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Gene: Gabpb2 (GA binding protein transcription factor subunit beta 2) Rattus norvegicus

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Symbol:

Gabpb2

Name:

GA binding protein transcription factor subunit beta 2

RGD ID:

1565234

Description:

Predicted to enable identical protein binding activity and transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human GABPB2 (GA binding protein transcription factor subunit beta 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GA binding protein transcription factor, beta subunit 2; GA repeat binding protein, beta 2; GA-binding protein subunit beta-2; LOC295263; RGD1565234; similar to transcription factor GABP beta 2-1 chain - mouse

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	185,444,309 - 185,484,200 (-)	NCBI		GRCr8
mRatBN7.2	2	182,755,304 - 182,795,368 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	182,761,359 - 182,795,109 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	196,357,030 - 196,392,514 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	196,359,243 - 196,377,883 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	215,853,498 - 215,889,078 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,094,254 - 190,114,114 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	175,293,630 - 175,329,110 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gabpb2	Rat	gastrointestinal stromal tumor		ISO	GABPB2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Gabpb2	Rat	immunodeficiency 42		ISO	GABPB2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency	ClinVar	PMID:28492532
Gabpb2	Rat	MHC class II deficiency		ISO	GABPB2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: MHC class II deficiency	ClinVar	PMID:28492532
Gabpb2	Rat	parathyroid carcinoma		ISO	GABPB2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
Gabpb2	Rat	severe congenital neutropenia 3		ISO	GABPB2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Kostmann syndrome	ClinVar	PMID:28492532
Gabpb2	Rat	severe congenital neutropenia 5		ISO	GABPB2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndrome	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gabpb2	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Gabpb2 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of GABPB2 mRNA	CTD	PMID:36331819
Gabpb2	Rat	17beta-estradiol	decreases expression	ISO	GABPB2 (Homo sapiens)	6480464	Estradiol results in decreased expression of GABPB2 mRNA	CTD	PMID:19167446
Gabpb2	Rat	17beta-estradiol	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	Estradiol results in increased expression of GABPB2 mRNA	CTD	PMID:20106945
Gabpb2	Rat	2,3',4,4',5-Pentachlorobiphenyl	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	2 more ...	CTD	PMID:31388691
Gabpb2	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Gabpb2 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of GABPB2 mRNA	CTD	PMID:19465110
Gabpb2	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of GABPB2 mRNA	CTD	PMID:33387578
Gabpb2	Rat	4,4'-diaminodiphenylmethane	increases expression	ISO	Gabpb2 (Mus musculus)	6480464	4 and 4'-diaminodiphenylmethane results in increased expression of GABPB2 mRNA	CTD	PMID:18648102
Gabpb2	Rat	4,4'-diaminodiphenylmethane	decreases expression	EXP		6480464	4 and 4'-diaminodiphenylmethane results in decreased expression of GABPB2 mRNA	CTD	PMID:30723492
Gabpb2	Rat	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of GABPB2 mRNA	CTD	PMID:28959563
Gabpb2	Rat	aflatoxin B1	increases expression	ISO	Gabpb2 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of GABPB2 mRNA	CTD	PMID:19770486
Gabpb2	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of GABPB2 mRNA	CTD	PMID:30779732
Gabpb2	Rat	arsane	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	Arsenic results in decreased expression of GABPB2 mRNA	CTD	PMID:19654921
Gabpb2	Rat	arsenic atom	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	Arsenic results in decreased expression of GABPB2 mRNA	CTD	PMID:19654921
Gabpb2	Rat	arsenous acid	decreases expression	ISO	GABPB2 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of GABPB2 mRNA	CTD	PMID:12852829
Gabpb2	Rat	benzene-1,2,4-triol	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	hydroxyhydroquinone results in increased expression of GABPB2 mRNA	CTD	PMID:17572062
Gabpb2	Rat	benzo[a]pyrene	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of GABPB2 mRNA	CTD	PMID:19770486
Gabpb2	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	GABPB2 (Homo sapiens)	6480464	7 more ...	CTD	PMID:19150397 and PMID:20382639
Gabpb2	Rat	benzo[e]pyrene	increases methylation	ISO	GABPB2 (Homo sapiens)	6480464	benzo(e)pyrene results in increased methylation of GABPB2 polyA tail	CTD	PMID:30157460
Gabpb2	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of GABPB2 mRNA	CTD	PMID:25181051
Gabpb2	Rat	bisphenol A	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	bisphenol A results in increased expression of GABPB2 mRNA	CTD	PMID:36232920
Gabpb2	Rat	bisphenol A	increases expression	ISO	Gabpb2 (Mus musculus)	6480464	bisphenol A results in increased expression of GABPB2 mRNA	CTD	PMID:33221593
Gabpb2	Rat	bisphenol A	affects methylation	ISO	Gabpb2 (Mus musculus)	6480464	bisphenol A affects the methylation of GABPB2 promoter	CTD	PMID:27334623
Gabpb2	Rat	CGP 52608	multiple interactions	ISO	GABPB2 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to GABPB2 gene]	CTD	PMID:28238834
Gabpb2	Rat	chloropicrin	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	chloropicrin results in increased expression of GABPB2 mRNA	CTD	PMID:26352163
Gabpb2	Rat	chlorpyrifos	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of GABPB2 mRNA	CTD	PMID:37019170
Gabpb2	Rat	choline	multiple interactions	ISO	Gabpb2 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of GABPB2 gene	CTD	PMID:20938992
Gabpb2	Rat	copper(II) sulfate	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of GABPB2 mRNA	CTD	PMID:19549813
Gabpb2	Rat	coumestrol	multiple interactions	ISO	GABPB2 (Homo sapiens)	6480464	[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in increased expression of GABPB2 mRNA	CTD	PMID:19167446
Gabpb2	Rat	coumestrol	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	Coumestrol results in increased expression of GABPB2 mRNA	CTD	PMID:19167446
Gabpb2	Rat	crocidolite asbestos	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	Asbestos and Crocidolite results in decreased expression of GABPB2 mRNA	CTD	PMID:29279043
Gabpb2	Rat	cyclosporin A	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	Cyclosporine results in increased expression of GABPB2 mRNA	CTD	PMID:20106945
Gabpb2	Rat	diarsenic trioxide	decreases expression	ISO	GABPB2 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of GABPB2 mRNA	CTD	PMID:12852829
Gabpb2	Rat	Dibutyl phosphate	affects expression	ISO	GABPB2 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of GABPB2 mRNA	CTD	PMID:37042841
Gabpb2	Rat	dibutyl phthalate	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	Dibutyl Phthalate results in decreased expression of GABPB2 mRNA	CTD	PMID:21266533
Gabpb2	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of GABPB2 mRNA	CTD	PMID:29391264
Gabpb2	Rat	Enterolactone	multiple interactions	ISO	GABPB2 (Homo sapiens)	6480464	[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in increased expression of GABPB2 mRNA	CTD	PMID:19167446
Gabpb2	Rat	folic acid	multiple interactions	ISO	Gabpb2 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of GABPB2 gene	CTD	PMID:20938992
Gabpb2	Rat	genistein	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	Genistein results in decreased expression of GABPB2 mRNA	CTD	PMID:32186404
Gabpb2	Rat	hydrogen peroxide	affects expression	ISO	GABPB2 (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of GABPB2 mRNA	CTD	PMID:20044591
Gabpb2	Rat	inulin	multiple interactions	ISO	Gabpb2 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of GABPB2 mRNA	CTD	PMID:36331819
Gabpb2	Rat	L-methionine	multiple interactions	ISO	Gabpb2 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of GABPB2 gene	CTD	PMID:20938992
Gabpb2	Rat	methapyrilene	increases methylation	ISO	GABPB2 (Homo sapiens)	6480464	Methapyrilene results in increased methylation of GABPB2 polyA tail	CTD	PMID:30157460
Gabpb2	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of GABPB2 mRNA	CTD	PMID:33387578
Gabpb2	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Gabpb2 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of GABPB2 mRNA and [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of GABPB2 mRNA	CTD	PMID:36331819
Gabpb2	Rat	phenobarbital	affects expression	ISO	Gabpb2 (Mus musculus)	6480464	Phenobarbital affects the expression of GABPB2 mRNA	CTD	PMID:23091169
Gabpb2	Rat	quercetin	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	Quercetin results in increased expression of GABPB2 mRNA	CTD	PMID:15309432
Gabpb2	Rat	sodium arsenite	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	sodium arsenite results in increased expression of GABPB2 mRNA	CTD	PMID:12760830
Gabpb2	Rat	sodium arsenite	increases expression	ISO	Gabpb2 (Mus musculus)	6480464	sodium arsenite results in increased expression of GABPB2 mRNA	CTD	PMID:32068019
Gabpb2	Rat	sulforaphane	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	sulforaphane results in increased expression of GABPB2 mRNA	CTD	PMID:31838189
Gabpb2	Rat	sunitinib	increases expression	ISO	GABPB2 (Homo sapiens)	6480464	Sunitinib results in increased expression of GABPB2 mRNA	CTD	PMID:31533062
Gabpb2	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of GABPB2 mRNA	CTD	PMID:34492290
Gabpb2	Rat	titanium dioxide	decreases methylation	ISO	Gabpb2 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of GABPB2 promoter	CTD	PMID:35295148
Gabpb2	Rat	triphenyl phosphate	affects expression	ISO	GABPB2 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of GABPB2 mRNA	CTD	PMID:37042841
Gabpb2	Rat	tungsten	decreases expression	ISO	Gabpb2 (Mus musculus)	6480464	Tungsten results in decreased expression of GABPB2 mRNA	CTD	PMID:30912803
Gabpb2	Rat	valproic acid	decreases expression	ISO	GABPB2 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of GABPB2 mRNA	CTD	PMID:28001369
Gabpb2	Rat	vitamin E	decreases expression	ISO	GABPB2 (Homo sapiens)	6480464	Vitamin E results in decreased expression of GABPB2 mRNA	CTD	PMID:19244175

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gabpb2	Rat	positive regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	GABPB2 (Homo sapiens)	1624291	PMID:9857059	RGD	PMID:9857059
Gabpb2	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IBA	PANTHER:PTN002793882 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gabpb2	Rat	nucleus	located_in	ISO	GABPB2 (Homo sapiens)	1624291	PMID:9857059	RGD	PMID:9857059
Gabpb2	Rat	nucleus	is_active_in	IBA	MGI:1925571 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gabpb2	Rat	identical protein binding	enables	ISO	Gabpb2 (Mus musculus)	1624291	PR:P81069 PMID:7958862	RGD	PMID:7958862
Gabpb2	Rat	protein binding	enables	ISO	GABPB2 (Homo sapiens)	1624291	UniProtKB:P08579 more ...	RGD	PMID:25416956 more ...
Gabpb2	Rat	transcription cis-regulatory region binding	enables	ISO	GABPB2 (Homo sapiens)	1624291	PMID:9857059	RGD	PMID:9857059
Gabpb2	Rat	transcription cis-regulatory region binding	enables	IBA	PANTHER:PTN002793882 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:7958862	PMID:9857059

Gabpb2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	185,444,309 - 185,484,200 (-)	NCBI		GRCr8
mRatBN7.2	2	182,755,304 - 182,795,368 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	182,761,359 - 182,795,109 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	196,357,030 - 196,392,514 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	196,359,243 - 196,377,883 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	215,853,498 - 215,889,078 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,094,254 - 190,114,114 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	175,293,630 - 175,329,110 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

GABPB2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	151,070,761 - 151,125,542 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	151,070,578 - 151,125,542 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	151,043,237 - 151,098,018 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	149,309,704 - 149,359,035 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	124,158,386 - 124,206,297 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	122,420,488 - 122,468,318 (+)	NCBI		HuRef
CHM1_1	1	152,438,397 - 152,486,334 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	150,194,444 - 150,249,243 (+)	NCBI		T2T-CHM13v2.0

Gabpb2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	95,089,077 - 95,125,291 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	95,089,077 - 95,125,227 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	95,181,766 - 95,218,110 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	95,181,766 - 95,217,916 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	94,985,688 - 95,021,864 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	95,272,854 - 95,303,113 (-)	NCBI		MGSCv36	mm8
Celera	3	96,612,834 - 96,648,906 (-)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	40.74	NCBI

Gabpb2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955588	459,211 - 480,421 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955588	439,822 - 477,159 (+)	NCBI	ChiLan1.0	ChiLan1.0

GABPB2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	98,702,857 - 98,763,214 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	98,457,943 - 98,519,176 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	126,419,892 - 126,479,691 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	130,067,320 - 130,114,493 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	130,084,854 - 130,114,493 (+)	Ensembl	panpan1.1		panPan2

GABPB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	60,154,346 - 60,183,839 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	60,155,407 - 60,183,716 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	59,598,376 - 59,628,412 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	61,170,600 - 61,200,915 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	61,171,664 - 61,199,790 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	59,999,681 - 60,029,664 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	60,084,540 - 60,115,033 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	60,812,090 - 60,842,467 (+)	NCBI		UU_Cfam_GSD_1.0

Gabpb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	22,253,286 - 22,292,733 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	1,290,991 - 1,321,925 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	1,283,593 - 1,323,110 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GABPB2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	98,133,647 - 98,163,778 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	98,129,864 - 98,163,955 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	107,385,549 - 107,417,371 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GABPB2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	12,558,951 - 12,623,941 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	12,143,828 - 12,206,635 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gabpb2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624772	18,726,903 - 18,760,307 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Gabpb2
181 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	96
Count of miRNA genes:	60
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000028661, ENSRNOT00000056396
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001433084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001055604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_227439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028661 ⟹ ENSRNOP00000028661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	182,761,359 - 182,795,109 (-)	Ensembl
Rnor_6.0 Ensembl	2	196,359,243 - 196,377,883 (-)	Ensembl

RefSeq Acc Id:

XM_006232936 ⟹ XP_006232998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,444,309 - 185,484,200 (-)	NCBI
mRatBN7.2	2	182,755,304 - 182,795,368 (-)	NCBI
Rnor_6.0	2	196,357,030 - 196,392,514 (-)	NCBI
Rnor_5.0	2	215,853,498 - 215,889,078 (-)	NCBI

Sequence:

show sequence

ATTTTTAAATTTTTACTTTATGTGCATTGCTGTTTTGTCTGAATGTAATGCTTGTGGGAGGGTGTCAGATTTTGGAGTTACACAGTTGTAAAGCTGTTCTGTGGGTGCTGGGAATTGAATCTGGGTCT
CCTGGAGTAGTCAGTGCTCTTAAACCCTGAACTATCTTTCCAGTGCCGTTTCTCCCTGGTTTCTCTCAGTTCTTTCACTGGTTAAAATGGTGACGAGAAACCAAGATATACTGGTAAATTTAGTGGCT
AAAAAGACTTGCAATTTTGTTCTATCCTCTTCTAGTCTCTCCAAAAGTTTTGGGTTTTTCTCTCTCTCCTGATAAATATTTAGGACACCAGGAAAGTGTCGGGTCAGACAGGAGTGTATAACCAGGAA
TGTCTCAAACAGCTTCATCGAGGCGGAAGCAAGATTCTCCCCCAACCCTAAAGTTAGCCCTGCGGAGAACAAGTGAGATGGTAGAGTGAGCGGCACCAGTAACCTAGTTTCCCCACAGCACGTGTTGG
CGCCAAAACTACCATCTCGGCCCGTCCCCTGCCGGAACTATGTCTCACGTAAGCCACGTAATCATTGATCCTGCGCCTCGCTAAGTAGTCCCGTTCAGGATGCCCTCGGTATACGCTTTTCCAGCTCA
AGAGGTTTTCAGTAAGAAGAAATCAGACTCAGAGCTACCTGGAAACTTCTGTCTCTATGCATAAAGATGTCTCTGGTGGACTTGGGGAAGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACGATGA
AGTGAGGACACTGATGGCAAATGGGGCTCCGTTTACCACAGACTGGCTTGGAACCTCACCACTTCACCTTGCAGCCCAGTATGGTCACTATTCCACAGCAGAAGTGCTCCTTCGAGCTGGCGTTAGCA
GGGATGCCCGGACCAAAGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGATGGACATGCTCACATTGTGGAACTACTTGTTAGGAGTGGCGCGGATGTGAACGCCAAAGACATGCTACAGATGACA
GCTCTGCACTGGGCCACGGAGCACCGCCACCGAGATGTTGTCGAGTTACTCATCAAATATGGGGCTGATGTCCATGCTTTCAGCAAATTTGACAAGTCTGCCTTTGACATAGCACTGGAGAAAAACAA
TACTGAGATTTTGGTCATGCTTCAGGAAGCAATGCAGAATCAGGTGAACACTAACCCCGAGAGAGCCAACCCGGTGGCTAACCCTGTGGCTGTGACTGCTCCGTTCATCTTCACCTCTGGAGAGGTCG
TTAACCTCGCTAGCTTTGTTTCTTCAGCCAACAACACCAAAGCAACCTCAGCTAATTTAGAAGAAATCGAAGAAGGAAATTCTCTTGACTCCTCAATCCAGCAAGTGGTGGGGAGTGGAGGCCAGAGG
GTCATCACCATAGTGACTGATGGAGTCCCTCTTGGTAACATCCAAACCGCAATCCCTACTGGAGGCATTGGCCAGCCGTTTATTGTAACTATGCAAGATGGGCAGCCAGTTCTAACTGTGCCTGCTGG
TCAGGTTGCAGAGGAAACGATAATTGAAGAGGAAGAAGAGGACGAGGAGAAGTTGCCTTTGGTGAAGAGACCGAGGATGGCAGAGATGACAAACAGTGTTGAGGAAATGAAGGAAGGCAGTGAAAGAG
AGCTACTGCAGCAACAGCTCCAGGAGGCCAACAGAAGAGCCCAGGAGTACAGACACCAGCTCCTCAAGAAGGAGCAGGAGGCAGAGCAGTACCGGCTCAGGCTGGAGGCTATGGCTCGGCAGCAGCCC
AACGGAGTGGATTTCACCGTGGTTGAGGAGGTGGCTGAAGTGGATGCTGTAGTGGTGACAGAAGGGGAAGAGGTAGAAAGAGCAACACACGCCATGAAGTCAGGAAGGACCACGGAGCCTCACACTAG
TGTTTCCATAGAAACTGTTTCCTCCTAACAGCCACAACTTGTGCTCGTCTTACTCTTTTTAAGAAGAAAGTACAGAGGCAAGTGTCGCATACAAATTCGAATGTCCTTAAGAAGGTAACAGTAGCCAG
GCTCAAGGCCTGAGCCTTGGAAGGCTGCATGTGCAGTTGGAAAACTCAGCCATTTTAGGAGTATCGGAGGGACCAAAGGACCAGGACCAAATCTCTCCGCTCATATCGTTGCTTTAAACAGAGTAATG
GGCATTGTGGGTTGATTTTTTTTTTTAATAGTTAGCTTTATATCAAAAGATTTTAACTCAATACTTGTAATACATATACACCAAGAGCCTTTAAAAATTTCAAGTGACCTGAAGATTTGCCTTAGATT
TATGAAGCTGACAAGGTTGTAGGAAACCTCCTCTTGAGGAAGAGTAAAGGCTATCATACATTTCTAAAGGAGCAGGCACACAAGTTCTTCCTAATTAATTTACTAAAATGAAATCTATAAGCCAGGCA
TGGCAGTACACACCTTCGATGTCAGCACTCAGGAAGCTGCGACAGAAAACTTTTTGACATCAGCCTGAGCTGAAGGGAGTCCTTCAGTAAAAGGGCCAGATGTTGTGGTGAGTGCCTTTAGTTCCAGC
ACTGGGGAAATAGACACGGGCGGATCTCTGTGAGTTCAAGGCCATGTGGTCTACATACCAAGTTCCAGGCCAGCCAAGGCTACATACATAGTGAGACCTGTGTCCTAAAAAGCAGAACAGGCCGGAGT
GGAGAAGTGGTGGGTTTGGAGCTTTGCTTGCTCTTCCAGAGAACCTTAGCTCCATCCCTAGCCCCCGGATCAAGCTGCTCACAAGTACATGGAACTCCAGCTCCCAGGGATCATGTTCTTTTTTGACA
TGTGTGGATAACCACACATATACATTTATATATACATATAAATAAAAATTTTAAAAATTAATAACAAAAAATAAGTTAAATGCAGTCGTTCACACTTTGGGAACCAGAAATAGGAAGATTGCCATGAA
TTTGAAGTCAGCCTGAGCTCCGTAGTGAGTTACAGGCCAGCCTGGGCTACTATGTGGGACCTTAATGCAAGGGAAAAACAAGTGTAGTGGTGTGCACCTCTCATTCCTCCGCTTGGGAGGCAGAGGCA
GGAGGATCTATGAGTTTGAGGCCAGCCTAGTCTACGAGAGAGTTCTGGTATAGCCAGGGCTACATACAGAGACACTTCTTAACAAAGAAGGTTTGATTTATGATTGCCCGATAAATTGTGTATCTGTA
GCTTAGATACCAGTATAAAAAGAAAAAACAAAATTAAGCTAGGCATAATGGTGGATCTTGTAATCCCTGCACTTGGGAGGGTGAGACAGAAAATCGCTATAACTTGTTAGAGGTAGCTTTGGCTTCAG
TAAGATCTTTCTCAAAAAGTAACAACAGAAACCCAGAAATGACCAGCTGTGGTGGCGATGGGCTCTCGTCCCTGCACTTGGGGAGCAGAGGCATGCAGGTCCTTGGGATTCTAACTAGCTTGGTCCAC
GTGGTCAGTTCCAAGCCAGCAGGGTTACCCAGACCCTAACAAGGAACAGAGAAAAAACAAAAACAAGCCCTGAGGAAGTAACTCAGAGGTAGAACATGCTGCTTAGCCTGCAAGAAGCCCTGGGTGCG
TCCTTTGGCACCGTACGATTACAAGGAGACAAGGCCAGGAGAGCAAAGGAAACCATTGACACCAAACCTAAAAACAGGAGAGAAGCTGTGTTGACATGGCAGTGTGTGCGAAGCCATGCCTTCCAGGC
TGTGTTTCCAGAGCACAGGAGGTGGCCAGACAGAGACTTCTGGGCTCCAAGTCTCTGCTCTAGAGATGGAAACTGGATATTGGCTGGACTTTATAAAACCACAAGCAGGAGGATCAGTTTTTTAAAAA
ATTTAAATTAATTTTTGTTTGTCATTGTAACAATATCTTGCTTCCAAACATCTATTTATATAAAATCAAGCTCAAAACTCTTTAAAGTGTATACAATTTGGCCAAATTTTCTATATCACATGGGACAC
TGGTGCTTTCTGTAGCACTTAGCATCCTGTCAAAAAGGAGTGTGGCAGACATAGGGACTGACCGGGCTGGGGAGGTTTGTCCCTGTTTGATTTTGTGTGAGTGCATTGCTGCTTCTCTCAGTGTGGCC
AGTAGAGTCTGTGCCCTAGAGTGCTCAGGTGACAAAGGGAGTGGGTGTCACTGCCACAGCCAGGAGCCAGCCACACACCCAGGCCCTTTGCTGACCTCCCTTCTCCCTTTGCTCTGTATATTCCCTCT
GCTCAGACACTTTTGCAAAGATTTTCAGTGCTGGGTATTTGAGAAAGGGTTGGGACGGGTCTCTCTAGCATGAAGTGGATGTATGTGTTTGTATAGCTGGACACTACTTACGCTTGTTAGCAGTCAGG
AACTACAG

hide sequence

RefSeq Acc Id:

XM_227439 ⟹ XP_227439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,444,309 - 185,484,200 (-)	NCBI
mRatBN7.2	2	182,755,304 - 182,794,675 (-)	NCBI
Rnor_6.0	2	196,357,030 - 196,391,834 (-)	NCBI
Rnor_5.0	2	215,853,498 - 215,889,078 (-)	NCBI
RGSC_v3.4	2	190,094,254 - 190,114,114 (-)	RGD

Sequence:

show sequence

TTGCGGTTCTGAGAGCAGGGCTAATTGGCTTTGCTAAGTCATTTCCTTCAGATTCCTCCGCCAG
GACGCATAGTCACAGCGCCTTCACTTCCGGGTCCGCCATTTTATTGCCTCCATTTCTCCGCGAGGGGGGGTAAGGGCCCCCCAAATATGCATATGTGAAAAGGCCAAAAAGTGAAGCCACTGGCAAGG
AATCTTAACTAGAGAAAGAAACGGGACCAAACTGGCGGGCCCAGTGAGAGCGAAGCCGGCAGCGCTCCGGACTAGCTACCTGGAAACTTCTGTCTCTATGCATAAAGATGTCTCTGGTGGACTTGGGG
AAGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACGATGAAGTGAGGACACTGATGGCAAATGGGGCTCCGTTTACCACAGACTGGCTTGGAACCTCACCACTTCACCTTGCAGCCCAGTATGGTCA
CTATTCCACAGCAGAAGTGCTCCTTCGAGCTGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGATGGACATGCTCACATTGTGGAACTACTTGTTAGGA
GTGGCGCGGATGTGAACGCCAAAGACATGCTACAGATGACAGCTCTGCACTGGGCCACGGAGCACCGCCACCGAGATGTTGTCGAGTTACTCATCAAATATGGGGCTGATGTCCATGCTTTCAGCAAA
TTTGACAAGTCTGCCTTTGACATAGCACTGGAGAAAAACAATACTGAGATTTTGGTCATGCTTCAGGAAGCAATGCAGAATCAGGTGAACACTAACCCCGAGAGAGCCAACCCGGTGGCTAACCCTGT
GGCTGTGACTGCTCCGTTCATCTTCACCTCTGGAGAGGTCGTTAACCTCGCTAGCTTTGTTTCTTCAGCCAACAACACCAAAGCAACCTCAGCTAATTTAGAAGAAATCGAAGAAGGAAATTCTCTTG
ACTCCTCAATCCAGCAAGTGGTGGGGAGTGGAGGCCAGAGGGTCATCACCATAGTGACTGATGGAGTCCCTCTTGGTAACATCCAAACCGCAATCCCTACTGGAGGCATTGGCCAGCCGTTTATTGTA
ACTATGCAAGATGGGCAGCCAGTTCTAACTGTGCCTGCTGGTCAGGTTGCAGAGGAAACGATAATTGAAGAGGAAGAAGAGGACGAGGAGAAGTTGCCTTTGGTGAAGAGACCGAGGATGGCAGAGAT
GACAAACAGTGTTGAGGAAATGAAGGAAGGCAGTGAAAGAGAGCTACTGCAGCAACAGCTCCAGGAGGCCAACAGAAGAGCCCAGGAGTACAGACACCAGCTCCTCAAGAAGGAGCAGGAGGCAGAGC
AGTACCGGCTCAGGCTGGAGGCTATGGCTCGGCAGCAGCCCAACGGAGTGGATTTCACCGTGGTTGAGGAGGTGGCTGAAGTGGATGCTGTAGTGGTGACAGAAGGGGAAGAGGTAGAAAGAGCAACA
CACGCCATGAAGTCAGGAAGGACCACGGAGCCTCACACTAGTGTTTCCATAGAAACTGTTTCCTCCTAACAGCCACAACTTGTGCTCGTCTTACTCTTTTTAAGAAGAAAGTACAGAGGCAAGTGTCG
CATACAAATTCGAATGTCCTTAAGAAGGTAACAGTAGCCAGGCTCAAGGCCTGAGCCTTGGAAGGCTGCATGTGCAGTTGGAAAACTCAGCCATTTTAGGAGTATCGGAGGGACCAAAGGACCAGGAC
CAAATCTCTCCGCTCATATCGTTGCTTTAAACAGAGTAATGGGCATTGTGGGTTGATTTTTTTTTTTAATAGTTAGCTTTATATCAAAAGATTTTAACTCAATACTTGTAATACATATACACCAAGAG
CCTTTAAAAATTTCAAGTGACCTGAAGATTTGCCTTAGATTTATGAAGCTGACAAGGTTGTAGGAAACCTCCTCTTGAGGAAGAGTAAAGGCTATCATACATTTCTAAAGGAGCAGGCACACAAGTTC
TTCCTAATTAATTTACTAAAATGAAATCTATAAGCCAGGCATGGCAGTACACACCTTCGATGTCAGCACTCAGGAAGCTGCGACAGAAAACTTTTTGACATCAGCCTGAGCTGAAGGGAGTCCTTCAG
TAAAAGGGCCAGATGTTGTGGTGAGTGCCTTTAGTTCCAGCACTGGGGAAATAGACACGGGCGGATCTCTGTGAGTTCAAGGCCATGTGGTCTACATACCAAGTTCCAGGCCAGCCAAGGCTACATAC
ATAGTGAGACCTGTGTCCTAAAAAGCAGAACAGGCCGGAGTGGAGAAGTGGTGGGTTTGGAGCTTTGCTTGCTCTTCCAGAGAACCTTAGCTCCATCCCTAGCCCCCGGATCAAGCTGCTCACAAGTA
CATGGAACTCCAGCTCCCAGGGATCATGTTCTTTTTTGACATGTGTGGATAACCACACATATACATTTATATATACATATAAATAAAAATTTTAAAAATTAATAACAAAAAATAAGTTAAATGCAGTC
GTTCACACTTTGGGAACCAGAAATAGGAAGATTGCCATGAATTTGAAGTCAGCCTGAGCTCCGTAGTGAGTTACAGGCCAGCCTGGGCTACTATGTGGGACCTTAATGCAAGGGAAAAACAAGTGTAG
TGGTGTGCACCTCTCATTCCTCCGCTTGGGAGGCAGAGGCAGGAGGATCTATGAGTTTGAGGCCAGCCTAGTCTACGAGAGAGTTCTGGTATAGCCAGGGCTACATACAGAGACACTTCTTAACAAAG
AAGGTTTGATTTATGATTGCCCGATAAATTGTGTATCTGTAGCTTAGATACCAGTATAAAAAGAAAAAACAAAATTAAGCTAGGCATAATGGTGGATCTTGTAATCCCTGCACTTGGGAGGGTGAGAC
AGAAAATCGCTATAACTTGTTAGAGGTAGCTTTGGCTTCAGTAAGATCTTTCTCAAAAAGTAACAACAGAAACCCAGAAATGACCAGCTGTGGTGGCGATGGGCTCTCGTCCCTGCACTTGGGGAGCA
GAGGCATGCAGGTCCTTGGGATTCTAACTAGCTTGGTCCACGTGGTCAGTTCCAAGCCAGCAGGGTTACCCAGACCCTAACAAGGAACAGAGAAAAAACAAAAACAAGCCCTGAGGAAGTAACTCAGA
GGTAGAACATGCTGCTTAGCCTGCAAGAAGCCCTGGGTGCGTCCTTTGGCACCGTACGATTACAAGGAGACAAGGCCAGGAGAGCAAAGGAAACCATTGACACCAAACCTAAAAACAGGAGAGAAGCT
GTGTTGACATGGCAGTGTGTGCGAAGCCATGCCTTCCAGGCTGTGTTTCCAGAGCACAGGAGGTGGCCAGACAGAGACTTCTGGGCTCCAAGTCTCTGCTCTAGAGATGGAAACTGGATATTGGCTGG
ACTTTATAAAACCACAAGCAGGAGGATCAGTTTTTTAAAAAATTTAAATTAATTTTTGTTTGTCATTGTAACAATATCTTGCTTCCAAACATCTATTTATATAAAATCAAGCTCAAAACTCTTTAAAG
TGTATACAATTTGGCCAAATTTTCTATATCACATGGGACACTGGTGCTTTCTGTAGCACTTAGCATCCTGTCAAAAAGGAGTGTGGCAGACATAGGGACTGACCGGGCTGGGGAGGTTTGTCCCTGTT
TGATTTTGTGTGAGTGCATTGCTGCTTCTCTCAGTGTGGCCAGTAGAGTCTGTGCCCTAGAGTGCTCAGGTGACAAAGGGAGTGGGTGTCACTGCCACAGCCAGGAGCCAGCCACACACCCAGGCCCT
TTGCTGACCTCCCTTCTCCCTTTGCTCTGTATATTCCCTCTGCTCAGACACTTTTGCAAAGATTTTCAGTGCTGGGTATTTGAGAAAGGGTTGGGACGGGTCTCTCTAGCATGAAGTGGATGTATGTG
TTTGTATAGCTGGACACTACTTACGCTTGTTAGCAGTCAGGAACTACAG

hide sequence

RefSeq Acc Id:

XR_005501120

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,451,458 - 185,484,200 (-)	NCBI
mRatBN7.2	2	182,762,450 - 182,795,368 (-)	NCBI


Protein RefSeqs	NP_001420013	(Get FASTA)	NCBI Sequence Viewer
	NP_001420014	(Get FASTA)	NCBI Sequence Viewer
	XP_006232998	(Get FASTA)	NCBI Sequence Viewer
	XP_227439	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL85731	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028661.5

RefSeq Acc Id:

XP_227439 ⟸ XM_227439

- Sequence:

show sequence

MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHAHIVELLVRSGADVNAKDMLQMTALHWATEHRHRDVVELLIKYGA
DVHAFSKFDKSAFDIALEKNNTEILVMLQEAMQNQVNTNPERANPVANPVAVTAPFIFTSGEVVNLASFVSSANNTKATSANLEEIEEGNSLDSSIQQVVGSGGQRVITIVTDGVPLGNIQTAIPTGG
IGQPFIVTMQDGQPVLTVPAGQVAEETIIEEEEEDEEKLPLVKRPRMAEMTNSVEEMKEGSERELLQQQLQEANRRAQEYRHQLLKKEQEAEQYRLRLEAMARQQPNGVDFTVVEEVAEVDAVVVTEG
EEVERATHAMKSGRTTEPHTSVSIETVSS

hide sequence

RefSeq Acc Id:

XP_006232998 ⟸ XM_006232936

- Sequence:

show sequence

MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSR
DARTKVDRTPLHMAAADGHAHIVELLVRSGADVNAKDMLQMTALHWATEHRHRDVVELLIKYGADVHAFSKFDKSAFDIALEKNNTEILVMLQEAMQNQVNTNPERANPVANPVAVTAPFIFTSGEVV
NLASFVSSANNTKATSANLEEIEEGNSLDSSIQQVVGSGGQRVITIVTDGVPLGNIQTAIPTGGIGQPFIVTMQDGQPVLTVPAGQVAEETIIEEEEEDEEKLPLVKRPRMAEMTNSVEEMKEGSERE
LLQQQLQEANRRAQEYRHQLLKKEQEAEQYRLRLEAMARQQPNGVDFTVVEEVAEVDAVVVTEGEEVERATHAMKSGRTTEPHTSVSIETVSS

hide sequence

Ensembl Acc Id:

ENSRNOP00000028661 ⟸ ENSRNOT00000028661

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZSD3-F1-model_v2	AlphaFold	D3ZSD3	1-413	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-52106	BioCyc
Ensembl Genes	ENSRNOG00000021105	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000028661.8	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	Ankyrin-SOCS_Box	UniProtKB/TrEMBL
	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
KEGG Report	rno:295263	UniProtKB/TrEMBL
NCBI Gene	295263	ENTREZGENE
PANTHER	ANKYRIN REPEAT PROTEIN	UniProtKB/TrEMBL
	GA-BINDING PROTEIN SUBUNIT BETA-2	UniProtKB/TrEMBL
Pfam	Ank	UniProtKB/TrEMBL
	Ank_2	UniProtKB/TrEMBL
PhenoGen	Gabpb2	PhenoGen
PRINTS	ANKYRIN	UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021105	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
UniProt	D3ZSD3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-25	Gabpb2	GA binding protein transcription factor subunit beta 2	Gabpb2	GA binding protein transcription factor, beta subunit 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-30	Gabpb2	GA binding protein transcription factor, beta subunit 2	Gabpb2	GA repeat binding protein, beta 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Gabpb2	GA repeat binding protein, beta 2	RGD1565234_predicted	similar to transcription factor GABP beta 2-1 chain - mouse (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565234_predicted	similar to transcription factor GABP beta 2-1 chain - mouse (predicted)	LOC295263	similar to transcription factor GABP beta 2-1 chain - mouse	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC295263	similar to transcription factor GABP beta 2-1 chain - mouse			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar