCTGTCTTATGAGATACTCGATGACTCATAGTGAACAATAAGAAATT
AGAGTAAGTTGCATGTCCATGTAATTCAGTATATTATTCTGTAGCAATGGAGGGTTCAGCTAAATTTATGATAACATTATTATAAGGAATGTTTTACAGAGATGATAGTAATAGCAAGACGAGATCAG
TCTCACTTCTTGAAGACACTGGTTTTGACATGTCTTCGAGAATTTCTGTTAATCTGGTTGTTTGAAAGAACACATTATAGTTCATTCCATGTCTGGTGACTTATTTTTAATCTATAAAAGGATGTGGA
CTAACTGTTGTTGGGCCTGCACCTTACGTATATTTGGGGACTTCTTTAAATTTTCAAATTACAGACTTTTACATAGAATTCTTGTCAACTACAGTCCTAAAGTTAAGTTGCCTTGAATTCAGCAATGA
ATCTGTGCCCATTGCAAAGAACACAGTGGATTTAATGTGTCATAAGTAAGGCAGCTACAAAATGCCTCAAATTTCTCAACAAAATGAAAAAGTTATATAAAAAGTGCCACTGATTGTCACCTGCTTAT
AATTCCCTGTTTGAGGTAAGTGTGGTGCAATTTCTATTTGGGAAAATATTAGGGAAAAAAAAGCAGGCATTCCAAAACTCTCAAGTCCTCTACAACATTGCTAAGTTGGCTCTTAAGGGAGAACAGAT
GTCACGTCACTGATGGGGCCAAGATTCGGAACAGGAAAAGTCTAAATAATGCCATCTCACCATACCCAAGGACAGAAGTAAAAGTAAAATGCTTTCATTTCATGACAAGAGCCATGGTCTTAAGGATA
AAAATAAGCTAGGGTTACTATTTTTCAGAGAGAATACTCAGTGAGGGGGTGGCAAAACACTTTTGAAGTTAGATCAGATTTTCTAAGAAACAAGTCATCATATTACAAGGAGCTTTAAGGTCCTTAAA
ATGGCTGAACACAACCAGTAAACGACGAGTGAAGTTTTTTTTGGGGTGTGGGGGGGCTGCTAAAAAAAGATGAGTCAAATTTACCTCAGCAGTGGCTGGCTTGAAGTGCCGTGGGGAGATGGTGACTT
AGGATCCTGGGCAGATCGATCACCACTGCATGAAGCTGCAAGTCAAGGTCGTCTTCTTGCTCTGAGGACATTATTATCACAAGGTTATAACGTAAATGCAGTAACTATAGACCATGTCACTCCACTCC
ATGAAGCCTGCCTGGGTGACCATGTGGCATGTGCAAGGACTCTCCTGGAAGCTGGAGCTAATGCAAACGCAATCACAATAGATGGCGTGACTCCCTTGTTCAACGCATGCTCACAAGGCAGTGCAAGC
TGTGCAGAGCTCCTTTTGGAGTATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACATGAGGCTGCCAGCAAAGGTCACCATGAATGTCTCAACGTTTTGATAGCCTGGGGCGTAGA
CATTGACCAAGACATTCCTCACTTGGGGACTCCTCTTTATGTAGCTTGTATGTCACAACAGTTTCATTGCATCTGGAAGCTTCTTTATGCTGGTGCTGATGTACACAAGGGCAAGTACTGGGACACTC
CCTTGCATGCTGCTGCTCAACAGCCCAGTACCGAAATTGTGAACTTATTGATAGAATTTGGAGCGGACATCAATGCCAAGAACACAGAACTTTTGCGGCCTGTCGACCTGGTGACATCTAACAGTGCT
GTAGAAAGAATACTTCTTCAACATGAAGCTACTCCAAGCTCTCTTTGCCAACTCTGCCGACTCTGCATCCGCAACTACATAGGAAGACAAAGGTTGCATCTTATCCCCCAGATGCAGTTACCAACATT
GCTTCAGAATTTCTTACAGTATCGATAACACAGAAAATGGTTTCACTTTCTTGAGGATTCAAAATTTTCTATTTCATTTTCTTTTTAAAATATAGAATGATAAGGGTGATGGTATGTATAAGTTCACC
CAGGACAGCCATAAAATCTCAGTGGATTTTCATCTGAAGAATATTCATGGGTAGTGTTTATCAATTTTTATGGTCTTTGGATTATGTTTAAAATATCTATACCATCTTAGCATTCTTGGTGTATCTTC
TTGATTTAAAGGAAAGATTAAAATTTATCCATTTTATGTTTTTTTATTATAGTGTGGGAAACAAAATTGCATAGTTTTGCTAAACATTTAGTCGAATTATAAATTTCATCCTGTGTTACTTTTTGAAT
GATCTGTAGTCTCAAGTAATGGGTTAACTGTAATTTTAGCTAGTTATTGATTACCTCTGTGTTTTTAATATTGACATAAAATTAGAGCAACTAATATGCTTTTTGAAATAAAGATGACTCATGTA

hide sequence

RefSeq Acc Id:

XM_017600190 ⟹ XP_017455679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 44,038,289 (-)	NCBI
mRatBN7.2	16	37,237,869 - 37,305,207 (-)	NCBI
Rnor_6.0	16	39,985,233 - 40,050,635 (-)	NCBI

Sequence:

show sequence

AATCCGCCAATCAACAACGGGTACGAGGGTTGGGTTTTGCCAAGGGGGAACCACCTTCTCCACCGCTCACTGTTTCCGTGGCCTCTGGCTTGATGAGAGTGGTATTAGAGATTAGCAGAGACCAGCCA
GAGGTTCACGGTGGAGCACTGGAAGCGACGACCACTGAGCCTCCGCTGATTGGACTTTGCTCAGTTTCTCTAACATCGGAGTAAGGAATGAGAGGGTGAAGAAGAACAAAGCTGACTACAAAGCACTA
TGGAAAGGACCAGCTGTTCAAGAGCATCCCGGAACAGAGCCAGACACAGTTGATACTTGGCGGGACCTAACACCAGGGCAGATTCCTCTGCAGCAATGTCGGTGTTAGAAGAAAGCCGGCCATTTGCT
CAACAGCTATCTAATGTCTATTTTACGATACTCTCCCTTTTCTGTTTTAAACTTTTTGTGAAAATCAGCCTCGCCATCCTTAGTCATTTCTACATCGTGAAAGGCAACCGAAAGGAAGCTGCGAGGAT
AGCCGCTGAGTTTTATGGAGTAAGCCAAGGACAAGGATCCTGGGCAGATCGATCACCACTGCATGAAGCTGCAAGTCAAGGTCGTCTTCTTGCTCTGAGGACATTATTATCACAAGGTTATAACGTAA
ATGCAGTAACTATAGACCATGTCACTCCACTCCATGAAGCCTGCCTGGGTGACCATGTGGCATGTGCAAGGACTCTCCTGGAAGCTGGAGCTAATGCAAACGCAATCACAATAGATGGCGTGACTCCC
TTGTTCAACGCATGCTCACAAGGCAGTGCAAGCTGTGCAGAGCTCCTTTTGGAGTATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACATGAGGCTGCCAGCAAAGGTCACCATGA
ATGTCTCAACGTTTTGATAGCCTGGGGCGTAGACATTGACCAAGACATTCCTCACTTGGGGACTCCTCTTTATGTAGCTTGTATGTCACAACAGTTTCATTGCATCTGGAAGCTTCTTTATGCTGGTG
CTGATGTACACAAGGGCAAGTACTGGGACACTCCCTTGCATGCTGCTGCTCAACAGCCCAGTACCGAAATTGTGAACTTATTGATAGAATTTGGAGCGGACATCAATGCCAAGAACACAGAACTTTTG
CGGCCTGTCGACCTGGTGACATCTAACAGTGCTGTAGAAAGAATACTTCTTCAACATGAAGCTACTCCAAGCTCTCTTTGCCAACTCTGCCGACTCTGCATCCGCAACTACATAGGAAGACAAAGGTT
GCATCTTATCCCCCAGATGCAGTTACCAACATTGCTTCAGAATTTCTTACAGTATCGATAACACAGAAAATGGTTTCACTTTCTTGAGGATTCAAAATTTTCTATTTCATTTTCTTTTTAAAATATAG
AATGATAAGGGTGATGGTATGTATAAGTTCACCCAGGACAGCCATAAAATCTCAGTGGATTTTCATCTGAAGAATATTCATGGGTAGTGTTTATCAATTTTTATGGTCTTTGGATTATGTTTAAAATA
TCTATACCATCTTAGCATTCTTGGTGTATCTTCTTGATTTAAAGGAAAGATTAAAATTTATCCATTTTATGTTTTTTTATTATAGTGTGGGAAACAAAATTGCATAGTTTTGCTAAACATTTAGTCGA
ATTATAAATTTCATCCTGTGTTACTTTTTGAATGATCTGTAGTCTCAAGTAATGGGTTAACTGTAATTTTAGCTAGTTATTGATTACCTCTGTGTTTTTAATATTGACATAAAATTAGAGCAACTAAT
ATGCTTTTTGAAATAAAGATGACTCATGTA

hide sequence

RefSeq Acc Id:

XM_039094697 ⟹ XP_038950625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 43,982,070 (-)	NCBI
mRatBN7.2	16	37,237,869 - 37,248,998 (-)	NCBI

RefSeq Acc Id:

XM_039094698 ⟹ XP_038950626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 43,990,126 (-)	NCBI
mRatBN7.2	16	37,237,869 - 37,257,541 (-)	NCBI

RefSeq Acc Id:

XM_039094699 ⟹ XP_038950627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 43,983,267 (-)	NCBI
mRatBN7.2	16	37,237,869 - 37,250,203 (-)	NCBI

RefSeq Acc Id:

XM_039094701 ⟹ XP_038950629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 43,995,889 (-)	NCBI
mRatBN7.2	16	37,237,869 - 37,262,762 (-)	NCBI

RefSeq Acc Id:

XM_063275582 ⟹ XP_063131652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	43,970,940 - 44,038,318 (-)	NCBI


Protein RefSeqs	NP_001037712	(Get FASTA)	NCBI Sequence Viewer
	NP_001386342	(Get FASTA)	NCBI Sequence Viewer
	NP_001386343	(Get FASTA)	NCBI Sequence Viewer
	XP_008769470	(Get FASTA)	NCBI Sequence Viewer
	XP_017455679	(Get FASTA)	NCBI Sequence Viewer
	XP_038950625	(Get FASTA)	NCBI Sequence Viewer
	XP_038950626	(Get FASTA)	NCBI Sequence Viewer
	XP_038950627	(Get FASTA)	NCBI Sequence Viewer
	XP_038950629	(Get FASTA)	NCBI Sequence Viewer
	XP_063131652	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98935	(Get FASTA)	NCBI Sequence Viewer
	EDL78950	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061114
	ENSRNOP00000061114.3
	ENSRNOP00000074476
	ENSRNOP00000074476.2
	ENSRNOP00000086492
	ENSRNOP00000086492.1
	ENSRNOP00000088645
	ENSRNOP00000088645.1
	ENSRNOP00000103447

RefSeq Acc Id:	NP_001037712 ⟸ NM_001044247
- Peptide Label:	isoform 1
- UniProtKB:	Q4KLY9 (UniProtKB/TrEMBL), D4A0S9 (UniProtKB/TrEMBL), A0A8I6A894 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVLEESRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVSQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLEAGAN ANAITIDGVTPLFNACSQGSASCAELLLEYGAKAQLESCFPSPTHEAASKGHHECLNVLIAWGVDIDQDIPHLGTPLYVACADVHKGKYWDTPLHAAAQQPSTEIVNLLIEFGADINAKNTELLRPVD LVTSNSAVERILLQHEATPSSLCQLCRLCIRNYIGRQRLHLIPQMQLPTLLQNFLQYR hide sequence

RefSeq Acc Id:	XP_008769470 ⟸ XM_008771248
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K854 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQIYLSSGWLEVPWGDGDLGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHE ACLGDHVACARTLLEAGANANAITIDGVTPLFNACSQGSASCAELLLEYGAKAQLESCFPSPTHEAASKGHHECLNVLIAWGVDIDQDIPHLGTPLYVACMSQQFHCIWKLLYAGADVHKGKYWDTPL HAAAQQPSTEIVNLLIEFGADINAKNTELLRPVDLVTSNSAVERILLQHEATPSSLCQLCRLCIRNYIGRQRLHLIPQMQLPTLLQNFLQYR hide sequence

RefSeq Acc Id:	XP_017455679 ⟸ XM_017600190
- Peptide Label:	isoform X1
- UniProtKB:	A0A8J8XZ77 (UniProtKB/TrEMBL), A6JPH2 (UniProtKB/TrEMBL), A0A8I6A894 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVLEESRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVSQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLEAGAN ANAITIDGVTPLFNACSQGSASCAELLLEYGAKAQLESCFPSPTHEAASKGHHECLNVLIAWGVDIDQDIPHLGTPLYVACMSQQFHCIWKLLYAGADVHKGKYWDTPLHAAAQQPSTEIVNLLIEFG ADINAKNTELLRPVDLVTSNSAVERILLQHEATPSSLCQLCRLCIRNYIGRQRLHLIPQMQLPTLLQNFLQYR hide sequence

Ensembl Acc Id:

ENSRNOP00000074476 ⟸ ENSRNOT00000089665

Ensembl Acc Id:

ENSRNOP00000061114 ⟸ ENSRNOT00000066639

Protein Domains

SOCS box

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KLY9-F1-model_v2	AlphaFold	Q4KLY9	1-314	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700082

Promoter ID:

EPDNEW_R10606

Type:

single initiation site

Name:

Asb5_1

Description:

ankyrin repeat and SOCS box-containing 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	40,025,448 - 40,025,508	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-11470	BioCyc
Ensembl Genes	ENSRNOG00000042630	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066639	ENTREZGENE
	ENSRNOT00000066639.4	UniProtKB/TrEMBL
	ENSRNOT00000089665	ENTREZGENE
	ENSRNOT00000089665.2	UniProtKB/TrEMBL
	ENSRNOT00000103090	ENTREZGENE
	ENSRNOT00000103090.1	UniProtKB/TrEMBL
	ENSRNOT00000116663	ENTREZGENE
	ENSRNOT00000116663.1	UniProtKB/TrEMBL
	ENSRNOT00000162968	ENTREZGENE
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
	SOCS box	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7445963	IMAGE-MGC_LOAD
InterPro	Ankyrin-SOCS_box_domain	UniProtKB/TrEMBL
	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
	ASB5_SOCS	UniProtKB/TrEMBL
	SOCS_box_dom_like	UniProtKB/TrEMBL
	SOCS_C	UniProtKB/TrEMBL
KEGG Report	rno:361187	UniProtKB/TrEMBL
MGC_CLONE	MGC:114420	IMAGE-MGC_LOAD
NCBI Gene	361187	ENTREZGENE
PANTHER	ANKYRIN REPEAT AND SOCS BOX PROTEIN 5	UniProtKB/TrEMBL
	SOWAH (DROSOPHILA) HOMOLOG	UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/TrEMBL
	SOCS_box	UniProtKB/TrEMBL
PhenoGen	Asb5	PhenoGen
PRINTS	ANKYRIN	UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
	SOCS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000042630	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
	SOCS_box	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
	SSF158235	UniProtKB/TrEMBL
UniProt	A0A0G2K854	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A894	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GE39	ENTREZGENE, UniProtKB/TrEMBL
	A0A8J8XZ77	ENTREZGENE, UniProtKB/TrEMBL
	A6JPH2	ENTREZGENE, UniProtKB/TrEMBL
	D4A0S9	ENTREZGENE
	Q4KLY9	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	D4A0S9	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-20	Asb5	ankyrin repeat and SOCS box-containing 5	LOC361187	similar to ankyrin repeat and SOCs box-containing protein 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC361187	similar to ankyrin repeat and SOCs box-containing protein 5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar