Hsd17b13 (hydroxysteroid (17-beta) dehydrogenase 13) - Rat Genome Database

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Gene: Hsd17b13 (hydroxysteroid (17-beta) dehydrogenase 13) Rattus norvegicus
Analyze
Symbol: Hsd17b13
Name: hydroxysteroid (17-beta) dehydrogenase 13
RGD ID: 1359553
Description: Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor and steroid dehydrogenase activity. Predicted to be involved in lipid metabolic process. Predicted to act upstream of or within positive regulation of lipid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in lipid droplet. Orthologous to human HSD17B13 (hydroxysteroid 17-beta dehydrogenase 13); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 17-beta hydroxysteroid dehydrogenase 13; 17-beta-HSD 13; 17-beta-hydroxysteroid dehydrogenase 13; hepatic retinol/retinal dehydrogenase; MGC108860; short-chain dehydrogenase/reductase 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8146,056,708 - 6,071,463 (+)NCBIGRCr8
mRatBN7.2145,751,697 - 5,766,809 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl145,752,132 - 5,768,166 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx145,720,997 - 5,735,669 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0147,021,227 - 7,035,909 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0145,719,659 - 5,734,100 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,113,544 - 7,128,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,113,544 - 7,128,218 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0147,103,692 - 7,118,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4146,901,197 - 6,915,871 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1146,901,196 - 6,915,871 (+)NCBI
Celera145,892,024 - 5,906,128 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hsd17b13Ratautosomal dominant polycystic kidney disease  ISOHSD17B13 (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal dominant polycystic kidney diseaseClinVarPMID:25741868
Hsd17b13Ratsteatotic liver disease  ISOHSD17B13 (Homo sapiens)8554872ClinVar Annotator: match by term: HSD17B13 POLYMORPHISMClinVarPMID:29562163 and PMID:34930143

1 to 20 of 70 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hsd17b13Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of HSD17B13 mRNA]CTDPMID:31150632
Hsd17b13Rat(1->4)-beta-D-glucan multiple interactionsISOHsd17b13 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of HSD17B13 mRNACTDPMID:36331819
Hsd17b13Rat1,2-dimethylhydrazine decreases expressionISOHsd17b13 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of HSD17B13 mRNACTDPMID:22206623
Hsd17b13Rat17beta-estradiol affects expressionISOHsd17b13 (Mus musculus)6480464Estradiol affects the expression of HSD17B13 mRNACTDPMID:39298647
Hsd17b13Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOHSD17B13 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of HSD17B13 mRNACTDPMID:22298810
Hsd17b13Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of HSD17B13 mRNACTDPMID:22298810
Hsd17b13Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOHsd17b13 (Mus musculus)64804642 more ...CTDPMID:38648751
Hsd17b13Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of HSD17B13 mRNACTDPMID:21346803
Hsd17b13Rat4,4'-sulfonyldiphenol affects expressionISOHsd17b13 (Mus musculus)6480464bisphenol S affects the expression of HSD17B13 mRNACTDPMID:39298647
Hsd17b13Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of HSD17B13 mRNACTDPMID:25825206
Hsd17b13Rataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of HSD17B13 mRNACTDPMID:33354967
Hsd17b13Ratatrazine decreases expressionISOHsd17b13 (Mus musculus)6480464Atrazine results in decreased expression of HSD17B13 mRNACTDPMID:23376530
Hsd17b13Ratatrazine affects methylationEXP 6480464Atrazine affects the methylation of HSD17B13 geneCTDPMID:35440735
Hsd17b13Ratbenzo[a]pyrene decreases methylationISOHSD17B13 (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of HSD17B13 promoterCTDPMID:27901495
Hsd17b13Ratbenzo[a]pyrene affects methylationISOHSD17B13 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of HSD17B13 intronCTDPMID:30157460
Hsd17b13Ratbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of HSD17B13 mRNACTDPMID:25181051
Hsd17b13Ratbisphenol A decreases expressionISOHsd17b13 (Mus musculus)6480464bisphenol A results in decreased expression of HSD17B13 mRNACTDPMID:33221593
Hsd17b13Ratbisphenol A increases expressionISOHsd17b13 (Mus musculus)6480464bisphenol A results in increased expression of HSD17B13 mRNACTDPMID:30245210
Hsd17b13Ratbisphenol A increases methylationISOHsd17b13 (Mus musculus)6480464bisphenol A results in increased methylation of HSD17B13 promoterCTDPMID:27312807
Hsd17b13Ratbisphenol F increases expressionISOHsd17b13 (Mus musculus)6480464bisphenol F results in increased expression of HSD17B13 mRNACTDPMID:38685157

1 to 20 of 70 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hsd17b13Ratlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
Hsd17b13Ratpositive regulation of lipid biosynthetic process acts_upstream_of_or_withinISOHSD17B13 (Homo sapiens)1624291 PMID:25028495RGDPMID:25028495
Hsd17b13Ratpositive regulation of lipid biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:Q7Z5P4 and ensembl:ENSP000003333001600115GO_REF:0000107EnsemblGO_REF:0000107

Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hsd17b13Ratendoplasmic reticulum located_inIEAUniProtKB-SubCell:SL-00951600115GO_REF:0000044UniProtGO_REF:0000044
Hsd17b13Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Hsd17b13Ratlipid droplet located_inISOHSD17B13 (Homo sapiens)1624291 PMID:25028495RGDPMID:25028495
Hsd17b13Ratlipid droplet located_inIEAUniProtKB:Q8VCR2 and ensembl:ENSMUSP000001084221600115GO_REF:0000107EnsemblGO_REF:0000107
Hsd17b13Ratlipid droplet is_active_inIBAFB:FBgn0029994 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Hsd17b13Ratlipid droplet located_inIEAUniProtKB-SubCell:SL-01541600115GO_REF:0000044UniProtGO_REF:0000044
Hsd17b13Ratlipid droplet located_inIEAUniProtKB-KW:KW-05511600115GO_REF:0000043UniProtGO_REF:0000043
Hsd17b13Ratlipid droplet located_inIEAUniProtKB:Q7Z5P4 and ensembl:ENSP000003333001600115GO_REF:0000107EnsemblGO_REF:0000107
Hsd17b13Ratlipid droplet located_inISSUniProtKB:Q8VCR21600115GO_REF:0000024UniProtGO_REF:0000024
Hsd17b13Ratlipid droplet located_inISOHsd17b13 (Mus musculus)1624291 PMID:18359291RGDPMID:18359291
1 to 10 of 10 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hsd17b13Ratall-trans-retinol dehydrogenase (NAD+) activity enablesIEARHEA:212841600115GO_REF:0000116RHEAGO_REF:0000116
Hsd17b13Ratestradiol 17-beta-dehydrogenase [NAD(P)+] activity enablesIEARHEA:246121600115GO_REF:0000116RHEAGO_REF:0000116
Hsd17b13Ratoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
Hsd17b13Ratoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor enablesIBAMGI:1315215 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Hsd17b13Ratprotein binding enablesISOHSD17B13 (Homo sapiens)1624291UniProtKB:A0A0C4DFN3 more ...RGDPMID:28514442 more ...
Hsd17b13Ratsteroid dehydrogenase activity enablesIBAPANTHER:PTN001963276 and UniProtKB:Q8NBQ51600115GO_REF:0000033GO_CentralGO_REF:0000033


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. null JRS Domain-based curation
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:15489334   PMID:18359291   PMID:25028495  



Hsd17b13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8146,056,708 - 6,071,463 (+)NCBIGRCr8
mRatBN7.2145,751,697 - 5,766,809 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl145,752,132 - 5,768,166 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx145,720,997 - 5,735,669 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0147,021,227 - 7,035,909 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0145,719,659 - 5,734,100 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,113,544 - 7,128,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,113,544 - 7,128,218 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0147,103,692 - 7,118,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4146,901,197 - 6,915,871 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1146,901,196 - 6,915,871 (+)NCBI
Celera145,892,024 - 5,906,128 (+)NCBICelera
Cytogenetic Map14p22NCBI
HSD17B13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38487,303,794 - 87,322,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl487,303,789 - 87,322,886 (-)EnsemblGRCh38hg38GRCh38
GRCh37488,224,946 - 88,244,034 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36488,443,965 - 88,463,062 (-)NCBINCBI36Build 36hg18NCBI36
Build 34488,582,119 - 88,601,217NCBI
Celera485,513,757 - 85,532,909 (-)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef483,970,650 - 83,989,809 (-)NCBIHuRef
CHM1_1488,202,022 - 88,221,156 (-)NCBICHM1_1
T2T-CHM13v2.0490,632,830 - 90,651,922 (-)NCBIT2T-CHM13v2.0
Hsd17b13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395104,103,308 - 104,125,254 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5104,103,306 - 104,125,276 (-)EnsemblGRCm39 Ensembl
GRCm385103,955,442 - 103,977,388 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5103,955,440 - 103,977,410 (-)EnsemblGRCm38mm10GRCm38
MGSCv375104,384,461 - 104,406,407 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365104,195,744 - 104,217,666 (-)NCBIMGSCv36mm8
Celera5101,262,064 - 101,284,149 (-)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.46NCBI
Hsd17b13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554742,532,213 - 2,555,260 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554742,532,213 - 2,554,324 (+)NCBIChiLan1.0ChiLan1.0
HSD17B13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2385,320,330 - 85,340,053 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1485,582,387 - 85,602,146 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0479,606,163 - 79,625,401 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1490,333,816 - 90,351,346 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl490,333,816 - 90,351,346 (-)Ensemblpanpan1.1panPan2
HSD17B13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13210,793,211 - 10,813,785 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3210,794,617 - 10,854,193 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3231,140,526 - 31,160,493 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03210,845,726 - 10,865,737 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3210,845,726 - 10,906,673 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13210,926,962 - 10,946,969 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,754,978 - 10,774,991 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03229,180,080 - 29,200,062 (+)NCBIUU_Cfam_GSD_1.0
Hsd17b13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052852,277,466 - 2,329,764 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936896698,254 - 709,550 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936896657,443 - 709,735 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSD17B13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1735,683,556 - 35,702,439 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl735,682,130 - 35,702,216 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603714,381,279 - 14,399,658 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hsd17b13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248723,844,220 - 3,865,342 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248723,844,903 - 3,865,337 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Hsd17b13
182 total Variants

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:38
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000038188
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat

1 to 10 of 11 rows
RH139738  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2145,766,474 - 5,766,693 (+)MAPPERmRatBN7.2
Rnor_6.0147,127,887 - 7,128,105NCBIRnor6.0
Rnor_5.0147,118,035 - 7,118,253UniSTSRnor5.0
RGSC_v3.4146,915,540 - 6,915,758UniSTSRGSC3.4
Celera145,905,797 - 5,906,015UniSTS
RH 3.4 Map14114.1UniSTS
Cytogenetic Map14p22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000038188   ⟹   ENSRNOP00000029333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl145,752,132 - 5,766,806 (+)Ensembl
Rnor_6.0 Ensembl147,113,544 - 7,128,218 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103301   ⟹   ENSRNOP00000097499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl145,752,132 - 5,768,166 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112563   ⟹   ENSRNOP00000081986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl145,752,202 - 5,766,806 (+)Ensembl
RefSeq Acc Id: NM_001009684   ⟹   NP_001009684
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8146,056,789 - 6,071,463 (+)NCBI
mRatBN7.2145,752,132 - 5,766,806 (+)NCBI
Rnor_6.0147,113,544 - 7,128,218 (+)NCBI
Rnor_5.0147,103,692 - 7,118,366 (+)NCBI
RGSC_v3.4146,901,197 - 6,915,871 (+)RGD
Celera145,892,024 - 5,906,128 (+)RGD
Sequence:
RefSeq Acc Id: XR_005492928
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8146,056,708 - 6,071,080 (+)NCBI
mRatBN7.2145,751,697 - 5,766,809 (+)NCBI
Protein RefSeqs NP_001009684 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88191 (Get FASTA)   NCBI Sequence Viewer  
  EDL99511 (Get FASTA)   NCBI Sequence Viewer  
  EDL99512 (Get FASTA)   NCBI Sequence Viewer  
  EDL99513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000029333
  ENSRNOP00000029333.2
GenBank Protein Q5M875 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001009684   ⟸   NM_001009684
- Peptide Label: precursor
- UniProtKB: Q5M875 (UniProtKB/Swiss-Prot),   A0A8I5ZU34 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000029333   ⟸   ENSRNOT00000038188
Ensembl Acc Id: ENSRNOP00000097499   ⟸   ENSRNOT00000103301
Ensembl Acc Id: ENSRNOP00000081986   ⟸   ENSRNOT00000112563

Name Modeler Protein Id AA Range Protein Structure
AF-Q5M875-F1-model_v2 AlphaFold Q5M875 1-300 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699179
Promoter ID:EPDNEW_R9703
Type:multiple initiation site
Name:Hsd17b13_1
Description:hydroxysteroid (17-beta) dehydrogenase 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0147,113,529 - 7,113,589EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-16495 BioCyc
Ensembl Genes ENSRNOG00000002212 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000038188 ENTREZGENE
  ENSRNOT00000038188.3 UniProtKB/Swiss-Prot
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7372031 IMAGE-MGC_LOAD
InterPro NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
  SDR_fam UniProtKB/Swiss-Prot
KEGG Report rno:305150 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108860 IMAGE-MGC_LOAD
NCBI Gene 305150 ENTREZGENE
PANTHER 17-BETA-HYDROXYSTEROID DEHYDROGENASE 13 UniProtKB/Swiss-Prot
  PKSB UniProtKB/Swiss-Prot
Pfam adh_short UniProtKB/Swiss-Prot
PhenoGen Hsd17b13 PhenoGen
PRINTS GDHRDH UniProtKB/Swiss-Prot
  SDRFAMILY UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002212 RatGTEx
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot
UniProt A0A8I5ZU34 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARG4_RAT UniProtKB/TrEMBL
  A6K5U1_RAT UniProtKB/TrEMBL
  A6K5U2_RAT UniProtKB/TrEMBL
  A6K5U3_RAT UniProtKB/TrEMBL
  DHB13_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Hsd17b13  hydroxysteroid (17-beta) dehydrogenase 13  MGC108860  short-chain dehydrogenase/reductase 9  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC108860  short-chain dehydrogenase/reductase 9      Symbol and Name status set to provisional 70820 PROVISIONAL