Symbol:
Gabpb2
Name:
GA binding protein transcription factor subunit beta 2
RGD ID:
1565234
Description:
Predicted to enable identical protein binding activity and transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human GABPB2 (GA binding protein transcription factor subunit beta 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; acrylamide.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
GA binding protein transcription factor, beta subunit 2; GA repeat binding protein, beta 2; GA-binding protein subunit beta-2; LOC295263; RGD1565234; similar to transcription factor GABP beta 2-1 chain - mouse
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
GABPB2 (GA binding protein transcription factor subunit beta 2)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Gabpb2 (GA repeat binding protein, beta 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Gabpb2 (GA binding protein transcription factor subunit beta 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
GABPB2 (GA binding protein transcription factor subunit beta 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
GABPB2 (GA binding protein transcription factor subunit beta 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Gabpb2 (GA binding protein transcription factor subunit beta 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
GABPB2 (GA binding protein transcription factor subunit beta 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
GABPB2 (GA binding protein transcription factor subunit beta 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Gabpb2 (GA binding protein transcription factor subunit beta 2)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Mus musculus (house mouse):
Gabpb2 (GA repeat binding protein, beta 2)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
GABPB2 (GA binding protein transcription factor subunit beta 2)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
gabpb2b (GA binding protein transcription factor subunit beta 2b)
Alliance
DIOPT (Ensembl Compara|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
gabpb2a (GA binding protein transcription factor subunit beta 2a)
Alliance
DIOPT (InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
Atac3
Alliance
DIOPT (Ensembl Compara|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
gabpb2
Alliance
DIOPT (Ensembl Compara|OrthoFinder|PANTHER|PhylomeDB)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 185,444,309 - 185,484,200 (-) NCBI GRCr8 mRatBN7.2 2 182,755,304 - 182,795,368 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 182,761,359 - 182,795,109 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 2 196,357,030 - 196,392,514 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 196,359,243 - 196,377,883 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 215,853,498 - 215,889,078 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 190,094,254 - 190,114,114 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 2 175,293,630 - 175,329,110 (-) NCBI Celera Cytogenetic Map 2 q34 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Gabpb2 Rat (1->4)-beta-D-glucan multiple interactions ISO Gabpb2 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of GABPB2 mRNA CTD PMID:36331819 Gabpb2 Rat 17beta-estradiol decreases expression ISO GABPB2 (Homo sapiens) 6480464 Estradiol results in decreased expression of GABPB2 mRNA CTD PMID:19167446 Gabpb2 Rat 17beta-estradiol increases expression ISO GABPB2 (Homo sapiens) 6480464 Estradiol results in increased expression of GABPB2 mRNA CTD PMID:20106945 Gabpb2 Rat 2,3',4,4',5-Pentachlorobiphenyl decreases expression ISO Gabpb2 (Mus musculus) 6480464 2 more ... CTD PMID:31388691 Gabpb2 Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression ISO Gabpb2 (Mus musculus) 6480464 Tetrachlorodibenzodioxin results in increased expression of GABPB2 mRNA CTD PMID:19465110 Gabpb2 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of GABPB2 mRNA CTD PMID:33387578 Gabpb2 Rat 4,4'-diaminodiphenylmethane increases expression ISO Gabpb2 (Mus musculus) 6480464 4 and 4'-diaminodiphenylmethane results in increased expression of GABPB2 mRNA CTD PMID:18648102 Gabpb2 Rat 4,4'-diaminodiphenylmethane decreases expression EXP 6480464 4 and 4'-diaminodiphenylmethane results in decreased expression of GABPB2 mRNA CTD PMID:30723492 Gabpb2 Rat acrylamide increases expression EXP 6480464 Acrylamide results in increased expression of GABPB2 mRNA CTD PMID:28959563 Gabpb2 Rat aflatoxin B1 increases expression ISO Gabpb2 (Mus musculus) 6480464 Aflatoxin B1 results in increased expression of GABPB2 mRNA CTD PMID:19770486 Gabpb2 Rat amphetamine decreases expression EXP 6480464 Amphetamine results in decreased expression of GABPB2 mRNA CTD PMID:30779732 Gabpb2 Rat arsane decreases expression ISO Gabpb2 (Mus musculus) 6480464 Arsenic results in decreased expression of GABPB2 mRNA CTD PMID:19654921 Gabpb2 Rat arsenic atom decreases expression ISO Gabpb2 (Mus musculus) 6480464 Arsenic results in decreased expression of GABPB2 mRNA CTD PMID:19654921 Gabpb2 Rat arsenous acid decreases expression ISO GABPB2 (Homo sapiens) 6480464 Arsenic Trioxide results in decreased expression of GABPB2 mRNA CTD PMID:12852829 Gabpb2 Rat benzene-1,2,4-triol increases expression ISO GABPB2 (Homo sapiens) 6480464 hydroxyhydroquinone results in increased expression of GABPB2 mRNA CTD PMID:17572062 Gabpb2 Rat benzo[a]pyrene decreases expression ISO Gabpb2 (Mus musculus) 6480464 Benzo(a)pyrene results in decreased expression of GABPB2 mRNA CTD PMID:19770486 Gabpb2 Rat benzo[a]pyrene diol epoxide I decreases expression ISO GABPB2 (Homo sapiens) 6480464 7 more ... CTD PMID:19150397 and PMID:20382639 Gabpb2 Rat benzo[e]pyrene increases methylation ISO GABPB2 (Homo sapiens) 6480464 benzo(e)pyrene results in increased methylation of GABPB2 polyA tail CTD PMID:30157460 Gabpb2 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of GABPB2 mRNA CTD PMID:25181051 Gabpb2 Rat bisphenol A increases expression ISO GABPB2 (Homo sapiens) 6480464 bisphenol A results in increased expression of GABPB2 mRNA CTD PMID:36232920 Gabpb2 Rat bisphenol A increases expression ISO Gabpb2 (Mus musculus) 6480464 bisphenol A results in increased expression of GABPB2 mRNA CTD PMID:33221593 Gabpb2 Rat bisphenol A affects methylation ISO Gabpb2 (Mus musculus) 6480464 bisphenol A affects the methylation of GABPB2 promoter CTD PMID:27334623 Gabpb2 Rat CGP 52608 multiple interactions ISO GABPB2 (Homo sapiens) 6480464 CGP 52608 promotes the reaction [RORA protein binds to GABPB2 gene] CTD PMID:28238834 Gabpb2 Rat chloropicrin increases expression ISO GABPB2 (Homo sapiens) 6480464 chloropicrin results in increased expression of GABPB2 mRNA CTD PMID:26352163 Gabpb2 Rat chlorpyrifos decreases expression ISO Gabpb2 (Mus musculus) 6480464 Chlorpyrifos results in decreased expression of GABPB2 mRNA CTD PMID:37019170 Gabpb2 Rat choline multiple interactions ISO Gabpb2 (Mus musculus) 6480464 [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of GABPB2 gene CTD PMID:20938992 Gabpb2 Rat copper(II) sulfate increases expression ISO GABPB2 (Homo sapiens) 6480464 Copper Sulfate results in increased expression of GABPB2 mRNA CTD PMID:19549813 Gabpb2 Rat coumestrol multiple interactions ISO GABPB2 (Homo sapiens) 6480464 [Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in increased expression of GABPB2 mRNA CTD PMID:19167446 Gabpb2 Rat coumestrol increases expression ISO GABPB2 (Homo sapiens) 6480464 Coumestrol results in increased expression of GABPB2 mRNA CTD PMID:19167446 Gabpb2 Rat crocidolite asbestos decreases expression ISO Gabpb2 (Mus musculus) 6480464 Asbestos and Crocidolite results in decreased expression of GABPB2 mRNA CTD PMID:29279043 Gabpb2 Rat cyclosporin A increases expression ISO GABPB2 (Homo sapiens) 6480464 Cyclosporine results in increased expression of GABPB2 mRNA CTD PMID:20106945 Gabpb2 Rat diarsenic trioxide decreases expression ISO GABPB2 (Homo sapiens) 6480464 Arsenic Trioxide results in decreased expression of GABPB2 mRNA CTD PMID:12852829 Gabpb2 Rat Dibutyl phosphate affects expression ISO GABPB2 (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of GABPB2 mRNA CTD PMID:37042841 Gabpb2 Rat dibutyl phthalate decreases expression ISO Gabpb2 (Mus musculus) 6480464 Dibutyl Phthalate results in decreased expression of GABPB2 mRNA CTD PMID:21266533 Gabpb2 Rat endosulfan increases expression EXP 6480464 Endosulfan results in increased expression of GABPB2 mRNA CTD PMID:29391264 Gabpb2 Rat Enterolactone multiple interactions ISO GABPB2 (Homo sapiens) 6480464 [Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in increased expression of GABPB2 mRNA CTD PMID:19167446 Gabpb2 Rat folic acid multiple interactions ISO Gabpb2 (Mus musculus) 6480464 [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of GABPB2 gene CTD PMID:20938992 Gabpb2 Rat genistein decreases expression ISO Gabpb2 (Mus musculus) 6480464 Genistein results in decreased expression of GABPB2 mRNA CTD PMID:32186404 Gabpb2 Rat hydrogen peroxide affects expression ISO GABPB2 (Homo sapiens) 6480464 Hydrogen Peroxide affects the expression of GABPB2 mRNA CTD PMID:20044591 Gabpb2 Rat inulin multiple interactions ISO Gabpb2 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of GABPB2 mRNA CTD PMID:36331819 Gabpb2 Rat L-methionine multiple interactions ISO Gabpb2 (Mus musculus) 6480464 [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of GABPB2 gene CTD PMID:20938992 Gabpb2 Rat methapyrilene increases methylation ISO GABPB2 (Homo sapiens) 6480464 Methapyrilene results in increased methylation of GABPB2 polyA tail CTD PMID:30157460 Gabpb2 Rat paracetamol decreases expression EXP 6480464 Acetaminophen results in decreased expression of GABPB2 mRNA CTD PMID:33387578 Gabpb2 Rat perfluorooctane-1-sulfonic acid multiple interactions ISO Gabpb2 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of GABPB2 mRNA and [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of GABPB2 mRNA CTD PMID:36331819 Gabpb2 Rat phenobarbital affects expression ISO Gabpb2 (Mus musculus) 6480464 Phenobarbital affects the expression of GABPB2 mRNA CTD PMID:23091169 Gabpb2 Rat quercetin increases expression ISO GABPB2 (Homo sapiens) 6480464 Quercetin results in increased expression of GABPB2 mRNA CTD PMID:15309432 Gabpb2 Rat sodium arsenite increases expression ISO GABPB2 (Homo sapiens) 6480464 sodium arsenite results in increased expression of GABPB2 mRNA CTD PMID:12760830 Gabpb2 Rat sodium arsenite increases expression ISO Gabpb2 (Mus musculus) 6480464 sodium arsenite results in increased expression of GABPB2 mRNA CTD PMID:32068019 Gabpb2 Rat sulforaphane increases expression ISO GABPB2 (Homo sapiens) 6480464 sulforaphane results in increased expression of GABPB2 mRNA CTD PMID:31838189 Gabpb2 Rat sunitinib increases expression ISO GABPB2 (Homo sapiens) 6480464 Sunitinib results in increased expression of GABPB2 mRNA CTD PMID:31533062 Gabpb2 Rat thioacetamide increases expression EXP 6480464 Thioacetamide results in increased expression of GABPB2 mRNA CTD PMID:34492290 Gabpb2 Rat titanium dioxide decreases methylation ISO Gabpb2 (Mus musculus) 6480464 titanium dioxide results in decreased methylation of GABPB2 promoter CTD PMID:35295148 Gabpb2 Rat triphenyl phosphate affects expression ISO GABPB2 (Homo sapiens) 6480464 triphenyl phosphate affects the expression of GABPB2 mRNA CTD PMID:37042841 Gabpb2 Rat tungsten decreases expression ISO Gabpb2 (Mus musculus) 6480464 Tungsten results in decreased expression of GABPB2 mRNA CTD PMID:30912803 Gabpb2 Rat valproic acid decreases expression ISO GABPB2 (Homo sapiens) 6480464 Valproic Acid results in decreased expression of GABPB2 mRNA CTD PMID:28001369 Gabpb2 Rat vitamin E decreases expression ISO GABPB2 (Homo sapiens) 6480464 Vitamin E results in decreased expression of GABPB2 mRNA CTD PMID:19244175
(1->4)-beta-D-glucan (ISO) 17beta-estradiol (ISO) 2,3',4,4',5-Pentachlorobiphenyl (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 4,4'-diaminodiphenylmethane (EXP,ISO) acrylamide (EXP) aflatoxin B1 (ISO) amphetamine (EXP) arsane (ISO) arsenic atom (ISO) arsenous acid (ISO) benzene-1,2,4-triol (ISO) benzo[a]pyrene (ISO) benzo[a]pyrene diol epoxide I (ISO) benzo[e]pyrene (ISO) bisphenol A (EXP,ISO) CGP 52608 (ISO) chloropicrin (ISO) chlorpyrifos (ISO) choline (ISO) copper(II) sulfate (ISO) coumestrol (ISO) crocidolite asbestos (ISO) cyclosporin A (ISO) diarsenic trioxide (ISO) Dibutyl phosphate (ISO) dibutyl phthalate (ISO) endosulfan (EXP) Enterolactone (ISO) folic acid (ISO) genistein (ISO) hydrogen peroxide (ISO) inulin (ISO) L-methionine (ISO) methapyrilene (ISO) paracetamol (EXP) perfluorooctane-1-sulfonic acid (ISO) phenobarbital (ISO) quercetin (ISO) sodium arsenite (ISO) sulforaphane (ISO) sunitinib (ISO) thioacetamide (EXP) titanium dioxide (ISO) triphenyl phosphate (ISO) tungsten (ISO) valproic acid (ISO) vitamin E (ISO)
Gabpb2 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 185,444,309 - 185,484,200 (-) NCBI GRCr8 mRatBN7.2 2 182,755,304 - 182,795,368 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 182,761,359 - 182,795,109 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 2 196,357,030 - 196,392,514 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 196,359,243 - 196,377,883 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 215,853,498 - 215,889,078 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 190,094,254 - 190,114,114 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 2 175,293,630 - 175,329,110 (-) NCBI Celera Cytogenetic Map 2 q34 NCBI
GABPB2 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 151,070,761 - 151,125,542 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 151,070,578 - 151,125,542 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 151,043,237 - 151,098,018 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 149,309,704 - 149,359,035 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 1 124,158,386 - 124,206,297 (+) NCBI Celera Cytogenetic Map 1 q21.3 NCBI HuRef 1 122,420,488 - 122,468,318 (+) NCBI HuRef CHM1_1 1 152,438,397 - 152,486,334 (+) NCBI CHM1_1 T2T-CHM13v2.0 1 150,194,444 - 150,249,243 (+) NCBI T2T-CHM13v2.0
Gabpb2 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 95,089,077 - 95,125,291 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 95,089,077 - 95,125,227 (-) Ensembl GRCm39 Ensembl GRCm38 3 95,181,766 - 95,218,110 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 95,181,766 - 95,217,916 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 3 94,985,688 - 95,021,864 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 3 95,272,854 - 95,303,113 (-) NCBI MGSCv36 mm8 Celera 3 96,612,834 - 96,648,906 (-) NCBI Celera Cytogenetic Map 3 F2.1 NCBI cM Map 3 40.74 NCBI
Gabpb2 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955588 459,211 - 480,421 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955588 439,822 - 477,159 (+) NCBI ChiLan1.0 ChiLan1.0
GABPB2 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 98,702,857 - 98,763,214 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 98,457,943 - 98,519,176 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 126,419,892 - 126,479,691 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 130,067,320 - 130,114,493 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 130,084,854 - 130,114,493 (+) Ensembl panpan1.1 panPan2
GABPB2 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 17 60,154,346 - 60,183,839 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 17 60,155,407 - 60,183,716 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 17 59,598,376 - 59,628,412 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 17 61,170,600 - 61,200,915 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 17 61,171,664 - 61,199,790 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 17 59,999,681 - 60,029,664 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 17 60,084,540 - 60,115,033 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 17 60,812,090 - 60,842,467 (+) NCBI UU_Cfam_GSD_1.0
Gabpb2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 22,253,286 - 22,292,733 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936580 1,290,991 - 1,321,925 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936580 1,283,593 - 1,323,110 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
GABPB2 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 98,133,647 - 98,163,778 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 98,129,864 - 98,163,955 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 107,385,549 - 107,417,371 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
GABPB2 (Chlorocebus sabaeus - green monkey)
Gabpb2 (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 96 Count of miRNA genes: 60 Interacting mature miRNAs: 63 Transcripts: ENSRNOT00000028661, ENSRNOT00000056396 Prediction methods: Microtar, Miranda, Rnahybrid Result types: miRGate_prediction
1578648 Bss11 Bone structure and strength QTL 11 4.7 femur morphology trait (VT:0000559) femoral neck cortical cross-sectional area (CMO:0001702) 2 114837527 211674221 Rat 1358356 Srcrt1 Stress Responsive Cort QTL1 3.66 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 2 161699179 222436696 Rat 1331734 Bp204 Blood pressure QTL 204 3.61192 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 168358098 223265385 Rat 1298074 Bp164 Blood pressure QTL 164 0.003 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 42804607 202447032 Rat 1354648 Bp239 Blood pressure QTL 239 0.001 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 66118463 226797303 Rat 1354649 Kidm17 Kidney mass QTL 17 2.9 kidney mass (VT:0002707) calculated kidney weight (CMO:0000160) 2 81754530 227146641 Rat 10755499 Bp389 Blood pressure QTL 389 2.61 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 2 18960362 228801039 Rat 1298076 Bp166 Blood pressure QTL 166 0.0009 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 136445150 202447032 Rat 152025245 Scl81 Serum cholesterol level QTL 81 3.49 blood cholesterol amount (VT:0000180) 2 122609194 206936711 Rat 70162 Bp63 Blood pressure QTL 63 5.64 arterial blood pressure trait (VT:2000000) blood pressure measurement (CMO:0000003) 2 169745596 214745596 Rat 1554319 Bmd2 Bone mineral density QTL 2 13.4 0.0001 lumbar vertebra area (VT:0010570) lumbar vertebra cross-sectional area (CMO:0001689) 2 114837675 212549332 Rat 12879836 Kidm61 Kidney mass QTL 61 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 2 152413072 185122374 Rat 1581569 Uae32 Urinary albumin excretion QTL 32 0.0001 urine protein amount (VT:0005160) urine albumin excretion rate (CMO:0000757) 2 78665619 219826953 Rat 10043136 Iddm54 Insulin dependent diabetes mellitus QTL 54 3.4 0.0001 blood glucose amount (VT:0000188) age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140) 2 143657411 190602963 Rat 12879837 Am2 Aortic mass QTL 2 0.001 aorta mass (VT:0002845) aorta weight to aorta length to body weight ratio (CMO:0002722) 2 152413072 185122374 Rat 12879838 Cm86 Cardiac mass QTL 86 0.002 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 2 152413072 185122374 Rat 1302793 Bw16 Body weight QTL 16 5 0.0001 body mass (VT:0001259) body weight (CMO:0000012) 2 157142209 202446871 Rat 61467 Bp14 Blood pressure QTL 14 2.2 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 43154682 202446871 Rat 12879839 Cm85 Cardiac mass QTL 85 0.001 heart mass (VT:0007028) heart wet weight to body weight ratio (CMO:0002408) 2 152413072 185122374 Rat 61469 Bp16 Blood pressure QTL 16 5.64 arterial blood pressure trait (VT:2000000) blood pressure measurement (CMO:0000003) 2 169745596 214745596 Rat 70175 BpQTLCluster3 Blood pressure QTL cluster 3 4.128 arterial blood pressure trait (VT:2000000) absolute change in systolic blood pressure (CMO:0000607) 2 135552573 202446871 Rat 1549833 Bp257 Blood pressure QTL 257 0.003 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 168354880 185122374 Rat 1358900 Bw48 Body weight QTL 48 4.88 body mass (VT:0001259) body weight (CMO:0000012) 2 157142078 211086598 Rat 1359030 Bp277 Blood pressure QTL 277 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 2 114837527 185876470 Rat 1331760 Bp206 Blood pressure QTL 206 3.62454 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 56043031 202447032 Rat 12879840 Bw179 Body weight QTL 179 0.005 body mass (VT:0001259) body weight (CMO:0000012) 2 152413072 185122374 Rat 1581502 Esta3 Estrogen-induced thymic atrophy QTL 3 thymus mass (VT:0004954) thymus wet weight (CMO:0000855) 2 136916935 189599348 Rat 9589044 Scfw1 Subcutaneous fat weight QTL 1 5.8 0.001 subcutaneous adipose mass (VT:1000472) abdominal subcutaneous fat pad weight (CMO:0002069) 2 182171407 227171407 Rat 8694435 Bw166 Body weight QTL 166 14.08 0.001 retroperitoneal fat pad mass (VT:0010430) retroperitoneal fat pad weight to body weight ratio (CMO:0000635) 2 182171407 227171407 Rat 1359032 Hrtrt18 Heart rate QTL 18 heart pumping trait (VT:2000009) heart rate (CMO:0000002) 2 157142078 192625452 Rat 2301966 Bp322 Blood pressure QTL 322 3.58 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 150540301 202447032 Rat 1298080 Bp163 Blood pressure QTL 163 0.02 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 66118275 202447032 Rat 8662832 Vetf7 Vascular elastic tissue fragility QTL 7 3.5 aorta elastin amount (VT:0003905) aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002) 2 81689826 221035911 Rat 1298085 Bp165 Blood pressure QTL 165 0.0006 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 42804607 202447032 Rat 8694194 Abfw1 Abdominal fat weight QTL 1 11.7 0.001 visceral adipose mass (VT:0010063) abdominal fat pad weight to body weight ratio (CMO:0000095) 2 182171407 227171407 Rat 1359022 Ppulsi1 Prepulse inhibition QTL 1 3.63 prepulse inhibition trait (VT:0003088) acoustic startle response measurement (CMO:0001519) 2 136916935 213594495 Rat 1641891 Alcrsp17 Alcohol response QTL 17 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 2 149559561 249053267 Rat 724534 Uae6 Urinary albumin excretion QTL 6 10 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 2 78665619 249053267 Rat 61374 Edpm2 Estrogen-dependent pituitary mass QTL 2 4.42 0.86 pituitary gland mass (VT:0010496) pituitary gland wet weight (CMO:0000853) 2 76539322 202447032 Rat 2300189 Bmd48 Bone mineral density QTL 48 5.8 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 2 179335906 224335906 Rat 8662843 Vetf9 Vascular elastic tissue fragility QTL 9 2.05 thoracic aorta molecular composition trait (VT:0010568) aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003) 2 157142078 226277316 Rat 631501 Bp101 Blood pressure QTL 101 2.4 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 150341684 202446871 Rat 2307174 Activ3 Activity QTL 3 4.83 0.000058 locomotor behavior trait (VT:0001392) number of entries into a discrete space in an experimental apparatus (CMO:0000960) 2 168594495 213594495 Rat 1331794 Bp202 Blood pressure QTL 202 3.66819 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 141194931 223265385 Rat 71113 Cari2 Carrageenan-induced inflammation QTL 2 2.7 0.009 hypodermis integrity trait (VT:0010550) inflammatory exudate volume (CMO:0001429) 2 141596551 202447032 Rat 1331805 Cm29 Cardiac mass QTL 29 3.50746 heart mass (VT:0007028) heart wet weight (CMO:0000069) 2 141194931 223265385 Rat 634308 Sach6 Saccharin preference QTL 6 4.9 taste sensitivity trait (VT:0001986) saccharin intake volume to total fluid intake volume ratio (CMO:0001601) 2 112456140 212696837 Rat 1598805 Memor8 Memory QTL 8 3 exploratory behavior trait (VT:0010471) average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) 2 150341585 189039377 Rat 1358917 Cm42 Cardiac mass QTL 42 2.82 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 2 25413423 203928301 Rat 724568 Uae13 Urinary albumin excretion QTL 13 4.4 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 2 143157029 210020885 Rat 1358913 Cm41 Cardiac mass QTL 41 2.73 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 2 25413423 203928301 Rat 1300165 Rf9 Renal function QTL 9 3.28 kidney glomerulus integrity trait (VT:0010546) index of glomerular damage (CMO:0001135) 2 133914684 202447032 Rat 61401 Niddm2 Non-insulin dependent diabetes mellitus QTL 2 4.54 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 2 144599348 189599348 Rat 631507 Bp105 Blood pressure QTL 105 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 112456140 212696837 Rat 1641925 Alcrsp2 Alcohol response QTL 2 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 2 149559561 221167075 Rat 1354609 Niddm62 Non-insulin dependent diabetes mellitus QTL 62 4.72 0.000006 insulin secretion trait (VT:0003564) plasma insulin level (CMO:0000342) 2 150540301 202447032 Rat 1598833 Bp295 Blood pressure QTL 295 3.5 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 147798556 192798556 Rat 61417 Cia10 Collagen induced arthritis QTL 10 3.4 joint integrity trait (VT:0010548) experimental arthritis severity measurement (CMO:0001459) 2 179946951 224946951 Rat 1354622 Kidm16 Kidney mass QTL 16 3 kidney mass (VT:0002707) left kidney wet weight (CMO:0000083) 2 81754530 222436696 Rat 631266 Bp132 Blood pressure QTL 132 0.0005 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 46123260 202447032 Rat 631522 Bp74 Blood pressure QTL 74 0.05 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 172710921 184114403 Rat 8694383 Bw158 Body weight QTL 158 7.69 0.001 body lean mass (VT:0010483) lean tissue morphological measurement (CMO:0002184) 2 182171407 227171407 Rat 7488927 Bp365 Blood pressure QTL 365 0.008 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 162765032 207765032 Rat 1598838 Bp290 Blood pressure QTL 290 1.9 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 166539266 211539266 Rat 7488925 Bp364 Blood pressure QTL 364 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 2 160564068 205564068 Rat 2306901 Bp337 Blood pressure QTL 337 0.01 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 2 164073756 227146641 Rat 1354605 Rf48 Renal function QTL 48 2.9 blood creatinine amount (VT:0005328) plasma creatinine level (CMO:0000537) 2 74786664 206665859 Rat 6903312 Bw112 Body weight QTL 112 3.2 0.0013 body mass (VT:0001259) body weight (CMO:0000012) 2 143657569 184114274 Rat 1354601 Slep1 Serum leptin concentration QTL 1 5.39 blood leptin amount (VT:0005667) serum leptin level (CMO:0000780) 2 43171017 184114403 Rat 2293084 Iddm26 Insulin dependent diabetes mellitus QTL 26 2.9 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 2 174930955 213594495 Rat
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
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Ensembl Acc Id:
ENSRNOT00000028661 ⟹ ENSRNOP00000028661
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 2 182,761,359 - 182,795,109 (-) Ensembl Rnor_6.0 Ensembl 2 196,359,243 - 196,377,883 (-) Ensembl
RefSeq Acc Id:
XM_006232936 ⟹ XP_006232998
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 2 185,444,309 - 185,484,200 (-) NCBI mRatBN7.2 2 182,755,304 - 182,795,368 (-) NCBI Rnor_6.0 2 196,357,030 - 196,392,514 (-) NCBI Rnor_5.0 2 215,853,498 - 215,889,078 (-) NCBI
Sequence:
ATTTTTAAATTTTTACTTTATGTGCATTGCTGTTTTGTCTGAATGTAATGCTTGTGGGAGGGTGTCAGATTTTGGAGTTACACAGTTGTAAAGCTGTTCTGTGGGTGCTGGGAATTGAATCTGGGTCT CCTGGAGTAGTCAGTGCTCTTAAACCCTGAACTATCTTTCCAGTGCCGTTTCTCCCTGGTTTCTCTCAGTTCTTTCACTGGTTAAAATGGTGACGAGAAACCAAGATATACTGGTAAATTTAGTGGCT AAAAAGACTTGCAATTTTGTTCTATCCTCTTCTAGTCTCTCCAAAAGTTTTGGGTTTTTCTCTCTCTCCTGATAAATATTTAGGACACCAGGAAAGTGTCGGGTCAGACAGGAGTGTATAACCAGGAA TGTCTCAAACAGCTTCATCGAGGCGGAAGCAAGATTCTCCCCCAACCCTAAAGTTAGCCCTGCGGAGAACAAGTGAGATGGTAGAGTGAGCGGCACCAGTAACCTAGTTTCCCCACAGCACGTGTTGG CGCCAAAACTACCATCTCGGCCCGTCCCCTGCCGGAACTATGTCTCACGTAAGCCACGTAATCATTGATCCTGCGCCTCGCTAAGTAGTCCCGTTCAGGATGCCCTCGGTATACGCTTTTCCAGCTCA AGAGGTTTTCAGTAAGAAGAAATCAGACTCAGAGCTACCTGGAAACTTCTGTCTCTATGCATAAAGATGTCTCTGGTGGACTTGGGGAAGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACGATGA AGTGAGGACACTGATGGCAAATGGGGCTCCGTTTACCACAGACTGGCTTGGAACCTCACCACTTCACCTTGCAGCCCAGTATGGTCACTATTCCACAGCAGAAGTGCTCCTTCGAGCTGGCGTTAGCA GGGATGCCCGGACCAAAGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGATGGACATGCTCACATTGTGGAACTACTTGTTAGGAGTGGCGCGGATGTGAACGCCAAAGACATGCTACAGATGACA GCTCTGCACTGGGCCACGGAGCACCGCCACCGAGATGTTGTCGAGTTACTCATCAAATATGGGGCTGATGTCCATGCTTTCAGCAAATTTGACAAGTCTGCCTTTGACATAGCACTGGAGAAAAACAA TACTGAGATTTTGGTCATGCTTCAGGAAGCAATGCAGAATCAGGTGAACACTAACCCCGAGAGAGCCAACCCGGTGGCTAACCCTGTGGCTGTGACTGCTCCGTTCATCTTCACCTCTGGAGAGGTCG TTAACCTCGCTAGCTTTGTTTCTTCAGCCAACAACACCAAAGCAACCTCAGCTAATTTAGAAGAAATCGAAGAAGGAAATTCTCTTGACTCCTCAATCCAGCAAGTGGTGGGGAGTGGAGGCCAGAGG GTCATCACCATAGTGACTGATGGAGTCCCTCTTGGTAACATCCAAACCGCAATCCCTACTGGAGGCATTGGCCAGCCGTTTATTGTAACTATGCAAGATGGGCAGCCAGTTCTAACTGTGCCTGCTGG TCAGGTTGCAGAGGAAACGATAATTGAAGAGGAAGAAGAGGACGAGGAGAAGTTGCCTTTGGTGAAGAGACCGAGGATGGCAGAGATGACAAACAGTGTTGAGGAAATGAAGGAAGGCAGTGAAAGAG AGCTACTGCAGCAACAGCTCCAGGAGGCCAACAGAAGAGCCCAGGAGTACAGACACCAGCTCCTCAAGAAGGAGCAGGAGGCAGAGCAGTACCGGCTCAGGCTGGAGGCTATGGCTCGGCAGCAGCCC AACGGAGTGGATTTCACCGTGGTTGAGGAGGTGGCTGAAGTGGATGCTGTAGTGGTGACAGAAGGGGAAGAGGTAGAAAGAGCAACACACGCCATGAAGTCAGGAAGGACCACGGAGCCTCACACTAG TGTTTCCATAGAAACTGTTTCCTCCTAACAGCCACAACTTGTGCTCGTCTTACTCTTTTTAAGAAGAAAGTACAGAGGCAAGTGTCGCATACAAATTCGAATGTCCTTAAGAAGGTAACAGTAGCCAG GCTCAAGGCCTGAGCCTTGGAAGGCTGCATGTGCAGTTGGAAAACTCAGCCATTTTAGGAGTATCGGAGGGACCAAAGGACCAGGACCAAATCTCTCCGCTCATATCGTTGCTTTAAACAGAGTAATG GGCATTGTGGGTTGATTTTTTTTTTTAATAGTTAGCTTTATATCAAAAGATTTTAACTCAATACTTGTAATACATATACACCAAGAGCCTTTAAAAATTTCAAGTGACCTGAAGATTTGCCTTAGATT TATGAAGCTGACAAGGTTGTAGGAAACCTCCTCTTGAGGAAGAGTAAAGGCTATCATACATTTCTAAAGGAGCAGGCACACAAGTTCTTCCTAATTAATTTACTAAAATGAAATCTATAAGCCAGGCA TGGCAGTACACACCTTCGATGTCAGCACTCAGGAAGCTGCGACAGAAAACTTTTTGACATCAGCCTGAGCTGAAGGGAGTCCTTCAGTAAAAGGGCCAGATGTTGTGGTGAGTGCCTTTAGTTCCAGC ACTGGGGAAATAGACACGGGCGGATCTCTGTGAGTTCAAGGCCATGTGGTCTACATACCAAGTTCCAGGCCAGCCAAGGCTACATACATAGTGAGACCTGTGTCCTAAAAAGCAGAACAGGCCGGAGT GGAGAAGTGGTGGGTTTGGAGCTTTGCTTGCTCTTCCAGAGAACCTTAGCTCCATCCCTAGCCCCCGGATCAAGCTGCTCACAAGTACATGGAACTCCAGCTCCCAGGGATCATGTTCTTTTTTGACA TGTGTGGATAACCACACATATACATTTATATATACATATAAATAAAAATTTTAAAAATTAATAACAAAAAATAAGTTAAATGCAGTCGTTCACACTTTGGGAACCAGAAATAGGAAGATTGCCATGAA TTTGAAGTCAGCCTGAGCTCCGTAGTGAGTTACAGGCCAGCCTGGGCTACTATGTGGGACCTTAATGCAAGGGAAAAACAAGTGTAGTGGTGTGCACCTCTCATTCCTCCGCTTGGGAGGCAGAGGCA GGAGGATCTATGAGTTTGAGGCCAGCCTAGTCTACGAGAGAGTTCTGGTATAGCCAGGGCTACATACAGAGACACTTCTTAACAAAGAAGGTTTGATTTATGATTGCCCGATAAATTGTGTATCTGTA GCTTAGATACCAGTATAAAAAGAAAAAACAAAATTAAGCTAGGCATAATGGTGGATCTTGTAATCCCTGCACTTGGGAGGGTGAGACAGAAAATCGCTATAACTTGTTAGAGGTAGCTTTGGCTTCAG TAAGATCTTTCTCAAAAAGTAACAACAGAAACCCAGAAATGACCAGCTGTGGTGGCGATGGGCTCTCGTCCCTGCACTTGGGGAGCAGAGGCATGCAGGTCCTTGGGATTCTAACTAGCTTGGTCCAC GTGGTCAGTTCCAAGCCAGCAGGGTTACCCAGACCCTAACAAGGAACAGAGAAAAAACAAAAACAAGCCCTGAGGAAGTAACTCAGAGGTAGAACATGCTGCTTAGCCTGCAAGAAGCCCTGGGTGCG TCCTTTGGCACCGTACGATTACAAGGAGACAAGGCCAGGAGAGCAAAGGAAACCATTGACACCAAACCTAAAAACAGGAGAGAAGCTGTGTTGACATGGCAGTGTGTGCGAAGCCATGCCTTCCAGGC TGTGTTTCCAGAGCACAGGAGGTGGCCAGACAGAGACTTCTGGGCTCCAAGTCTCTGCTCTAGAGATGGAAACTGGATATTGGCTGGACTTTATAAAACCACAAGCAGGAGGATCAGTTTTTTAAAAA ATTTAAATTAATTTTTGTTTGTCATTGTAACAATATCTTGCTTCCAAACATCTATTTATATAAAATCAAGCTCAAAACTCTTTAAAGTGTATACAATTTGGCCAAATTTTCTATATCACATGGGACAC TGGTGCTTTCTGTAGCACTTAGCATCCTGTCAAAAAGGAGTGTGGCAGACATAGGGACTGACCGGGCTGGGGAGGTTTGTCCCTGTTTGATTTTGTGTGAGTGCATTGCTGCTTCTCTCAGTGTGGCC AGTAGAGTCTGTGCCCTAGAGTGCTCAGGTGACAAAGGGAGTGGGTGTCACTGCCACAGCCAGGAGCCAGCCACACACCCAGGCCCTTTGCTGACCTCCCTTCTCCCTTTGCTCTGTATATTCCCTCT GCTCAGACACTTTTGCAAAGATTTTCAGTGCTGGGTATTTGAGAAAGGGTTGGGACGGGTCTCTCTAGCATGAAGTGGATGTATGTGTTTGTATAGCTGGACACTACTTACGCTTGTTAGCAGTCAGG AACTACAG
hide sequence
RefSeq Acc Id:
XM_227439 ⟹ XP_227439
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 2 185,444,309 - 185,484,200 (-) NCBI mRatBN7.2 2 182,755,304 - 182,794,675 (-) NCBI Rnor_6.0 2 196,357,030 - 196,391,834 (-) NCBI Rnor_5.0 2 215,853,498 - 215,889,078 (-) NCBI RGSC_v3.4 2 190,094,254 - 190,114,114 (-) RGD
Sequence:
TTGCGGTTCTGAGAGCAGGGCTAATTGGCTTTGCTAAGTCATTTCCTTCAGATTCCTCCGCCAG GACGCATAGTCACAGCGCCTTCACTTCCGGGTCCGCCATTTTATTGCCTCCATTTCTCCGCGAGGGGGGGTAAGGGCCCCCCAAATATGCATATGTGAAAAGGCCAAAAAGTGAAGCCACTGGCAAGG AATCTTAACTAGAGAAAGAAACGGGACCAAACTGGCGGGCCCAGTGAGAGCGAAGCCGGCAGCGCTCCGGACTAGCTACCTGGAAACTTCTGTCTCTATGCATAAAGATGTCTCTGGTGGACTTGGGG AAGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACGATGAAGTGAGGACACTGATGGCAAATGGGGCTCCGTTTACCACAGACTGGCTTGGAACCTCACCACTTCACCTTGCAGCCCAGTATGGTCA CTATTCCACAGCAGAAGTGCTCCTTCGAGCTGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGATGGACATGCTCACATTGTGGAACTACTTGTTAGGA GTGGCGCGGATGTGAACGCCAAAGACATGCTACAGATGACAGCTCTGCACTGGGCCACGGAGCACCGCCACCGAGATGTTGTCGAGTTACTCATCAAATATGGGGCTGATGTCCATGCTTTCAGCAAA TTTGACAAGTCTGCCTTTGACATAGCACTGGAGAAAAACAATACTGAGATTTTGGTCATGCTTCAGGAAGCAATGCAGAATCAGGTGAACACTAACCCCGAGAGAGCCAACCCGGTGGCTAACCCTGT GGCTGTGACTGCTCCGTTCATCTTCACCTCTGGAGAGGTCGTTAACCTCGCTAGCTTTGTTTCTTCAGCCAACAACACCAAAGCAACCTCAGCTAATTTAGAAGAAATCGAAGAAGGAAATTCTCTTG ACTCCTCAATCCAGCAAGTGGTGGGGAGTGGAGGCCAGAGGGTCATCACCATAGTGACTGATGGAGTCCCTCTTGGTAACATCCAAACCGCAATCCCTACTGGAGGCATTGGCCAGCCGTTTATTGTA ACTATGCAAGATGGGCAGCCAGTTCTAACTGTGCCTGCTGGTCAGGTTGCAGAGGAAACGATAATTGAAGAGGAAGAAGAGGACGAGGAGAAGTTGCCTTTGGTGAAGAGACCGAGGATGGCAGAGAT GACAAACAGTGTTGAGGAAATGAAGGAAGGCAGTGAAAGAGAGCTACTGCAGCAACAGCTCCAGGAGGCCAACAGAAGAGCCCAGGAGTACAGACACCAGCTCCTCAAGAAGGAGCAGGAGGCAGAGC AGTACCGGCTCAGGCTGGAGGCTATGGCTCGGCAGCAGCCCAACGGAGTGGATTTCACCGTGGTTGAGGAGGTGGCTGAAGTGGATGCTGTAGTGGTGACAGAAGGGGAAGAGGTAGAAAGAGCAACA CACGCCATGAAGTCAGGAAGGACCACGGAGCCTCACACTAGTGTTTCCATAGAAACTGTTTCCTCCTAACAGCCACAACTTGTGCTCGTCTTACTCTTTTTAAGAAGAAAGTACAGAGGCAAGTGTCG CATACAAATTCGAATGTCCTTAAGAAGGTAACAGTAGCCAGGCTCAAGGCCTGAGCCTTGGAAGGCTGCATGTGCAGTTGGAAAACTCAGCCATTTTAGGAGTATCGGAGGGACCAAAGGACCAGGAC CAAATCTCTCCGCTCATATCGTTGCTTTAAACAGAGTAATGGGCATTGTGGGTTGATTTTTTTTTTTAATAGTTAGCTTTATATCAAAAGATTTTAACTCAATACTTGTAATACATATACACCAAGAG CCTTTAAAAATTTCAAGTGACCTGAAGATTTGCCTTAGATTTATGAAGCTGACAAGGTTGTAGGAAACCTCCTCTTGAGGAAGAGTAAAGGCTATCATACATTTCTAAAGGAGCAGGCACACAAGTTC TTCCTAATTAATTTACTAAAATGAAATCTATAAGCCAGGCATGGCAGTACACACCTTCGATGTCAGCACTCAGGAAGCTGCGACAGAAAACTTTTTGACATCAGCCTGAGCTGAAGGGAGTCCTTCAG TAAAAGGGCCAGATGTTGTGGTGAGTGCCTTTAGTTCCAGCACTGGGGAAATAGACACGGGCGGATCTCTGTGAGTTCAAGGCCATGTGGTCTACATACCAAGTTCCAGGCCAGCCAAGGCTACATAC ATAGTGAGACCTGTGTCCTAAAAAGCAGAACAGGCCGGAGTGGAGAAGTGGTGGGTTTGGAGCTTTGCTTGCTCTTCCAGAGAACCTTAGCTCCATCCCTAGCCCCCGGATCAAGCTGCTCACAAGTA CATGGAACTCCAGCTCCCAGGGATCATGTTCTTTTTTGACATGTGTGGATAACCACACATATACATTTATATATACATATAAATAAAAATTTTAAAAATTAATAACAAAAAATAAGTTAAATGCAGTC GTTCACACTTTGGGAACCAGAAATAGGAAGATTGCCATGAATTTGAAGTCAGCCTGAGCTCCGTAGTGAGTTACAGGCCAGCCTGGGCTACTATGTGGGACCTTAATGCAAGGGAAAAACAAGTGTAG TGGTGTGCACCTCTCATTCCTCCGCTTGGGAGGCAGAGGCAGGAGGATCTATGAGTTTGAGGCCAGCCTAGTCTACGAGAGAGTTCTGGTATAGCCAGGGCTACATACAGAGACACTTCTTAACAAAG AAGGTTTGATTTATGATTGCCCGATAAATTGTGTATCTGTAGCTTAGATACCAGTATAAAAAGAAAAAACAAAATTAAGCTAGGCATAATGGTGGATCTTGTAATCCCTGCACTTGGGAGGGTGAGAC AGAAAATCGCTATAACTTGTTAGAGGTAGCTTTGGCTTCAGTAAGATCTTTCTCAAAAAGTAACAACAGAAACCCAGAAATGACCAGCTGTGGTGGCGATGGGCTCTCGTCCCTGCACTTGGGGAGCA GAGGCATGCAGGTCCTTGGGATTCTAACTAGCTTGGTCCACGTGGTCAGTTCCAAGCCAGCAGGGTTACCCAGACCCTAACAAGGAACAGAGAAAAAACAAAAACAAGCCCTGAGGAAGTAACTCAGA GGTAGAACATGCTGCTTAGCCTGCAAGAAGCCCTGGGTGCGTCCTTTGGCACCGTACGATTACAAGGAGACAAGGCCAGGAGAGCAAAGGAAACCATTGACACCAAACCTAAAAACAGGAGAGAAGCT GTGTTGACATGGCAGTGTGTGCGAAGCCATGCCTTCCAGGCTGTGTTTCCAGAGCACAGGAGGTGGCCAGACAGAGACTTCTGGGCTCCAAGTCTCTGCTCTAGAGATGGAAACTGGATATTGGCTGG ACTTTATAAAACCACAAGCAGGAGGATCAGTTTTTTAAAAAATTTAAATTAATTTTTGTTTGTCATTGTAACAATATCTTGCTTCCAAACATCTATTTATATAAAATCAAGCTCAAAACTCTTTAAAG TGTATACAATTTGGCCAAATTTTCTATATCACATGGGACACTGGTGCTTTCTGTAGCACTTAGCATCCTGTCAAAAAGGAGTGTGGCAGACATAGGGACTGACCGGGCTGGGGAGGTTTGTCCCTGTT TGATTTTGTGTGAGTGCATTGCTGCTTCTCTCAGTGTGGCCAGTAGAGTCTGTGCCCTAGAGTGCTCAGGTGACAAAGGGAGTGGGTGTCACTGCCACAGCCAGGAGCCAGCCACACACCCAGGCCCT TTGCTGACCTCCCTTCTCCCTTTGCTCTGTATATTCCCTCTGCTCAGACACTTTTGCAAAGATTTTCAGTGCTGGGTATTTGAGAAAGGGTTGGGACGGGTCTCTCTAGCATGAAGTGGATGTATGTG TTTGTATAGCTGGACACTACTTACGCTTGTTAGCAGTCAGGAACTACAG
hide sequence
RefSeq Acc Id:
XR_005501120
Type:
NON-CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 2 185,451,458 - 185,484,200 (-) NCBI mRatBN7.2 2 182,762,450 - 182,795,368 (-) NCBI
RefSeq Acc Id:
XP_227439 ⟸ XM_227439
- Sequence:
MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHAHIVELLVRSGADVNAKDMLQMTALHWATEHRHRDVVELLIKYGA DVHAFSKFDKSAFDIALEKNNTEILVMLQEAMQNQVNTNPERANPVANPVAVTAPFIFTSGEVVNLASFVSSANNTKATSANLEEIEEGNSLDSSIQQVVGSGGQRVITIVTDGVPLGNIQTAIPTGG IGQPFIVTMQDGQPVLTVPAGQVAEETIIEEEEEDEEKLPLVKRPRMAEMTNSVEEMKEGSERELLQQQLQEANRRAQEYRHQLLKKEQEAEQYRLRLEAMARQQPNGVDFTVVEEVAEVDAVVVTEG EEVERATHAMKSGRTTEPHTSVSIETVSS
hide sequence
RefSeq Acc Id:
XP_006232998 ⟸ XM_006232936
- Sequence:
MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSR DARTKVDRTPLHMAAADGHAHIVELLVRSGADVNAKDMLQMTALHWATEHRHRDVVELLIKYGADVHAFSKFDKSAFDIALEKNNTEILVMLQEAMQNQVNTNPERANPVANPVAVTAPFIFTSGEVV NLASFVSSANNTKATSANLEEIEEGNSLDSSIQQVVGSGGQRVITIVTDGVPLGNIQTAIPTGGIGQPFIVTMQDGQPVLTVPAGQVAEETIIEEEEEDEEKLPLVKRPRMAEMTNSVEEMKEGSERE LLQQQLQEANRRAQEYRHQLLKKEQEAEQYRLRLEAMARQQPNGVDFTVVEEVAEVDAVVVTEGEEVERATHAMKSGRTTEPHTSVSIETVSS
hide sequence
Ensembl Acc Id:
ENSRNOP00000028661 ⟸ ENSRNOT00000028661
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2018-05-25
Gabpb2
GA binding protein transcription factor subunit beta 2
Gabpb2
GA binding protein transcription factor, beta subunit 2
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-10-30
Gabpb2
GA binding protein transcription factor, beta subunit 2
Gabpb2
GA repeat binding protein, beta 2
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-03-07
Gabpb2
GA repeat binding protein, beta 2
RGD1565234_predicted
similar to transcription factor GABP beta 2-1 chain - mouse (predicted)
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2006-03-07
RGD1565234_predicted
similar to transcription factor GABP beta 2-1 chain - mouse (predicted)
LOC295263
similar to transcription factor GABP beta 2-1 chain - mouse
Symbol and Name status set to approved
1299863
APPROVED
2006-02-09
LOC295263
similar to transcription factor GABP beta 2-1 chain - mouse
Symbol and Name status set to provisional
70820
PROVISIONAL