Morn2 (MORN repeat containing 2) - Rat Genome Database

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Gene: Morn2 (MORN repeat containing 2) Rattus norvegicus
Analyze
Symbol: Morn2
Name: MORN repeat containing 2
RGD ID: 1563988
Description: Orthologous to human MORN2 (MORN repeat containing 2); INTERACTS WITH acetamide; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC500606; MORN repeat-containing protein 2; RGD1563988; similar to protein containing single MORN motif in testis
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,471,036 - 20,477,520 (-)NCBIGRCr8
mRatBN7.2614,718,799 - 14,725,281 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx615,017,812 - 15,024,256 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0615,339,414 - 15,345,861 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0614,835,687 - 14,842,134 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.062,969,290 - 2,974,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl62,969,333 - 2,974,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.062,948,580 - 2,953,695 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.463,191,310 - 3,198,056 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera614,395,916 - 14,402,234 (-)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932  


Genomics

Comparative Map Data
Morn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,471,036 - 20,477,520 (-)NCBIGRCr8
mRatBN7.2614,718,799 - 14,725,281 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx615,017,812 - 15,024,256 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0615,339,414 - 15,345,861 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0614,835,687 - 14,842,134 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.062,969,290 - 2,974,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl62,969,333 - 2,974,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.062,948,580 - 2,953,695 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.463,191,310 - 3,198,056 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera614,395,916 - 14,402,234 (-)NCBICelera
Cytogenetic Map6q12NCBI
MORN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38238,875,976 - 38,882,709 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl238,875,976 - 38,929,072 (+)EnsemblGRCh38hg38GRCh38
GRCh37239,103,117 - 39,109,850 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36238,956,314 - 39,041,343 (+)NCBINCBI36Build 36hg18NCBI36
Celera238,943,818 - 38,950,565 (+)NCBICelera
Cytogenetic Map2p22.1NCBI
HuRef238,841,594 - 38,848,341 (+)NCBIHuRef
CHM1_1239,033,577 - 39,040,325 (+)NCBICHM1_1
T2T-CHM13v2.0238,884,462 - 38,891,196 (+)NCBIT2T-CHM13v2.0
Morn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391780,597,626 - 80,613,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1780,597,632 - 80,604,905 (+)EnsemblGRCm39 Ensembl
GRCm381780,290,203 - 80,300,096 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1780,290,203 - 80,297,476 (+)EnsemblGRCm38mm10GRCm38
MGSCv371780,689,552 - 80,696,814 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361780,198,538 - 80,205,800 (+)NCBIMGSCv36mm8
Celera1784,607,978 - 84,615,360 (+)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1750.63NCBI
Morn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004956800124 - 2,031 (-)NCBIChiLan1.0ChiLan1.0
MORN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21287,586,046 - 87,593,066 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A87,589,998 - 87,597,041 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A38,913,533 - 38,920,189 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A39,668,551 - 39,675,243 (+)NCBIpanpan1.1PanPan1.1panPan2
MORN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11730,913,780 - 30,921,190 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1730,913,802 - 30,921,190 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1730,729,932 - 30,737,383 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01731,569,537 - 31,576,981 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1731,569,563 - 31,576,981 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11730,791,475 - 30,798,907 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01730,861,056 - 30,868,505 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01731,074,497 - 31,081,931 (+)NCBIUU_Cfam_GSD_1.0
Morn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629240,940,542 - 40,951,290 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650812,371,272 - 12,379,917 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MORN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3101,452,512 - 101,458,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13101,452,657 - 101,458,859 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23107,607,790 - 107,611,261 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MORN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11468,503,747 - 68,509,073 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1468,503,901 - 68,504,960 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604543,471,985 - 43,477,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Morn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473820,372,796 - 20,374,525 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473820,368,079 - 20,374,523 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Morn2
33 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:80
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000047356
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 22 15 1
Low 3 43 55 41 19 41 6 8 74 13 26 10 6
Below cutoff 2 3 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000047356   ⟹   ENSRNOP00000043297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl62,969,333 - 2,974,418 (+)Ensembl
RefSeq Acc Id: NM_001126086   ⟹   NP_001119558
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,471,036 - 20,477,483 (-)NCBI
mRatBN7.2614,718,799 - 14,725,246 (-)NCBI
Rnor_6.062,969,333 - 2,974,419 (+)NCBI
Rnor_5.062,948,580 - 2,953,695 (+)NCBI
RGSC_v3.463,191,310 - 3,198,056 (+)RGD
Celera614,395,916 - 14,402,234 (-)RGD
Sequence:
RefSeq Acc Id: NM_001145449   ⟹   NP_001138921
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,471,036 - 20,477,483 (-)NCBI
mRatBN7.2614,718,799 - 14,725,246 (-)NCBI
Rnor_6.062,969,333 - 2,974,419 (+)NCBI
Rnor_5.062,948,580 - 2,953,695 (+)NCBI
RGSC_v3.463,191,310 - 3,198,056 (+)RGD
Celera614,395,916 - 14,402,234 (-)RGD
Sequence:
RefSeq Acc Id: XM_006239651   ⟹   XP_006239713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,471,052 - 20,477,520 (-)NCBI
mRatBN7.2614,718,799 - 14,725,281 (-)NCBI
Rnor_6.062,969,290 - 2,974,419 (+)NCBI
Rnor_5.062,948,580 - 2,953,695 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001119558   ⟸   NM_001126086
- Peptide Label: isoform 1
- UniProtKB: B2RYT2 (UniProtKB/TrEMBL),   F7EUL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001138921   ⟸   NM_001145449
- Peptide Label: isoform 2
- UniProtKB: A6H9R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239713   ⟸   XM_006239651
- Peptide Label: isoform X1
- UniProtKB: A6H9R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000043297   ⟸   ENSRNOT00000047356

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYT2-F1-model_v2 AlphaFold B2RYT2 1-128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694367
Promoter ID:EPDNEW_R4892
Type:initiation region
Name:Morn2_1
Description:MORN repeat containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.062,969,339 - 2,969,399EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563988 AgrOrtholog
BioCyc Gene G2FUF-38525 BioCyc
Ensembl Genes ENSRNOG00000030319 Ensembl
Gene3D-CATH Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919817 IMAGE-MGC_LOAD
InterPro MORN UniProtKB/TrEMBL
KEGG Report rno:500606 UniProtKB/TrEMBL
MGC_CLONE MGC:188844 IMAGE-MGC_LOAD
NCBI Gene 500606 ENTREZGENE
PANTHER MORN REPEAT-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  MORN REPEAT-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam MORN UniProtKB/TrEMBL
PhenoGen Morn2 PhenoGen
RatGTEx ENSRNOG00000030319 RatGTEx
SMART MORN UniProtKB/TrEMBL
Superfamily-SCOP Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/TrEMBL
UniProt A6H9R0 ENTREZGENE, UniProtKB/TrEMBL
  B2RYT2 ENTREZGENE, UniProtKB/TrEMBL
  F7EUL7 ENTREZGENE
UniProt Secondary F7EUL7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Morn2  MORN repeat containing 2  RGD1563988_predicted  similar to protein containing single MORN motif in testis (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563988_predicted  similar to protein containing single MORN motif in testis (predicted)  LOC500606  similar to protein containing single MORN motif in testis  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500606  similar to protein containing single MORN motif in testis      Symbol and Name status set to provisional 70820 PROVISIONAL