Wdr26 (WD repeat domain 26) - Rat Genome Database

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Gene: Wdr26 (WD repeat domain 26) Rattus norvegicus
Analyze
Symbol: Wdr26
Name: WD repeat domain 26
RGD ID: 1565589
Description: Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol; mitochondrion; and nucleoplasm. Predicted to be part of GID complex. Orthologous to human WDR26 (WD repeat domain 26); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498301; RGD1565589; similar to myocardial ischemic preconditioning upregulated protein 2; WD repeat-containing protein 26
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,462,017 - 95,503,826 (-)NCBIGRCr8
mRatBN7.21392,930,282 - 92,972,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,930,285 - 92,977,295 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,435,602 - 95,477,016 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,835,504 - 96,876,919 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01394,011,130 - 94,052,465 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,493,117 - 99,532,775 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,493,120 - 99,531,959 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,488,124 - 104,526,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,944,266 - 96,984,348 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1392,471,633 - 92,510,631 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr26RatDevelopmental Disease  ISOWDR26 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental disorderClinVarPMID:25741868
Wdr26Ratgastrointestinal stromal tumor  ISOWDR26 (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
Wdr26Ratgenetic disease  ISOWDR26 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
Wdr26Ratintellectual disability  ISOWDR26 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
Wdr26Ratlong QT syndrome  ISOWDR26 (Homo sapiens)8554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:26132555
Wdr26Ratparathyroid carcinoma  ISOWDR26 (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
Wdr26RatSkraban-Deardorff Syndrome  ISOWDR26 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr26RatSkraban-Deardorff Syndrome  ISOWDR26 (Homo sapiens)7240710 OMIM 

1 to 20 of 98 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr26Rat(1->4)-beta-D-glucan multiple interactionsISOWdr26 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of WDR26 mRNACTDPMID:36331819
Wdr26Rat1,2-dimethylhydrazine decreases expressionISOWdr26 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of WDR26 mRNACTDPMID:22206623
Wdr26Rat14-Deoxy-11,12-didehydroandrographolide increases expressionISOWDR26 (Homo sapiens)648046414-deoxy-11 and 12-didehydroandrographolide results in increased expression of WDR26 mRNACTDPMID:22101062
Wdr26Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOWdr26 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of WDR26 mRNACTDPMID:21570461
Wdr26Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of WDR26 mRNACTDPMID:33387578
Wdr26Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of WDR26 mRNACTDPMID:34747641
Wdr26Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOWDR26 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of WDR26 mRNACTDPMID:28628672
Wdr26Rat3-methylcholanthrene multiple interactionsISOWDR26 (Homo sapiens)6480464Methylcholanthrene promotes the reaction [AHR protein binds to WDR26 promoter]CTDPMID:20348232
Wdr26Rat4,4'-diaminodiphenylmethane decreases expressionEXP 64804644 and 4'-diaminodiphenylmethane results in decreased expression of WDR26 mRNACTDPMID:30723492
Wdr26Rat4,4'-sulfonyldiphenol decreases expressionISOWdr26 (Mus musculus)6480464bisphenol S results in decreased expression of WDR26 mRNACTDPMID:39298647
Wdr26Rat5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole affects expressionEXP 6480464Omeprazole affects the expression of WDR26 mRNACTDPMID:19483382
Wdr26Rat6-propyl-2-thiouracil affects expressionEXP 6480464Propylthiouracil affects the expression of WDR26 mRNACTDPMID:19483382
Wdr26Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of WDR26 mRNACTDPMID:30047161
Wdr26Ratallethrin multiple interactionsEXP 6480464[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in decreased expression of WDR26 proteinCTDPMID:34896426
Wdr26Ratamiodarone affects expressionEXP 6480464Amiodarone affects the expression of WDR26 mRNACTDPMID:19483382
Wdr26Ratamitrole increases expressionEXP 6480464Amitrole results in increased expression of WDR26 mRNACTDPMID:30047161
Wdr26RatAroclor 1254 decreases expressionISOWdr26 (Mus musculus)6480464Chlorodiphenyl (54% Chlorine) results in decreased expression of WDR26 mRNACTDPMID:23650126
Wdr26Ratarsane affects expressionISOWDR26 (Homo sapiens)6480464Arsenic affects the expression of WDR26 mRNACTDPMID:18414638
Wdr26Ratarsane affects methylationISOWDR26 (Homo sapiens)6480464Arsenic affects the methylation of WDR26 geneCTDPMID:25304211
Wdr26Ratarsenic atom affects expressionISOWDR26 (Homo sapiens)6480464Arsenic affects the expression of WDR26 mRNACTDPMID:18414638

1 to 20 of 98 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr26Ratproteasome-mediated ubiquitin-dependent protein catabolic process involved_inIBAPANTHER:PTN000519953 and SGD:S0000005441600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr26Ratcytoplasm located_inISOWDR26 (Homo sapiens)1624291 PMID:15378603RGDPMID:15378603
Wdr26Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Wdr26Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Wdr26Ratcytosol located_inISOWDR26 (Homo sapiens) and UniProtKB:Q9H7D7-11624291 RGDGO_REF:0000052
Wdr26Ratcytosol located_inIEAUniProtKB:A0A499FIZ0 and ensembl:ENSP000004081081600115GO_REF:0000107EnsemblGO_REF:0000107
Wdr26RatGID complex part_ofIBAFB:FBgn0037094 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Wdr26Ratmitochondrion located_inISOWDR26 (Homo sapiens) and UniProtKB:Q9H7D7-11624291 RGDGO_REF:0000052
Wdr26Ratmitochondrion located_inIEAUniProtKB:A0A499FIZ0 and ensembl:ENSP000004081081600115GO_REF:0000107EnsemblGO_REF:0000107
Wdr26Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Wdr26Ratmitochondrion located_inIEAUniProtKB-SubCell:SL-01731600115GO_REF:0000044UniProtGO_REF:0000044
Wdr26Ratnucleoplasm located_inIEAUniProtKB:A0A499FIZ0 and ensembl:ENSP000004081081600115GO_REF:0000107EnsemblGO_REF:0000107
Wdr26Ratnucleoplasm located_inISOWDR26 (Homo sapiens) and UniProtKB:Q9H7D7-11624291 RGDGO_REF:0000052
Wdr26Ratnucleus located_inISOWDR26 (Homo sapiens)1624291 PMID:29911972RGDPMID:29911972
Wdr26Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Wdr26Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Wdr26Ratubiquitin ligase complex part_ofISOWDR26 (Homo sapiens)1624291 PMID:29911972RGDPMID:29911972
1 to 16 of 16 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr26Ratprotein binding enablesISOWDR26 (Homo sapiens)1624291UniProtKB:O15169 more ...RGDPMID:17510365 more ...


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:15378603   PMID:23625927   PMID:27797717   PMID:29253592   PMID:29911972   PMID:34981336  



Wdr26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,462,017 - 95,503,826 (-)NCBIGRCr8
mRatBN7.21392,930,282 - 92,972,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,930,285 - 92,977,295 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,435,602 - 95,477,016 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,835,504 - 96,876,919 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01394,011,130 - 94,052,465 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,493,117 - 99,532,775 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,493,120 - 99,531,959 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,488,124 - 104,526,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,944,266 - 96,984,348 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1392,471,633 - 92,510,631 (-)NCBICelera
Cytogenetic Map13q26NCBI
WDR26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,385,146 - 224,434,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,385,146 - 224,437,033 (-)EnsemblGRCh38hg38GRCh38
GRCh371224,572,848 - 224,622,499 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361222,639,815 - 222,688,335 (-)NCBINCBI36Build 36hg18NCBI36
Build 341220,879,927 - 220,928,447NCBI
Celera1197,763,775 - 197,812,936 (-)NCBICelera
Cytogenetic Map1q42.11-q42.12NCBI
HuRef1195,092,877 - 195,142,018 (-)NCBIHuRef
CHM1_11225,845,217 - 225,894,316 (-)NCBICHM1_1
T2T-CHM13v2.01223,573,956 - 223,623,646 (-)NCBIT2T-CHM13v2.0
Wdr26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391181,000,791 - 181,046,211 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1181,000,793 - 181,039,566 (-)EnsemblGRCm39 Ensembl
GRCm381181,173,226 - 181,220,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1181,173,228 - 181,212,001 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,103,357 - 183,142,109 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,014,368 - 183,048,045 (-)NCBIMGSCv36mm8
Celera1188,240,133 - 188,279,705 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.53NCBI
Wdr26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955520950,502 - 986,929 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955520950,505 - 983,963 (+)NCBIChiLan1.0ChiLan1.0
WDR26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2125,093,026 - 25,142,497 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1125,043,748 - 25,093,175 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01199,853,860 - 199,903,474 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11204,861,784 - 204,911,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1204,861,784 - 204,914,538 (-)Ensemblpanpan1.1panPan2
WDR26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1739,968,183 - 40,003,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl739,967,576 - 39,997,853 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha739,447,756 - 39,487,509 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0739,800,017 - 39,839,819 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl739,799,505 - 39,837,473 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1739,641,020 - 39,680,775 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0739,648,499 - 39,688,230 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0739,917,284 - 39,957,066 (+)NCBIUU_Cfam_GSD_1.0
Wdr26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934453,273,000 - 53,317,076 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365261,434,653 - 1,474,314 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365261,429,972 - 1,474,296 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1012,713,769 - 12,756,549 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11012,713,528 - 12,756,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,136,567 - 15,179,565 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,339,056 - 5,393,173 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660555,522,246 - 5,571,153 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248356,005,173 - 6,041,915 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248356,000,566 - 6,041,917 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Wdr26
135 total Variants

Predicted Target Of
Summary Value
Count of predictions:571
Count of miRNA genes:276
Interacting mature miRNAs:373
Transcripts:ENSRNOT00000005059
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1366451204106807694Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat

1 to 10 of 14 rows
AU048745  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5q32UniSTS
Cytogenetic Map13q24UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16p14UniSTS
Cytogenetic Map13q26UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map1q54UniSTS
Cytogenetic Map1q36UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map8q31UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map13p13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map10q31UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map3p13UniSTS
RH130354  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,933,033 - 92,933,214 (+)MAPPERmRatBN7.2
Rnor_6.01399,495,869 - 99,496,049NCBIRnor6.0
Rnor_5.013104,490,873 - 104,491,053UniSTSRnor5.0
RGSC_v3.41396,947,015 - 96,947,195UniSTSRGSC3.4
Celera1392,474,382 - 92,474,562UniSTS
RH 3.4 Map13631.8UniSTS
Cytogenetic Map13q26UniSTS
RH130922  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,932,144 - 92,932,364 (+)MAPPERmRatBN7.2
Rnor_6.01399,494,980 - 99,495,199NCBIRnor6.0
Rnor_5.013104,489,984 - 104,490,203UniSTSRnor5.0
RGSC_v3.41396,946,126 - 96,946,345UniSTSRGSC3.4
Celera1392,473,493 - 92,473,712UniSTS
RH 3.4 Map13658.1UniSTS
Cytogenetic Map13q26UniSTS
RH140570  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,934,037 - 92,934,257 (+)MAPPERmRatBN7.2
Rnor_6.01399,496,873 - 99,497,092NCBIRnor6.0
Rnor_5.013104,491,877 - 104,492,096UniSTSRnor5.0
RGSC_v3.41396,948,019 - 96,948,238UniSTSRGSC3.4
Celera1392,475,386 - 92,475,605UniSTS
RH 3.4 Map14158.87UniSTS
Cytogenetic Map13q26UniSTS
AI179677  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,930,317 - 92,930,407 (+)MAPPERmRatBN7.2
Rnor_6.01399,493,153 - 99,493,242NCBIRnor6.0
Rnor_5.013104,488,157 - 104,488,246UniSTSRnor5.0
RGSC_v3.41396,944,299 - 96,944,388UniSTSRGSC3.4
Celera1392,471,666 - 92,471,755UniSTS
RH 3.4 Map13618.0UniSTS
Cytogenetic Map13q26UniSTS
BE104590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,936,903 - 92,937,101 (+)MAPPERmRatBN7.2
Rnor_6.01399,499,740 - 99,499,937NCBIRnor6.0
Rnor_5.013104,494,744 - 104,494,941UniSTSRnor5.0
RGSC_v3.41396,950,886 - 96,951,083UniSTSRGSC3.4
Celera1392,478,253 - 92,478,450UniSTS
RH 3.4 Map13629.5UniSTS
Cytogenetic Map13q26UniSTS
AI103728  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,937,039 - 92,937,243 (+)MAPPERmRatBN7.2
Rnor_6.01399,499,876 - 99,500,079NCBIRnor6.0
Rnor_5.013104,494,880 - 104,495,083UniSTSRnor5.0
RGSC_v3.41396,951,022 - 96,951,225UniSTSRGSC3.4
Celera1392,478,389 - 92,478,592UniSTS
RH 3.4 Map13628.6UniSTS
Cytogenetic Map13q26UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000005059   ⟹   ENSRNOP00000005059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1392,930,285 - 92,977,295 (-)Ensembl
Rnor_6.0 Ensembl1399,493,120 - 99,531,959 (-)Ensembl
RefSeq Acc Id: NM_001109081   ⟹   NP_001102551
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,462,020 - 95,503,430 (-)NCBI
mRatBN7.21392,930,285 - 92,971,691 (-)NCBI
Rnor_6.01399,493,120 - 99,531,959 (-)NCBI
Rnor_5.013104,488,124 - 104,526,797 (-)NCBI
RGSC_v3.41396,944,266 - 96,984,348 (-)RGD
Celera1392,471,633 - 92,510,631 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401444   ⟹   NP_001388373
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,462,017 - 95,503,430 (-)NCBI
mRatBN7.21392,930,282 - 92,971,691 (-)NCBI
RefSeq Acc Id: XM_063272548   ⟹   XP_063128618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,466,985 - 95,503,792 (-)NCBI
RefSeq Acc Id: XR_005492274
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,462,017 - 95,503,792 (-)NCBI
mRatBN7.21392,934,125 - 92,971,691 (-)NCBI
RefSeq Acc Id: XR_005492275
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,462,017 - 95,503,826 (-)NCBI
mRatBN7.21392,934,125 - 92,972,061 (-)NCBI
Protein RefSeqs NP_001102551 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388373 (Get FASTA)   NCBI Sequence Viewer  
  NP_001422955 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128618 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL94853 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005059
  ENSRNOP00000101710
GenBank Protein F1LTR1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001102551   ⟸   NM_001109081
- Peptide Label: isoform 1
- UniProtKB: A0A8L2Q1C0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005059   ⟸   ENSRNOT00000005059
RefSeq Acc Id: NP_001388373   ⟸   NM_001401444
- Peptide Label: isoform 2
- UniProtKB: A0A8L2Q1C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128618   ⟸   XM_063272548
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q1C0 (UniProtKB/TrEMBL)
CTLH

Name Modeler Protein Id AA Range Protein Structure
AF-F1LTR1-F1-model_v2 AlphaFold F1LTR1 1-514 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-17095 BioCyc
Ensembl Genes ENSRNOG00000003723 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000005059 ENTREZGENE
  ENSRNOT00000134715 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
InterPro CTLH_C UniProtKB/Swiss-Prot
  G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
  WD_repeat-ST_regulator UniProtKB/Swiss-Prot
NCBI Gene 498301 ENTREZGENE
PANTHER WD REPEAT PROTEIN 26-RELATED UniProtKB/Swiss-Prot
  WD REPEAT-CONTAINING PROTEIN 26 UniProtKB/Swiss-Prot
Pfam WD40 UniProtKB/Swiss-Prot
PhenoGen Wdr26 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot
PROSITE CTLH UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003723 RatGTEx
SMART CTLH UniProtKB/Swiss-Prot
  WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A0A8L2Q1C0 ENTREZGENE, UniProtKB/TrEMBL
  A6JGJ7_RAT UniProtKB/TrEMBL
  F1LTR1 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Wdr26  WD repeat domain 26  RGD1565589_predicted  similar to myocardial ischemic preconditioning upregulated protein 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565589_predicted  similar to myocardial ischemic preconditioning upregulated protein 2 (predicted)  LOC498301  similar to myocardial ischemic preconditioning upregulated protein 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498301  similar to myocardial ischemic preconditioning upregulated protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL