Asb5 (ankyrin repeat and SOCS box containing 5) - Rat Genome Database

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Gene: Asb5 (ankyrin repeat and SOCS box containing 5) Ictidomys tridecemlineatus
Analyze
Symbol: Asb5
Name: ankyrin repeat and SOCS box containing 5
RGD ID: 12529328
Description: INVOLVED IN intracellular signal transduction (inferred); positive regulation of protein catabolic process (inferred); protein ubiquitination (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and SOCS box containing 5, transcript variant X1; ankyrin repeat and SOCS box containing 5, transcript variant X2; ankyrin repeat and SOCS box containing 5, transcript variant X3; ankyrin repeat and SOCS box protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494326,396,842 - 26,488,966 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365166,811,130 - 6,903,045 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365166,811,144 - 6,903,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Asb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494326,396,842 - 26,488,966 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365166,811,130 - 6,903,045 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365166,811,144 - 6,903,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384176,213,673 - 176,277,524 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4176,213,673 - 176,277,571 (-)EnsemblGRCh38hg38GRCh38
GRCh374177,134,824 - 177,190,373 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364177,371,822 - 177,427,269 (-)NCBINCBI36Build 36hg18NCBI36
Build 344177,509,976 - 177,565,424NCBI
Celera4174,462,813 - 174,518,217 (-)NCBICelera
Cytogenetic Map4q34.2NCBI
HuRef4172,885,504 - 172,941,331 (-)NCBIHuRef
CHM1_14177,111,529 - 177,166,815 (-)NCBICHM1_1
T2T-CHM13v2.04179,552,031 - 179,616,715 (-)NCBIT2T-CHM13v2.0
Asb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39855,003,366 - 55,040,877 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl854,982,615 - 55,040,910 (+)EnsemblGRCm39 Ensembl
GRCm38854,550,331 - 54,587,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl854,529,580 - 54,587,875 (+)EnsemblGRCm38mm10GRCm38
MGSCv37855,635,684 - 55,673,189 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36856,049,028 - 56,086,533 (+)NCBIMGSCv36mm8
Celera857,263,821 - 57,301,277 (+)NCBICelera
Cytogenetic Map8B1.3NCBI
cM Map829.27NCBI
Asb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81643,970,940 - 44,038,318 (-)NCBIGRCr8
mRatBN7.21637,237,869 - 37,305,207 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1637,235,405 - 37,278,109 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1642,589,415 - 42,628,946 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01645,950,226 - 45,989,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01641,331,215 - 41,370,715 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01639,985,233 - 40,050,663 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1639,985,234 - 40,025,401 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01639,760,399 - 39,826,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1635,364,045 - 35,403,104 (-)NCBICelera
Cytogenetic Map16p11NCBI
Asb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540331,498,275 - 31,537,662 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540331,498,343 - 31,537,605 (+)NCBIChiLan1.0ChiLan1.0
ASB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23173,912,097 - 173,984,679 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14174,293,792 - 174,366,287 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04168,395,946 - 168,460,887 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14180,630,051 - 180,685,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4180,629,905 - 180,692,422 (-)Ensemblpanpan1.1panPan2
ASB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11653,299,076 - 53,351,339 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1653,298,516 - 53,349,421 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1648,801,206 - 48,853,327 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01655,614,666 - 55,666,541 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1655,616,233 - 55,666,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11653,508,244 - 53,560,277 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01654,104,508 - 54,156,142 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01654,342,862 - 54,394,856 (+)NCBIUU_Cfam_GSD_1.0
ASB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1538,710,179 - 38,790,460 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11538,710,183 - 38,766,769 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21544,412,392 - 44,472,241 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17122,284,195 - 122,373,998 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7122,285,865 - 122,344,277 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037102,363,315 - 102,424,794 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247697,242,382 - 7,311,303 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247697,244,995 - 7,317,038 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000021719   ⟹   ENSSTOP00000018851
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365166,811,130 - 6,903,045 (-)Ensembl
RefSeq Acc Id: XM_005325533   ⟹   XP_005325590
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494326,396,842 - 26,488,966 (-)NCBI
SpeTri2.0NW_0049365166,811,405 - 6,903,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726518   ⟹   XP_021582193
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494326,396,842 - 26,418,343 (-)NCBI
SpeTri2.0NW_0049365166,811,144 - 6,832,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726519   ⟹   XP_021582194
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494326,396,842 - 26,410,630 (-)NCBI
SpeTri2.0NW_0049365166,811,144 - 6,824,857 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005325590 (Get FASTA)   NCBI Sequence Viewer  
  XP_021582193 (Get FASTA)   NCBI Sequence Viewer  
  XP_021582194 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018851.1
GenBank Protein KAG3294537 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294538 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294539 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005325590   ⟸   XM_005325533
- Peptide Label: isoform X1
- UniProtKB: I3N3A5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582193   ⟸   XM_021726518
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021582194   ⟸   XM_021726519
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSTOP00000018851   ⟸   ENSSTOT00000021719
Protein Domains
SOCS box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026375 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021719.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  SOCS box UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ASB5_SOCS UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
  SOCS_box-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Asb5 ENTREZGENE
PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 5 UniProtKB/TrEMBL
  SOWAH (DROSOPHILA) HOMOLOG UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP SSF158235 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt I3N3A5 ENTREZGENE, UniProtKB/TrEMBL