Greb1l (GREB1 like retinoic acid receptor coactivator) - Rat Genome Database

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Gene: Greb1l (GREB1 like retinoic acid receptor coactivator) Ictidomys tridecemlineatus
Analyze
Symbol: Greb1l
Name: GREB1 like retinoic acid receptor coactivator
RGD ID: 12449688
Description: INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); cardiac ventricle development (ortholog); epithelial tube morphogenesis (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); Autosomal Dominant Nonsyndromic Deafness 80 (ortholog); branchiootic syndrome (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: growth regulation by estrogen in breast cancer 1 like; growth regulation by estrogen in breast cancer 1 like, transcript variant X1; growth regulation by estrogen in breast cancer 1 like, transcript variant X2; growth regulation by estrogen in breast cancer 1 like, transcript variant X3; LOC110598521; uncharacterized LOC110598521
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494462,574,871 - 62,832,489 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365501,122,260 - 1,238,682 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365501,110,679 - 1,240,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Greb1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494462,574,871 - 62,832,489 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365501,122,260 - 1,238,682 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365501,110,679 - 1,240,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GREB1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381821,242,232 - 21,526,112 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1821,242,232 - 21,526,112 (+)EnsemblGRCh38hg38GRCh38
GRCh371818,822,193 - 19,106,073 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361817,076,317 - 17,356,789 (+)NCBINCBI36Build 36hg18NCBI36
Build 341817,076,200 - 17,342,674NCBI
Celera1815,628,176 - 15,908,773 (+)NCBICelera
Cytogenetic Map18q11.1-q11.2NCBI
HuRef1815,669,485 - 15,949,616 (+)NCBIHuRef
CHM1_11818,749,282 - 19,029,843 (+)NCBICHM1_1
T2T-CHM13v2.01821,427,291 - 21,711,206 (+)NCBIT2T-CHM13v2.0
Greb1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391810,324,933 - 10,562,945 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1810,325,177 - 10,562,940 (+)EnsemblGRCm39 Ensembl
GRCm381810,324,933 - 10,562,945 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1810,325,177 - 10,562,940 (+)EnsemblGRCm38mm10GRCm38
MGSCv371810,325,177 - 10,562,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361810,325,175 - 10,562,939 (+)NCBIMGSCv36mm8
MGSCv361810,327,252 - 10,429,003 (+)NCBIMGSCv36mm8
Celera1810,354,956 - 10,592,831 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map185.0NCBI
Greb1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8181,665,468 - 1,902,291 (+)NCBIGRCr8
mRatBN7.2181,392,330 - 1,629,483 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,392,725 - 1,628,067 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0181,537,315 - 1,784,260 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,723,565 - 1,784,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,757,633 - 1,821,402 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0181,704,334 - 1,742,157 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4181,795,820 - 1,908,522 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera181,273,512 - 1,511,753 (+)NCBICelera
Cytogenetic Map18p13NCBI
Greb1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540210,104,225 - 10,201,479 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554029,865,934 - 10,204,990 (+)NCBIChiLan1.0ChiLan1.0
GREB1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21738,660,383 - 38,942,862 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11824,352,918 - 24,635,444 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01814,482,493 - 14,763,789 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11818,120,919 - 18,402,948 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1818,244,575 - 18,400,335 (+)Ensemblpanpan1.1panPan2
GREB1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1766,489,124 - 66,758,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl766,503,999 - 66,639,013 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha765,943,213 - 66,212,115 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0766,553,669 - 66,823,094 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl766,566,632 - 66,703,721 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1766,231,940 - 66,488,010 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0766,242,907 - 66,511,844 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0766,544,142 - 66,813,301 (-)NCBIUU_Cfam_GSD_1.0
GREB1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6106,419,943 - 106,691,625 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16106,545,882 - 106,693,711 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2698,943,800 - 99,199,449 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GREB1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11858,960,397 - 59,104,188 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1858,963,914 - 59,103,993 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605033,745,325 - 34,041,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Greb1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477010,225,669 - 10,345,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477010,223,131 - 10,471,309 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000026438   ⟹   ENSSTOP00000022617
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365501,122,260 - 1,238,682 (+)Ensembl
RefSeq Acc Id: XM_005329029   ⟹   XP_005329086
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,831,860 (-)NCBI
SpeTri2.0NW_0049365501,110,679 - 1,240,463 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728910   ⟹   XP_021584585
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,708,176 (-)NCBI
SpeTri2.0NW_0049365501,110,679 - 1,240,463 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728911   ⟹   XP_021584586
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,831,860 (-)NCBI
SpeTri2.0NW_0049365501,110,679 - 1,240,463 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274506   ⟹   XP_040130440
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,831,861 (-)NCBI
RefSeq Acc Id: XM_040274509   ⟹   XP_040130443
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,831,406 (-)NCBI
RefSeq Acc Id: XM_040274511   ⟹   XP_040130445
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,832,489 (-)NCBI
RefSeq Acc Id: XM_040274520   ⟹   XP_040130454
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,831,862 (-)NCBI
RefSeq Acc Id: XM_040274525   ⟹   XP_040130459
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,831,862 (-)NCBI
RefSeq Acc Id: XM_040274530   ⟹   XP_040130464
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,574,871 - 62,831,861 (-)NCBI
RefSeq Acc Id: XR_002484368
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494462,585,825 - 62,831,866 (-)NCBI
SpeTri2.0NW_0049365501,110,679 - 1,229,170 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005329086   ⟸   XM_005329029
- Peptide Label: isoform X6
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584585   ⟸   XM_021728910
- Peptide Label: isoform X1
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584586   ⟸   XM_021728911
- Peptide Label: isoform X2
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130445   ⟸   XM_040274511
- Peptide Label: isoform X1
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130454   ⟸   XM_040274520
- Peptide Label: isoform X3
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130459   ⟸   XM_040274525
- Peptide Label: isoform X4
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130464   ⟸   XM_040274530
- Peptide Label: isoform X5
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130440   ⟸   XM_040274506
- Peptide Label: isoform X1
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130443   ⟸   XM_040274509
- Peptide Label: isoform X1
- UniProtKB: I3NE20 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000022617   ⟸   ENSSTOT00000026438
Protein Domains
GREB1 N-terminal   GREB1-like C-terminal   GREB1-like circularly permuted SF2 helicase   GREB1-like second   TET-Associated Glycosyltransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019416 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026438.2 UniProtKB/TrEMBL
InterPro GREB1 UniProtKB/TrEMBL
  GREB1-like_2nd UniProtKB/TrEMBL
  GREB1-like_cpSF2 UniProtKB/TrEMBL
  GREB1_C UniProtKB/TrEMBL
  GREB1_N UniProtKB/TrEMBL
  TAGT UniProtKB/TrEMBL
NCBI Gene Greb1l ENTREZGENE
PANTHER PTHR15720 UniProtKB/TrEMBL
  PTHR15720:SF12 UniProtKB/TrEMBL
Pfam cpSF2-GREB1 UniProtKB/TrEMBL
  GREB1 UniProtKB/TrEMBL
  GREB1_2nd UniProtKB/TrEMBL
  GREB1_C UniProtKB/TrEMBL
  TAGT UniProtKB/TrEMBL
UniProt I3NE20 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 Greb1l  GREB1 like retinoic acid receptor coactivator  LOC110598521  uncharacterized LOC110598521  Data merged from RGD:12976432 737654 PROVISIONAL
2018-03-27 Greb1l  GREB1 like retinoic acid receptor coactivator    growth regulation by estrogen in breast cancer 1 like  Symbol and/or name change 5135510 APPROVED