GABPB2 (GA binding protein transcription factor subunit beta 2) - Rat Genome Database

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Gene: GABPB2 (GA binding protein transcription factor subunit beta 2) Sus scrofa
Analyze
Symbol: GABPB2
Name: GA binding protein transcription factor subunit beta 2
RGD ID: 13851040
Description: ENCODES a protein that exhibits identical protein binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GA binding protein transcription factor beta subunit 2; GA binding protein transcription factor, alpha subunit pseudogene; GA-binding protein subunit beta-2; GABPAP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,133,647 - 98,163,778 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,129,864 - 98,163,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,385,549 - 107,417,371 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GABPB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,133,647 - 98,163,778 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,129,864 - 98,163,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,385,549 - 107,417,371 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABPB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,070,761 - 151,125,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,070,578 - 151,125,542 (+)EnsemblGRCh38hg38GRCh38
GRCh371151,043,237 - 151,098,018 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,309,704 - 149,359,035 (+)NCBINCBI36Build 36hg18NCBI36
Celera1124,158,386 - 124,206,297 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,420,488 - 122,468,318 (+)NCBIHuRef
CHM1_11152,438,397 - 152,486,334 (+)NCBICHM1_1
T2T-CHM13v2.01150,194,444 - 150,249,243 (+)NCBIT2T-CHM13v2.0
Gabpb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,089,077 - 95,125,291 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,089,077 - 95,125,227 (-)EnsemblGRCm39 Ensembl
GRCm38395,181,766 - 95,218,110 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,181,766 - 95,217,916 (-)EnsemblGRCm38mm10GRCm38
MGSCv37394,985,688 - 95,021,864 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,272,854 - 95,303,113 (-)NCBIMGSCv36mm8
Celera396,612,834 - 96,648,906 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Gabpb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,444,309 - 185,484,200 (-)NCBIGRCr8
mRatBN7.22182,755,304 - 182,795,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,761,359 - 182,795,109 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02196,357,030 - 196,392,514 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,359,243 - 196,377,883 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,853,498 - 215,889,078 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,094,254 - 190,114,114 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2175,293,630 - 175,329,110 (-)NCBICelera
Cytogenetic Map2q34NCBI
Gabpb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588459,211 - 480,421 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955588439,822 - 477,159 (+)NCBIChiLan1.0ChiLan1.0
GABPB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,702,857 - 98,763,214 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,457,943 - 98,519,176 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,419,892 - 126,479,691 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,067,320 - 130,114,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,084,854 - 130,114,493 (+)Ensemblpanpan1.1panPan2
GABPB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,154,346 - 60,183,839 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,155,407 - 60,183,716 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,598,376 - 59,628,412 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,170,600 - 61,200,915 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,171,664 - 61,199,790 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,999,681 - 60,029,664 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,084,540 - 60,115,033 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,812,090 - 60,842,467 (+)NCBIUU_Cfam_GSD_1.0
Gabpb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,253,286 - 22,292,733 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,290,991 - 1,321,925 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,283,593 - 1,323,110 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABPB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,558,951 - 12,623,941 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603812,143,828 - 12,206,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabpb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477218,726,903 - 18,760,307 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GABPB2
728 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003125771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005663477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005663478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005663479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005663480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005663481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005663482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021089886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021089887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021089888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021089889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK235745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK239671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK240394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK351716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK400578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU138569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU459198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01077071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000007272   ⟹   ENSSSCP00000007077
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,133,647 - 98,163,778 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000042088   ⟹   ENSSSCP00000032979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,133,647 - 98,163,777 (-)Ensembl
RefSeq Acc Id: XM_003125771   ⟹   XP_003125819
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663477   ⟹   XP_005663534
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,921 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663478   ⟹   XP_005663535
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,133,640 - 98,163,945 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663479   ⟹   XP_005663536
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,133,640 - 98,163,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663480   ⟹   XP_005663537
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,913 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663481   ⟹   XP_005663538
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,920 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663482   ⟹   XP_005663539
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,955 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089886   ⟹   XP_020945545
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089887   ⟹   XP_020945546
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,927 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089888   ⟹   XP_020945547
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,929 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089889   ⟹   XP_020945548
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,129,864 - 98,163,740 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005663539   ⟸   XM_005663482
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VVV2 (UniProtKB/TrEMBL),   A0A286ZMX9 (UniProtKB/TrEMBL),   A0A8D1CDW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945547   ⟸   XM_021089888
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020945546   ⟸   XM_021089887
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005663534   ⟸   XM_005663477
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VVV2 (UniProtKB/TrEMBL),   A0A286ZMX9 (UniProtKB/TrEMBL),   A0A8D1CDW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663538   ⟸   XM_005663481
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005663537   ⟸   XM_005663480
- Peptide Label: isoform X2
- UniProtKB: F1SSX8 (UniProtKB/TrEMBL),   A0A4X1W0E4 (UniProtKB/TrEMBL),   A0A8D1CDW6 (UniProtKB/TrEMBL),   A0A8D0ID48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003125819   ⟸   XM_003125771
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VVV2 (UniProtKB/TrEMBL),   A0A286ZMX9 (UniProtKB/TrEMBL),   A0A8D1CDW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945548   ⟸   XM_021089889
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020945545   ⟸   XM_021089886
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005663535   ⟸   XM_005663478
- Peptide Label: isoform X2
- UniProtKB: F1SSX8 (UniProtKB/TrEMBL),   A0A4X1W0E4 (UniProtKB/TrEMBL),   A0A8D1CDW6 (UniProtKB/TrEMBL),   A0A8D0ID48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663536   ⟸   XM_005663479
- Peptide Label: isoform X2
- UniProtKB: F1SSX8 (UniProtKB/TrEMBL),   A0A4X1W0E4 (UniProtKB/TrEMBL),   A0A8D1CDW6 (UniProtKB/TrEMBL),   A0A8D0ID48 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000007077   ⟸   ENSSSCT00000007272
Ensembl Acc Id: ENSSSCP00000032979   ⟸   ENSSSCT00000042088


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006636 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015004667 UniProtKB/TrEMBL
  ENSSSCG00030058723 UniProtKB/TrEMBL
  ENSSSCG00070028077 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007272 ENTREZGENE
  ENSSSCT00000007272.5 UniProtKB/TrEMBL
  ENSSSCT00000042088 ENTREZGENE
  ENSSSCT00000042088.2 UniProtKB/TrEMBL
  ENSSSCT00015006280.1 UniProtKB/TrEMBL
  ENSSSCT00015006290.1 UniProtKB/TrEMBL
  ENSSSCT00015006293.1 UniProtKB/TrEMBL
  ENSSSCT00030081944.1 UniProtKB/TrEMBL
  ENSSSCT00070056335.1 UniProtKB/TrEMBL
  ENSSSCT00070056337.1 UniProtKB/TrEMBL
  ENSSSCT00070056338.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin-SOCS_Box UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report ssc:100152294 UniProtKB/TrEMBL
NCBI Gene GABPB2 ENTREZGENE
PANTHER ANKYRIN REPEAT PROTEIN UniProtKB/TrEMBL
  GA-BINDING PROTEIN SUBUNIT BETA-2 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A286ZMX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VVV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W0E4 ENTREZGENE
  A0A8D0ID48 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MEW9_PIG UniProtKB/TrEMBL
  A0A8D1CDW6 ENTREZGENE, UniProtKB/TrEMBL
  F1SSX8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1W0E4 UniProtKB/TrEMBL
VGNC ID VGNC:98796 ENTREZGENE