Vom1r20 (vomeronasal 1 receptor 20) - Rat Genome Database

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Gene: Vom1r20 (vomeronasal 1 receptor 20) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Vom1r20
Name: vomeronasal 1 receptor 20
RGD ID: 1359652
Description: Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R4 (vomeronasal 1 receptor 4).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V1rf1; vomernasal 1 receptor Vom1r20; vomeronasal 1 receptor, 20; vomeronasal 1 receptor, F1; vomeronasal type-1 receptor 4; vomeronasal V1r-type receptor V1rf1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,581,345 - 69,582,316 (+)NCBIGRCr8
mRatBN7.2160,908,396 - 60,913,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl160,906,144 - 60,910,686 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0161,132,818 - 61,133,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl161,132,818 - 61,133,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,297,765 - 62,298,673 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4158,822,073 - 58,822,981 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1158,825,017 - 58,825,926 (+)NCBI
Celera157,027,739 - 57,028,647 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Vom1r20RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r20RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR0040721600115GO_REF:0000002InterProGO_REF:0000002
Vom1r20Ratresponse to pheromone involved_inIEAUniProtKB-KW:KW-05891600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r20Ratsensory perception of chemical stimulus involved_inIEAARBA:ARBA000279521600115GO_REF:0000117UniProtGO_REF:0000117
Vom1r20Ratsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Vom1r20Ratmembrane located_inIEAInterPro:IPR004072 and InterPro:IPR0174521600115GO_REF:0000002InterProGO_REF:0000002
Vom1r20Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r20Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Vom1r20Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Vom1r20RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r20Ratpheromone receptor activity enablesIEAInterPro:IPR0040721600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:19952141  



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Variants in Vom1r20
59 total Variants

Predicted Target Of
Summary Value
Count of predictions:6
Count of miRNA genes:6
Interacting mature miRNAs:6
Transcripts:ENSRNOT00000041434
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 47 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat

1 to 10 of 47 rows



ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
nervous system
reproductive system
4 2 2 2 2 2 4 1



Ensembl Acc Id: ENSRNOT00000041434   ⟹   ENSRNOP00000051202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl160,906,144 - 60,910,686 (+)Ensembl
Rnor_6.0 Ensembl161,132,818 - 61,133,726 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099615   ⟹   ENSRNOP00000093353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl160,906,211 - 60,910,686 (+)Ensembl
RefSeq Acc Id: XM_063280554   ⟹   XP_063136624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,581,345 - 69,582,316 (+)NCBI
Protein RefSeqs XP_063136624 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99778 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000051202.4
  ENSRNOP00000093353.1
Ensembl Acc Id: ENSRNOP00000051202   ⟸   ENSRNOT00000041434
Ensembl Acc Id: ENSRNOP00000093353   ⟸   ENSRNOT00000099615
RefSeq Acc Id: XP_063136624   ⟸   XM_063280554
- UniProtKB: A6KB87 (UniProtKB/TrEMBL)
G-protein coupled receptors family 1 profile

Name Modeler Protein Id AA Range Protein Structure
AF-Q5J3G6-F1-model_v2 AlphaFold Q5J3G6 1-302 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 16 of 16 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-61187 BioCyc
Ensembl Genes ENSRNOG00000028807 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041434.4 UniProtKB/TrEMBL
  ENSRNOT00000099615.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
NCBI Gene 494225 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vom1r20 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028807 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6KB87 ENTREZGENE, UniProtKB/TrEMBL
  Q5J3G6_RAT UniProtKB/TrEMBL
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-06-08 Vom1r20  vomeronasal 1 receptor, 20  V1rf1  vomeronasal 1 receptor, F1  Symbol and Name updated 2325755 APPROVED
2008-07-23 V1rf1  vomeronasal 1 receptor, F1    vomeronasal V1r-type receptor V1rf1  Name updated 1299863 APPROVED
2005-07-29 V1rf1  vomeronasal V1r-type receptor V1rf1      Symbol and Name status set to provisional 70820 PROVISIONAL