Greb1l (GREB1 like retinoic acid receptor coactivator) - Rat Genome Database

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Gene: Greb1l (GREB1 like retinoic acid receptor coactivator) Rattus norvegicus
Analyze
Symbol: Greb1l
Name: GREB1 like retinoic acid receptor coactivator
RGD ID: 1562371
Description: Predicted to be involved in kidney development and morphogenesis of an epithelium. Predicted to act upstream of or within several processes, including heart development; kidney development; and reproductive structure development. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 80 and renal agenesis. Orthologous to human GREB1L (GREB1 like retinoic acid receptor coactivator); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 3',5'-cyclic AMP.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: growth regulation by estrogen in breast cancer 1 like; growth regulation by estrogen in breast cancer-like; LOC498819; RGD1562371; similar to GREB1 protein isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8181,665,468 - 1,902,291 (+)NCBIGRCr8
mRatBN7.2181,392,330 - 1,629,483 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,392,725 - 1,628,067 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0181,537,315 - 1,784,260 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,723,565 - 1,784,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,757,633 - 1,821,402 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0181,704,334 - 1,742,157 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4181,795,820 - 1,908,522 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera181,273,512 - 1,511,753 (+)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 15 of 15 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Greb1lRatautosomal dominant nonsyndromic deafness  ISORGD:13516438554872ClinVar Annotator: match by term: Autosomal dominant nonsyndromic hearing lossClinVarPMID:25741868|PMID:32585897
Greb1lRatautosomal dominant nonsyndromic deafness 80  ISORGD:13516438554872ClinVar Annotator: match by term: DEAFNESS, AUTOSOMAL DOMINANT 80 | ClinVar Annotator: match by term: more ...ClinVarPMID:25741868|PMID:28492532|PMID:29100090|PMID:29955957|PMID:30311386|PMID:32378186|PMID:32585897
Greb1lRatbranchiootic syndrome  ISORGD:13516438554872ClinVar Annotator: match by term: Inner ear malformationClinVarPMID:29955957
Greb1lRatCAKUT  ISORGD:13516438554872ClinVar Annotator: match by term: Congenital anomalies of kidney and urinary tractClinVarPMID:25741868|PMID:29100090|PMID:30143558
Greb1lRatDwarfism  ISORGD:13516438554872ClinVar Annotator: match by term: Short statureClinVar 
Greb1lRatidiopathic scoliosis  ISORGD:13516438554872ClinVar Annotator: match by term: Scoliosis, isolated, susceptibility to, 1ClinVarPMID:25741868
Greb1lRatintellectual disability  ISORGD:13516438554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Greb1lRatMayer-Rokitansky-Kuster-Hauser syndrome  ISORGD:13516438554872ClinVar Annotator: match by term: Mayer-Rokitansky-Kuster-Hauser syndromeClinVarPMID:25741868|PMID:28492532|PMID:29100090|PMID:32378186|PMID:32585897
Greb1lRatMayer-Rokitansky-Kuster-Hauser syndrome type 1  ISORGD:13516438554872ClinVar Annotator: match by term: Mayer Rokitansky Kuster Hauser syndrome type 1 | ClinVar Annotator: more ...ClinVarPMID:25741868|PMID:28492532
Greb1lRatMayer-Rokitansky-Kuster-Hauser syndrome type 2  ISORGD:13516438554872ClinVar Annotator: match by term: Klippel-feil deformity, conductive deafness, and absent vaginaClinVarPMID:25741868
Greb1lRatNiemann-Pick disease type C1  ISORGD:13516438554872ClinVar Annotator: match by term: Niemann-Pick disease, type C1ClinVarPMID:28492532
Greb1lRatrenal agenesis  ISORGD:13516438554872ClinVar Annotator: match by term: Renal agenesisClinVarPMID:25741868|PMID:35005812
Greb1lRatRenal Hypodysplasia/Aplasia 1  ISORGD:13516438554872ClinVar Annotator: match by term: Renal agenesis and hypodysplasiaClinVarPMID:28492532|PMID:29100090
Greb1lRatRenal Hypodysplasia/Aplasia 3  ISORGD:13516438554872ClinVar Annotator: match by term: GREB1L-related condition | ClinVar Annotator: match by term: Renal hypodysplasia/aplasia more ...ClinVarPMID:25741868|PMID:28492532|PMID:28739660|PMID:29100090|PMID:29100091|PMID:30143558|PMID:31424080|PMID:32378186|PMID:32585897|PMID:32598191|PMID:33532864|PMID:33548512
Greb1lRatspermatogenic failure 57  ISORGD:13516438554872ClinVar Annotator: match by term: Male infertility with azoospermia or oligozoospermia due to single gene more ...ClinVarPMID:25741868
1 to 15 of 15 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Greb1lRatautosomal dominant nonsyndromic deafness 80  ISORGD:13516437240710 OMIM 
Greb1lRatRenal Hypodysplasia/Aplasia 3  ISORGD:13516437240710 OMIM 

1 to 20 of 58 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Greb1lRat(-)-alpha-phellandrene increases expressionISORGD:13516436480464alpha phellandrene results in increased expression of GREB1L mRNACTDPMID:25075043
Greb1lRat(-)-epigallocatechin 3-gallate multiple interactionsISORGD:13516436480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of GREB1L mRNACTDPMID:22079256
Greb1lRat1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane multiple interactionsEXP 64804642,2-bis(4-hydroxyphenyl)-1,1,1-trichloroethane affects the reaction [Cyclic AMP affects the expression of GREB1L mRNA]; 2,2-bis(4-hydroxyphenyl)-1,1,1-trichloroethane affects the more ...CTDPMID:19414516
Greb1lRat1,2-dimethylhydrazine decreases expressionISORGD:162194864804641,2-Dimethylhydrazine results in decreased expression of GREB1L mRNACTDPMID:22206623
Greb1lRat17beta-estradiol increases expressionISORGD:16219486480464Estradiol results in increased expression of GREB1L mRNACTDPMID:39298647
Greb1lRat17beta-estradiol increases expressionISORGD:13516436480464Estradiol results in increased expression of GREB1L mRNACTDPMID:31614463
Greb1lRat2,3',4,4',5-Pentachlorobiphenyl affects expressionISORGD:162194864804642,3',4,4',5-pentachlorobiphenyl affects the expression of GREB1L mRNACTDPMID:31388691
Greb1lRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of GREB1L mRNACTDPMID:32109520|PMID:33387578
Greb1lRat3',5'-cyclic AMP multiple interactionsEXP 64804642,2-bis(4-hydroxyphenyl)-1,1,1-trichloroethane affects the reaction [Cyclic AMP affects the expression of GREB1L mRNA]CTDPMID:19414516
Greb1lRat4,4'-sulfonyldiphenol decreases expressionISORGD:16219486480464bisphenol S results in decreased expression of GREB1L mRNACTDPMID:39298647
Greb1lRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of GREB1L mRNACTDPMID:24780913
Greb1lRatacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of GREB1L mRNACTDPMID:28959563
Greb1lRatAlisol A multiple interactionsEXP 6480464[alisol A co-treated with alisol A 24-acetate co-treated with alisol B co-treated with alisol B more ...CTDPMID:33035272
Greb1lRatAlisol B multiple interactionsEXP 6480464[alisol A co-treated with alisol A 24-acetate co-treated with alisol B co-treated with alisol B more ...CTDPMID:33035272
Greb1lRatAlisol C 23-acetate multiple interactionsEXP 6480464[alisol A co-treated with alisol A 24-acetate co-treated with alisol B co-treated with alisol B more ...CTDPMID:33035272
Greb1lRatall-trans-retinoic acid decreases expressionISORGD:13516436480464Tretinoin results in decreased expression of GREB1L mRNACTDPMID:21934132
Greb1lRatall-trans-retinoic acid increases expressionISORGD:16219486480464Tretinoin results in increased expression of GREB1L mRNACTDPMID:15688020|PMID:16038797
Greb1lRatalpha-phellandrene increases expressionISORGD:13516436480464alpha phellandrene results in increased expression of GREB1L mRNACTDPMID:25075043
Greb1lRataristolochic acid A decreases expressionISORGD:13516436480464aristolochic acid I results in decreased expression of GREB1L mRNACTDPMID:33212167
Greb1lRatarsenite(3-) increases methylationISORGD:13516436480464arsenite results in increased methylation of GREB1L promoterCTDPMID:23974009

1 to 20 of 58 rows

Biological Process
1 to 20 of 32 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Greb1lRatbranching involved in ureteric bud morphogenesis acts_upstream_of_or_withinISORGD:16219481624291 PMID:29100091RGDPMID:29100091
Greb1lRatbranching involved in ureteric bud morphogenesis acts_upstream_of_or_withinIEAUniProtKB:B9EJV3|ensembl:ENSMUSP000000490031600115GO_REF:0000107EnsemblGO_REF:0000107
Greb1lRatcardiac muscle cell differentiation acts_upstream_of_or_withinISORGD:16219481624291 PMID:37852253RGDPMID:37852253
Greb1lRatcardiac muscle cell differentiation acts_upstream_of_or_withinIEAUniProtKB:B9EJV3|ensembl:ENSMUSP000000490031600115GO_REF:0000107EnsemblGO_REF:0000107
Greb1lRatcardiac ventricle development acts_upstream_of_or_withinISORGD:16219481624291 PMID:29100091RGDPMID:29100091
Greb1lRatcardiac ventricle development acts_upstream_of_or_withinIEAUniProtKB:B9EJV3|ensembl:ENSMUSP000000490031600115GO_REF:0000107EnsemblGO_REF:0000107
Greb1lRatembryonic heart tube development acts_upstream_of_or_withinIEAUniProtKB:B9EJV3|ensembl:ENSMUSP000000490031600115GO_REF:0000107EnsemblGO_REF:0000107
Greb1lRatembryonic heart tube development acts_upstream_of_or_withinISORGD:16219481624291 PMID:37852253RGDPMID:37852253
Greb1lRatepithelial tube morphogenesis acts_upstream_of_or_withinIEAUniProtKB:B9EJV3|ensembl:ENSMUSP000000490031600115GO_REF:0000107EnsemblGO_REF:0000107
Greb1lRatepithelial tube morphogenesis acts_upstream_of_or_withinISORGD:16219481624291 PMID:29100091RGDPMID:29100091
Greb1lRatkidney development involved_inISORGD:13516431624291 PMID:29100090RGDPMID:29100090
Greb1lRatkidney development acts_upstream_of_or_withinIEAUniProtKB:B9EJV3|ensembl:ENSMUSP000000490031600115GO_REF:0000107EnsemblGO_REF:0000107
Greb1lRatkidney development acts_upstream_of_or_withinISORGD:16219481624291 PMID:29100091RGDPMID:29100091
Greb1lRatkidney development involved_inIBAMGI:3576497|PANTHER:PTN002696408|UniProtKB:Q9C091|ZFIN:ZDB-GENE-030131-40221600115GO_REF:0000033GO_CentralGO_REF:0000033
Greb1lRatkidney development acts_upstream_of_or_withinISORGD:13516431624291 PMID:29100091RGDPMID:29100091
Greb1lRatmale genitalia development acts_upstream_of_or_withinIEAUniProtKB:B9EJV3|ensembl:ENSMUSP000000490031600115GO_REF:0000107EnsemblGO_REF:0000107
Greb1lRatmale genitalia development acts_upstream_of_or_withinISORGD:16219481624291 PMID:29100091RGDPMID:29100091
Greb1lRatmesonephric duct development acts_upstream_of_or_withinIEAUniProtKB:B9EJV3|ensembl:ENSMUSP000000490031600115GO_REF:0000107EnsemblGO_REF:0000107
Greb1lRatmesonephric duct development acts_upstream_of_or_withinISORGD:16219481624291 PMID:29100091RGDPMID:29100091
Greb1lRatmetanephros development acts_upstream_of_or_withinISORGD:16219481624291 PMID:29100091RGDPMID:29100091
1 to 20 of 32 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Greb1lRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Greb1lRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:29100090   PMID:29100091  



Greb1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8181,665,468 - 1,902,291 (+)NCBIGRCr8
mRatBN7.2181,392,330 - 1,629,483 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,392,725 - 1,628,067 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0181,537,315 - 1,784,260 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,723,565 - 1,784,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,757,633 - 1,821,402 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0181,704,334 - 1,742,157 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4181,795,820 - 1,908,522 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera181,273,512 - 1,511,753 (+)NCBICelera
Cytogenetic Map18p13NCBI
GREB1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381821,242,232 - 21,526,112 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1821,242,232 - 21,526,112 (+)EnsemblGRCh38hg38GRCh38
GRCh371818,822,193 - 19,106,073 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361817,076,317 - 17,356,789 (+)NCBINCBI36Build 36hg18NCBI36
Build 341817,076,200 - 17,342,674NCBI
Celera1815,628,176 - 15,908,773 (+)NCBICelera
Cytogenetic Map18q11.1-q11.2NCBI
HuRef1815,669,485 - 15,949,616 (+)NCBIHuRef
CHM1_11818,749,282 - 19,029,843 (+)NCBICHM1_1
T2T-CHM13v2.01821,427,291 - 21,711,206 (+)NCBIT2T-CHM13v2.0
Greb1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391810,324,933 - 10,562,945 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1810,325,177 - 10,562,940 (+)EnsemblGRCm39 Ensembl
GRCm381810,324,933 - 10,562,945 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1810,325,177 - 10,562,940 (+)EnsemblGRCm38mm10GRCm38
MGSCv371810,325,177 - 10,562,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361810,325,175 - 10,562,939 (+)NCBIMGSCv36mm8
MGSCv361810,327,252 - 10,429,003 (+)NCBIMGSCv36mm8
Celera1810,354,956 - 10,592,831 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map185.0NCBI
Greb1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540210,104,225 - 10,201,479 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554029,865,934 - 10,204,990 (+)NCBIChiLan1.0ChiLan1.0
GREB1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21738,660,383 - 38,942,862 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11824,352,918 - 24,635,444 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01814,482,493 - 14,763,789 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11818,120,919 - 18,402,948 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1818,244,575 - 18,400,335 (+)Ensemblpanpan1.1panPan2
GREB1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1766,489,124 - 66,758,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl766,503,999 - 66,639,013 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha765,943,213 - 66,212,115 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0766,553,669 - 66,823,094 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl766,566,632 - 66,703,721 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1766,231,940 - 66,488,010 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0766,242,907 - 66,511,844 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0766,544,142 - 66,813,301 (-)NCBIUU_Cfam_GSD_1.0
Greb1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494462,574,871 - 62,832,489 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365501,122,260 - 1,238,682 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365501,110,679 - 1,240,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GREB1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6106,419,943 - 106,691,625 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16106,545,882 - 106,693,711 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2698,943,800 - 99,199,449 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GREB1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11858,960,397 - 59,104,188 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1858,963,914 - 59,103,993 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605033,745,325 - 34,041,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Greb1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477010,225,669 - 10,345,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477010,223,131 - 10,471,309 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Greb1l
1234 total Variants

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000033468
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat

RH131132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,539,251 - 1,539,471 (+)MAPPERmRatBN7.2
Rnor_6.0181,685,936 - 1,686,155NCBIRnor6.0
Rnor_5.0181,731,947 - 1,732,166UniSTSRnor5.0
RGSC_v3.4181,818,161 - 1,818,380UniSTSRGSC3.4
Celera181,421,558 - 1,421,777UniSTS
RH 3.4 Map1810.3UniSTS
Cytogenetic Map18p13UniSTS
RH131955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,595,838 - 1,596,058 (+)MAPPERmRatBN7.2
Rnor_6.0181,753,708 - 1,753,927NCBIRnor6.0
Rnor_5.0181,787,681 - 1,787,900UniSTSRnor5.0
Celera181,478,108 - 1,478,327UniSTS
RH 3.4 Map1810.3UniSTS
Cytogenetic Map18p13UniSTS
AU047007  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,506,556 - 1,506,704 (+)MAPPERmRatBN7.2
Rnor_6.0181,653,242 - 1,653,389NCBIRnor6.0
Rnor_5.0181,699,253 - 1,699,400UniSTSRnor5.0
RGSC_v3.4181,784,411 - 1,784,558UniSTSRGSC3.4
Celera181,388,726 - 1,388,873UniSTS
Cytogenetic Map18p13UniSTS
RH138057  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,627,713 - 1,627,922 (+)MAPPERmRatBN7.2
Rnor_6.0181,785,660 - 1,785,868NCBIRnor6.0
Rnor_5.0181,819,633 - 1,819,841UniSTSRnor5.0
RGSC_v3.4181,931,159 - 1,931,367UniSTSRGSC3.4
Celera181,509,984 - 1,510,192UniSTS
RH 3.4 Map1812.5UniSTS
Cytogenetic Map18p13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 48 113 91 90 59 25 59 6 217 96 93 45 60 31



Ensembl Acc Id: ENSRNOT00000033468   ⟹   ENSRNOP00000029000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,392,725 - 1,628,067 (+)Ensembl
Rnor_6.0 Ensembl181,723,565 - 1,784,233 (+)Ensembl
RefSeq Acc Id: XM_039097265   ⟹   XP_038953193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,665,469 - 1,902,291 (+)NCBI
mRatBN7.2181,392,330 - 1,629,483 (+)NCBI
RefSeq Acc Id: XM_039097266   ⟹   XP_038953194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,766,117 - 1,902,291 (+)NCBI
mRatBN7.2181,492,428 - 1,629,483 (+)NCBI
RefSeq Acc Id: XM_039097267   ⟹   XP_038953195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,665,469 - 1,902,291 (+)NCBI
mRatBN7.2181,392,330 - 1,629,483 (+)NCBI
RefSeq Acc Id: XM_039097268   ⟹   XP_038953196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,665,469 - 1,902,291 (+)NCBI
mRatBN7.2181,392,330 - 1,629,483 (+)NCBI
RefSeq Acc Id: XM_039097269   ⟹   XP_038953197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,766,116 - 1,902,291 (+)NCBI
mRatBN7.2181,492,428 - 1,629,483 (+)NCBI
RefSeq Acc Id: XM_039097270   ⟹   XP_038953198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,665,473 - 1,902,291 (+)NCBI
mRatBN7.2181,392,331 - 1,629,483 (+)NCBI
RefSeq Acc Id: XM_039097272   ⟹   XP_038953200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8181,665,468 - 1,902,291 (+)NCBI
mRatBN7.2181,392,330 - 1,629,483 (+)NCBI
Ensembl Acc Id: ENSRNOP00000029000   ⟸   ENSRNOT00000033468
RefSeq Acc Id: XP_038953195   ⟸   XM_039097267
- Peptide Label: isoform X1
- UniProtKB: A6KNE1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953196   ⟸   XM_039097268
- Peptide Label: isoform X1
- UniProtKB: A6KNE1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953193   ⟸   XM_039097265
- Peptide Label: isoform X1
- UniProtKB: A6KNE1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953200   ⟸   XM_039097272
- Peptide Label: isoform X3
- UniProtKB: A6KNE1 (UniProtKB/TrEMBL)
GREB1 N-terminal   GREB1-like C-terminal   GREB1-like circularly permuted SF2 helicase   GREB1-like second   TET-Associated Glycosyltransferase

Name Modeler Protein Id AA Range Protein Structure
AF-F1LTR0-F1-model_v2 AlphaFold F1LTR0 1-1457 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 23 of 23 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-8417 BioCyc
Ensembl Genes ENSRNOG00000023492 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033468 ENTREZGENE
  ENSRNOT00000033468.7 UniProtKB/TrEMBL
  ENSRNOT00000156299 ENTREZGENE
InterPro GREB1 UniProtKB/TrEMBL
  GREB1-like_2nd UniProtKB/TrEMBL
  GREB1-like_cpSF2 UniProtKB/TrEMBL
  GREB1_C UniProtKB/TrEMBL
  GREB1_N UniProtKB/TrEMBL
  TAGT UniProtKB/TrEMBL
NCBI Gene 498819 ENTREZGENE
PANTHER PTHR15720 UniProtKB/TrEMBL
  PTHR15720:SF12 UniProtKB/TrEMBL
Pfam cpSF2-GREB1 UniProtKB/TrEMBL
  GREB1 UniProtKB/TrEMBL
  GREB1_2nd UniProtKB/TrEMBL
  GREB1_C UniProtKB/TrEMBL
  TAGT UniProtKB/TrEMBL
PhenoGen Greb1l PhenoGen
RatGTEx ENSRNOG00000023492 RatGTEx
UniProt A6KNE1 ENTREZGENE, UniProtKB/TrEMBL
  F1LTR0 ENTREZGENE, UniProtKB/TrEMBL
1 to 23 of 23 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-04-04 Greb1l  GREB1 like retinoic acid receptor coactivator  Greb1l  growth regulation by estrogen in breast cancer 1 like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-06-22 Greb1l  growth regulation by estrogen in breast cancer 1 like  Greb1l  growth regulation by estrogen in breast cancer-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-25 Greb1l  growth regulation by estrogen in breast cancer-like  RGD1562371  similar to GREB1 protein isoform a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562371  similar to GREB1 protein isoform a   RGD1562371_predicted  similar to GREB1 protein isoform a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562371_predicted  similar to GREB1 protein isoform a (predicted)  LOC498819  similar to GREB1 protein isoform a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498819  similar to GREB1 protein isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL