VN1R4 (vomeronasal 1 receptor 4) - Rat Genome Database

Name: VN1R4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: VN1R4 (vomeronasal 1 receptor 4) Homo sapiens

Analyze

Symbol:

VN1R4

Name:

vomeronasal 1 receptor 4

RGD ID:

1347041

HGNC Page

HGNC:19871

Description:

Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CTD-2245F17.9; G-protein coupled receptor GPCR27; hGPCR27; pheromone receptor; V1R-like 4; V1r-like receptor 4; V1RL4; vomeronasal type-1 receptor 4

RGD Orthologs

Alliance Genes

More Info

more info ...

Related Pseudogenes:

VN1R101P VN1R103P VN1R108P VN1R11P VN1R15P VN1R18P VN1R20P VN1R21P VN1R22P VN1R25P VN1R28P VN1R30P VN1R33P VN1R34P VN1R35P VN1R37P VN1R38P VN1R40P VN1R46P VN1R57P VN1R59P VN1R64P VN1R65P VN1R67P VN1R68P VN1R69P VN1R6P VN1R70P VN1R76P VN1R77P VN1R79P VN1R7P VN1R80P VN1R81P VN1R84P VN1R92P VN1R97P VN1R9P

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	53,266,676 - 53,267,723 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	53,266,676 - 53,267,723 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	53,769,929 - 53,770,976 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	58,461,825 - 58,462,730 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	58,461,824 - 58,462,730	NCBI
Celera	19	50,811,899 - 50,812,804 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	50,090,647 - 50,091,552 (-)	NCBI		HuRef
CHM1_1	19	53,771,924 - 53,772,829 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	56,346,170 - 56,347,217 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-Hydroxypyrene (EXP)

aflatoxin B1 (EXP)

arsenite(3-) (EXP)

benzo[a]pyrene (EXP)

bisphenol A (ISO)

CGP 52608 (EXP)

chlorpyrifos (ISO)

copper atom (ISO)

copper(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G protein-coupled receptor signaling pathway (IEA)

response to pheromone (IEA)

sensory perception of chemical stimulus (IEA)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

pheromone receptor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12044878	PMID:12123587	PMID:12477932	PMID:12826614	PMID:15489334	PMID:18029348	PMID:19952141	PMID:21873635

Genomics

Comparative Map Data

VN1R4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	53,266,676 - 53,267,723 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	53,266,676 - 53,267,723 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	53,769,929 - 53,770,976 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	58,461,825 - 58,462,730 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	58,461,824 - 58,462,730	NCBI
Celera	19	50,811,899 - 50,812,804 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	50,090,647 - 50,091,552 (-)	NCBI		HuRef
CHM1_1	19	53,771,924 - 53,772,829 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	56,346,170 - 56,347,217 (-)	NCBI		T2T-CHM13v2.0

Vmn1r237
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	21,534,279 - 21,535,148 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	21,532,127 - 21,535,174 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	21,314,017 - 21,314,886 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	21,311,865 - 21,314,912 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	21,450,981 - 21,451,850 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	21,018,714 - 21,019,583 (+)	NCBI		MGSCv36	mm8
MGSCv36	17	20,370,997 - 20,371,866 (+)	NCBI		MGSCv36	mm8
Celera	7	145,993,369 - 145,994,238 (+)	NCBI		Celera
Cytogenetic Map	17	A3.2	NCBI
cM Map	17	11.4	NCBI

Vom1r21
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	69,636,830 - 69,637,753 (+)	NCBI		GRCr8
mRatBN7.2	1	60,963,939 - 60,964,862 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	60,961,052 - 60,970,529 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	19	28,377,249 - 28,378,118 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	28,377,249 - 28,378,118 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	39,317,209 - 39,318,078 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	58,877,734 - 58,878,603 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	58,880,678 - 58,881,548 (+)	NCBI
Celera	1	57,082,890 - 57,083,759 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

LOC100971599
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	59,294,074 - 59,294,981 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	61,212,480 - 61,213,387 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	50,185,819 - 50,186,726 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	59,066,520 - 59,067,427 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

VN1R4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	103,754,428 - 103,755,378 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	103,619,140 - 103,620,090 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	104,210,210 - 104,211,160 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	103,841,645 - 103,842,595 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	103,603,998 - 103,604,948 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	104,323,517 - 104,324,467 (+)	NCBI		UU_Cfam_GSD_1.0

LOC110261298
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	57,751,417 - 57,752,358 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Variants

Variants in VN1R4
14 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 19q13.33-13.43(chr19:50191219-58535818)x3	copy number gain	See cases [RCV000050883]	Chr19:50191219..58535818 [GRCh38] Chr19:50694476..59047185 [GRCh37] Chr19:55386288..63738997 [NCBI36] Chr19:19q13.33-13.43	pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:49907832-58557889)x3	copy number gain	See cases [RCV000052925]	Chr19:49907832..58557889 [GRCh38] Chr19:50411089..59069256 [GRCh37] Chr19:55102901..63761068 [NCBI36] Chr19:19q13.33-13.43	pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:51141518-58539965)x3	copy number gain	See cases [RCV000052926]	Chr19:51141518..58539965 [GRCh38] Chr19:51644775..59051332 [GRCh37] Chr19:56336587..63743144 [NCBI36] Chr19:19q13.41-13.43	pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47908540-58539965)x3	copy number gain	See cases [RCV000052914]	Chr19:47908540..58539965 [GRCh38] Chr19:48411797..59051332 [GRCh37] Chr19:53103609..63743144 [NCBI36] Chr19:19q13.33-13.43	pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47929575-58572206)x3	copy number gain	See cases [RCV000052915]	Chr19:47929575..58572206 [GRCh38] Chr19:48432832..59083573 [GRCh37] Chr19:53124644..63775385 [NCBI36] Chr19:19q13.33-13.43	pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52612432-58581203)x3	copy number gain	See cases [RCV000134174]	Chr19:52612432..58581203 [GRCh38] Chr19:53115685..59092570 [GRCh37] Chr19:57807497..63784382 [NCBI36] Chr19:19q13.41-13.43	pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52955056-58581203)x3	copy number gain	See cases [RCV000134139]	Chr19:52955056..58581203 [GRCh38] Chr19:53458309..59092570 [GRCh37] Chr19:58150121..63784382 [NCBI36] Chr19:19q13.41-13.43	pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:50152520-58581203)x3	copy number gain	See cases [RCV000135843]	Chr19:50152520..58581203 [GRCh38] Chr19:50655777..59092570 [GRCh37] Chr19:55347589..63784382 [NCBI36] Chr19:19q13.33-13.43	pathogenic
GRCh38/hg38 19q13.42(chr19:53159246-53289022)x3	copy number gain	See cases [RCV000140192]	Chr19:53159246..53289022 [GRCh38] Chr19:53662499..53792275 [GRCh37] Chr19:58354311..58484087 [NCBI36] Chr19:19q13.42	likely benign
GRCh38/hg38 19q13.41-13.43(chr19:52143873-58445521)x3	copy number gain	See cases [RCV000142008]	Chr19:52143873..58445521 [GRCh38] Chr19:52647126..58956888 [GRCh37] Chr19:57338938..63648700 [NCBI36] Chr19:19q13.41-13.43	pathogenic
GRCh37/hg19 19q13.33-13.43(chr19:50489390-59095359)x3	copy number gain	See cases [RCV000445925]	Chr19:50489390..59095359 [GRCh37] Chr19:19q13.33-13.43	pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3	copy number gain	See cases [RCV000511289]	Chr19:260912..58956888 [GRCh37] Chr19:19p13.3-q13.43	pathogenic\|uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)	copy number gain	See cases [RCV000512296]	Chr19:260912..58956888 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3	copy number gain	not provided [RCV000752444]	Chr19:260912..59097160 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3	copy number gain	not provided [RCV000752439]	Chr19:68029..59110290 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19q13.41-13.42(chr19:53184204-54346718)x3	copy number gain	not provided [RCV000740221]	Chr19:53184204..54346718 [GRCh37] Chr19:19q13.41-13.42	uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:50740074-59097160)x3	copy number gain	not provided [RCV000740208]	Chr19:50740074..59097160 [GRCh37] Chr19:19q13.33-13.43	pathogenic
NM_173857.3(VN1R4):c.658A>G (p.Asn220Asp)	single nucleotide variant	not provided [RCV000948489]	Chr19:53267008 [GRCh38] Chr19:53770261 [GRCh37] Chr19:19q13.42	benign
GRCh37/hg19 19q13.42(chr19:53762536-53953261)x1	copy number loss	not provided [RCV001007056]	Chr19:53762536..53953261 [GRCh37] Chr19:19q13.42	uncertain significance
GRCh37/hg19 19q13.32-13.42(chr19:47939842-54626871)	copy number gain	not provided [RCV001249294]	Chr19:47939842..54626871 [GRCh37] Chr19:19q13.32-13.42	not provided
NM_173857.3(VN1R4):c.766A>G (p.Met256Val)	single nucleotide variant	Inborn genetic diseases [RCV003289690]	Chr19:53266900 [GRCh38] Chr19:53770153 [GRCh37] Chr19:19q13.42	uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:48463931-57095254)x3	copy number gain	not provided [RCV001259944]	Chr19:48463931..57095254 [GRCh37] Chr19:19q13.33-13.43	pathogenic
NM_173857.3(VN1R4):c.416T>C (p.Met139Thr)	single nucleotide variant	Inborn genetic diseases [RCV003277016]	Chr19:53267250 [GRCh38] Chr19:53770503 [GRCh37] Chr19:19q13.42	uncertain significance
GRCh37/hg19 19q13.42(chr19:53723679-53787396)x1	copy number loss	not provided [RCV002473759]	Chr19:53723679..53787396 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.856A>C (p.Met286Leu)	single nucleotide variant	Inborn genetic diseases [RCV002777085]	Chr19:53266810 [GRCh38] Chr19:53770063 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.833C>T (p.Pro278Leu)	single nucleotide variant	Inborn genetic diseases [RCV002739676]	Chr19:53266833 [GRCh38] Chr19:53770086 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.605T>C (p.Met202Thr)	single nucleotide variant	Inborn genetic diseases [RCV002997896]	Chr19:53267061 [GRCh38] Chr19:53770314 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.254A>G (p.Tyr85Cys)	single nucleotide variant	Inborn genetic diseases [RCV002950522]	Chr19:53267412 [GRCh38] Chr19:53770665 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.604A>G (p.Met202Val)	single nucleotide variant	Inborn genetic diseases [RCV002701910]	Chr19:53267062 [GRCh38] Chr19:53770315 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.377A>G (p.His126Arg)	single nucleotide variant	Inborn genetic diseases [RCV003003782]	Chr19:53267289 [GRCh38] Chr19:53770542 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.46G>A (p.Val16Met)	single nucleotide variant	Inborn genetic diseases [RCV002765187]	Chr19:53267620 [GRCh38] Chr19:53770873 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.202G>A (p.Ala68Thr)	single nucleotide variant	Inborn genetic diseases [RCV002964618]	Chr19:53267464 [GRCh38] Chr19:53770717 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.425A>G (p.Asn142Ser)	single nucleotide variant	Inborn genetic diseases [RCV002965568]	Chr19:53267241 [GRCh38] Chr19:53770494 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.191A>T (p.Gln64Leu)	single nucleotide variant	Inborn genetic diseases [RCV002964081]	Chr19:53267475 [GRCh38] Chr19:53770728 [GRCh37] Chr19:19q13.42	uncertain significance
NM_173857.3(VN1R4):c.11G>A (p.Arg4Gln)	single nucleotide variant	Inborn genetic diseases [RCV003344576]	Chr19:53267655 [GRCh38] Chr19:53770908 [GRCh37] Chr19:19q13.42	uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:49625130-57647352)x3	copy number gain	not provided [RCV003485200]	Chr19:49625130..57647352 [GRCh37] Chr19:19q13.33-13.43	likely pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	84
Interacting mature miRNAs:	85
Transcripts:	ENST00000311170
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

D19S921

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	53,817,876 - 53,818,069	UniSTS	GRCh37
GRCh37	19	53,771,240 - 53,771,473	UniSTS	GRCh37
Build 36	19	58,463,052 - 58,463,285	RGD	NCBI36
Celera	19	50,813,126 - 50,813,355	RGD
Celera	19	50,859,560 - 50,859,753	UniSTS
Cytogenetic Map	19	q13.42	UniSTS
HuRef	19	50,091,874 - 50,092,111	UniSTS
Marshfield Genetic Map	19	87.66	UniSTS
Marshfield Genetic Map	19	87.66	RGD
Genethon Genetic Map	19	91.7	UniSTS
TNG Radiation Hybrid Map	19	21223.0	UniSTS
deCODE Assembly Map	19	94.56	UniSTS
Whitehead-YAC Contig Map	19		UniSTS

UniSTS:485589

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	53,769,929 - 53,770,976	UniSTS	GRCh37
Celera	19	50,811,815 - 50,812,862	UniSTS
HuRef	19	50,090,563 - 50,091,610	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

High

Medium

Low

224

Below cutoff

128

203

122

268

116

200

206

103

182

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_173857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB083609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC092070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY114733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY312485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY312486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY312487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY312488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CS248620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000311170 ⟹ ENSP00000310856

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	53,266,676 - 53,267,723 (-)	Ensembl

RefSeq Acc Id:

NM_173857 ⟹ NP_776256

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	53,266,676 - 53,267,723 (-)	NCBI
GRCh37	19	53,770,013 - 53,770,918 (-)	RGD
Build 36	19	58,461,825 - 58,462,730 (-)	NCBI Archive
Celera	19	50,811,899 - 50,812,804 (-)	RGD
HuRef	19	50,090,647 - 50,091,552 (-)	ENTREZGENE
CHM1_1	19	53,771,924 - 53,772,829 (-)	NCBI
T2T-CHM13v2.0	19	56,346,170 - 56,347,217 (-)	NCBI

Sequence:

show sequence

ATGGCCTCCCGGTATGTGGCAGTGGGAATGATCTTATCACAGACCGTGGTGGGAGTCCTGGGGA
GCTTCTCTGTTCTTCTCCATTATCTCTCCTTTTACTGCACTGGGTGCAGGTTAAGGTCCACAGA
TTTGATTGTTAAGCACCTGATTGTAGCCAACTTCTTAGCTCTCCGCTGTAAAGGAGTCCCCCAG
ACAATGGCAGCTTTTGGGGTTAGATATTTTCTCAATGCTCTTGGGTGCAAACTTGTTTTCTATC
TCCATAGAGTGGGCAGGGGAGTGTCCATTGGCACCACCTGCCTCTTGAGTGTCTTCCAGGTGAT
CACGGTCAGCTCCAGGAAATCCAGGTGGGCAAAACTTAAAGAGAAAGCCCCCAAGCATGTTGGC
TTTTCTGTTCTCCTGTGCTGGATCGTGTGCATGTTGGTAAACATCATCTTTCCCATGTATGTGA
CTGGCAAATGGAACTACACAAACATCACAGTGAACGAGGATTTGGGATACTGTTCTGGGGGAGG
CAACAACAAAATCGCACAGACACTGCGTGCAATGTTGTTATCATTCCCTGATGTGTTGTGTCTG
GGGCTCATGCTCTGGGTCAGCAGCTCCATGGTTTGCATACTGCACAGGCACAAGCAGCGGGTCC
AGCACATTGATAGGAGCAATCTCTCCCCCAGAGCCTCCCCAGAGAACAGAGCTACGCAGAGCAT
CCTCATCCTGGTGAGCACCTTTGTGTCTTCTTACACTCTCTCCTGCCTTTTCCAAGTTTGTATG
GCTCTTTTGGATAATCCCAATAGTTTACTGGTGAACACTTCAGCCTTAATGAGTGTATGTTTCC
CAACTCTCAGCCCCTTTGTTCTCATGAGCTGTGACCCCAGTGTATACAGGTTTTGTTTTGCCTG
GAAAAGATGA

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Protein Sequences


Protein RefSeqs	NP_776256	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI04936	(Get FASTA)	NCBI Sequence Viewer
	AAI04940	(Get FASTA)	NCBI Sequence Viewer
	AAM66754	(Get FASTA)	NCBI Sequence Viewer
	AAP85618	(Get FASTA)	NCBI Sequence Viewer
	AAP85619	(Get FASTA)	NCBI Sequence Viewer
	AAP85620	(Get FASTA)	NCBI Sequence Viewer
	AAP85621	(Get FASTA)	NCBI Sequence Viewer
	BAB89322	(Get FASTA)	NCBI Sequence Viewer
	CAJ56825	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000310856
	ENSP00000310856.4
GenBank Protein	Q7Z5H5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_776256 ⟸ NM_173857

- UniProtKB:

Q8TDU2 (UniProtKB/Swiss-Prot), Q7Z5H7 (UniProtKB/Swiss-Prot), Q7Z5H6 (UniProtKB/Swiss-Prot), Q2M3E2 (UniProtKB/Swiss-Prot), Q7Z5H5 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MASRYVAVGMILSQTVVGVLGSFSVLLHYLSFYCTGCRLRSTDLIVKHLIVANFLALRCKGVPQ
TMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSVFQVITVSSRKSRWAKLKEKAPKHVG
FSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNEDLGYCSGGGNNKIAQTLRAMLLSFPDVLCL
GLMLWVSSSMVCILHRHKQRVQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCM
ALLDNPNSLLVNTSALMSVCFPTLSPFVLMSCDPSVYRFCFAWKR

hide sequence

RefSeq Acc Id:

ENSP00000310856 ⟸ ENST00000311170

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7Z5H5-F1-model_v2	AlphaFold	Q7Z5H5	1-301	view protein structure

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:19871	AgrOrtholog
COSMIC	VN1R4	COSMIC
Ensembl Genes	ENSG00000228567	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000311170	ENTREZGENE
	ENST00000311170.5	UniProtKB/Swiss-Prot
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot
GTEx	ENSG00000228567	GTEx
HGNC ID	HGNC:19871	ENTREZGENE
Human Proteome Map	VN1R4	Human Proteome Map
InterPro	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot
	Vmron_rcpt_1	UniProtKB/Swiss-Prot
KEGG Report	hsa:317703	UniProtKB/Swiss-Prot
NCBI Gene	317703	ENTREZGENE
PANTHER	PTHR24062	UniProtKB/Swiss-Prot
	VOMERONASAL TYPE-1 RECEPTOR 4	UniProtKB/Swiss-Prot
Pfam	V1R	UniProtKB/Swiss-Prot
PharmGKB	PA134985458	PharmGKB
PRINTS	VOMERONASL1R	UniProtKB/Swiss-Prot
PROSITE	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot
UniProt	Q2M3E2	ENTREZGENE
	Q7Z5H5	ENTREZGENE
	Q7Z5H6	ENTREZGENE
	Q7Z5H7	ENTREZGENE
	Q8TDU2	ENTREZGENE
	VN1R4_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	Q2M3E2	UniProtKB/Swiss-Prot
	Q7Z5H6	UniProtKB/Swiss-Prot
	Q7Z5H7	UniProtKB/Swiss-Prot
	Q8TDU2	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar